mRNA_P-wetherbeei_contig54980.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54980.1.1
Unique NamemRNA_P-wetherbeei_contig54980.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A7W0A3I1_9CHLR (LLM class flavin-dependent oxidoreductase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A3I1_9CHLR)

HSP 1 Score: 189 bits (480), Expect = 3.670e-57
Identity = 93/137 (67.88%), Postives = 112/137 (81.75%), Query Frame = 1
Query:   13 RAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            R M +GLMMPIGE S+FG TP F DIV +AE ARD G++ +WFADHF +G  + +D  RGVWEA  LMAGVAARVP+++IGALVA TGYRNPGVIAK  ETID+ISDGRFILGLGAG  +P+++QFG PFD+R +RF
Sbjct:   22 RPMGVGLMMPIGEGSAFGDTPHFNDIVEMAEVARDIGVDALWFADHFTMG--SPEDELRGVWEAFTLMAGVAARVPEVKIGALVACTGYRNPGVIAKMTETIDDISDGRFILGLGAGWHQPEYDQFGMPFDYRVTRF 156          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A7W0NAH8_9CHLR (LLM class flavin-dependent oxidoreductase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0NAH8_9CHLR)

HSP 1 Score: 181 bits (458), Expect = 1.130e-53
Identity = 89/137 (64.96%), Postives = 108/137 (78.83%), Query Frame = 1
Query:   13 RAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            RAM LGLM+PI E ++FGGTP FAD+V ++  AR+ G + VWFADHFA G    D+  RGVWE   +MAGVAAR  +IQIGALVA TG+RNPG+IAK AE+IDEIS GRFILGLGAG  +P+++ FGFPF+HR SRF
Sbjct:   34 RAMQLGLMVPISETAAFGGTPSFADMVEMSRVAREVGFDAVWFADHFAFGARDDDEGLRGVWECWTVMAGVAARTEEIQIGALVACTGFRNPGLIAKMAESIDEISGGRFILGLGAGWHQPEYDMFGFPFNHRVSRF 170          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A7V9B0Z8_9CHLR (LLM class flavin-dependent oxidoreductase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B0Z8_9CHLR)

HSP 1 Score: 171 bits (433), Expect = 4.950e-50
Identity = 85/141 (60.28%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    1 PSSPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            P+S R M LGLM+PI E ++FG TP F D+V +A  A D G + +WFADHF  G  + ++ YRGVW+   +MAGVAA    IQIG+LVA+TGYR PGVIAK +E ID+ISDGRFILGLGAG  +P++E FG PFDHR SRF
Sbjct:   21 PASERRMGLGLMVPISEGAAFGETPHFRDMVEMARVATDVGFDALWFADHFTFG--SVEEGYRGVWDCWTMMAGVAAATEKIQIGSLVASTGYRTPGVIAKMSEAIDDISDGRFILGLGAGWHEPEYEMFGLPFDHRVSRF 159          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A7V9VDC6_9CHLR (LLM class flavin-dependent oxidoreductase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VDC6_9CHLR)

HSP 1 Score: 166 bits (419), Expect = 8.230e-48
Identity = 85/141 (60.28%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    7 SPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPD--IQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            SPR MSLGLM+PI E S+FGGTP F D++ +   A  +G +IVWFADHF+     A +P RGVWE    MAG+AA   D  I++G LVA TG+RNPG +AK AET+DE+S GRFILGLGAG  KP+++ FG PFDHRASRF
Sbjct:   29 SPRRMSLGLMVPIFENSAFGGTPGFGDMLQIVRTAAASGFDIVWFADHFSAVT-PAGEPGRGVWECFTTMAGLAAATNDLDIELGTLVACTGFRNPGALAKTAETLDEVSGGRFILGLGAGWHKPEYDMFGMPFDHRASRF 168          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A6J4VLV9_9CHLR (Bac_luciferase domain-containing protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A6J4VLV9_9CHLR)

HSP 1 Score: 163 bits (413), Expect = 5.090e-47
Identity = 82/141 (58.16%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 PSSPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            P S R  SLGLM+P+ E+++FG TPRF DI+ + + A D G E+VWFADHF  G   A+  +RG W+A  LMA VAA VP++QIG +VA T YRNPGVI K  E IDEIS+GRFILGLGAG  KP+++ FG PF+ R +RF
Sbjct:   22 PPSDRRASLGLMVPVSEKAAFGDTPRFTDIIEMCKVAADVGFEMVWFADHFTFG--DAEKGFRGSWDAWTLMAAVAASVPNLQIGPMVACTAYRNPGVIVKMTEMIDEISEGRFILGLGAGWHKPEYDGFGIPFEPRVTRF 160          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A6J4UUS5_9CHLR (Bac_luciferase domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UUS5_9CHLR)

HSP 1 Score: 162 bits (410), Expect = 1.580e-46
Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 PSSPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            P+S R  SLGLM+P+ E+++FGGTP F+D+V + + A D G E +WFADHF  G    D  +RG W+A  +MAGVAA VP++QIG +VA T YRNPGVI K  E I++IS GRFILGLGAG  KP+++ FG PF+ R SRF
Sbjct:   26 PASTRTGSLGLMVPVSEKAAFGGTPHFSDVVEICKMAADVGFEALWFADHFLYG--DKDKGFRGSWDAWTMMAGVAAAVPNLQIGPMVACTAYRNPGVIVKMTEMIEDISGGRFILGLGAGWHKPEYDNFGIPFEPRVSRF 164          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A6J4VKA6_9CHLR (Bac_luciferase domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VKA6_9CHLR)

HSP 1 Score: 160 bits (406), Expect = 7.100e-46
Identity = 82/141 (58.16%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 PSSPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            P+  R M LGLM+PI E S+FGGTPRFAD++A+   A D G +  WFADH  +     +   RGVWE   +MAG+AA    I IGALVA TG+RNPGV+AK AE+IDEIS GRF+LGLGAG   P++E FG+PFDHR +RF
Sbjct:   30 PAGKRPMQLGLMVPISEGSAFGGTPRFADMLAMTRTAADVGFDCAWFADHLIMQL-PPESEARGVWECWTMMAGLAAATEGIGIGALVACTGFRNPGVVAKMAESIDEISGGRFVLGLGAGWHLPEYEMFGYPFDHRVTRF 169          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A6J4V070_9CHLR (POSSIBLE OXIDOREDUCTASE n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V070_9CHLR)

HSP 1 Score: 160 bits (406), Expect = 7.280e-46
Identity = 82/139 (58.99%), Postives = 102/139 (73.38%), Query Frame = 1
Query:   13 RAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIG--ALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            R M LGLM+PI E S+FGGTP F D++ +  AA + G + VWFADHF+     A +P RGVWE    MAG+AA   D++IG   LVA TG+RNPG++AK AET+DEIS GRFILGLGAG  +P+++ FG PFDHRASRF
Sbjct:   30 RQMGLGLMVPIFENSAFGGTPGFTDMLEIVRAADEVGFDTVWFADHFSAVT-PAGEPGRGVWECFTTMAGLAAATSDLEIGLGTLVACTGFRNPGLLAKTAETLDEISGGRFILGLGAGWHEPEYDMFGMPFDHRASRF 167          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A7V9VUN0_9CHLR (LLM class flavin-dependent oxidoreductase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VUN0_9CHLR)

HSP 1 Score: 159 bits (402), Expect = 2.050e-45
Identity = 79/141 (56.03%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 PSSPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            P + R+ SLG+M+P+ ++++F GTP FAD++ V+  A  AG E++WFADHF+    T DD  RG W+A  LMA +AA VPD+QIG +VA T YRNPGVIAK  E ID+IS GRFILGLGAG  KP+++QFG  F+ R S+F
Sbjct:   20 PETRRSTSLGMMVPVSQRATFPGTPHFADMLQVSRDAASAGFEMLWFADHFSF---TTDDDVRGAWDAWTLMAAIAATVPDVQIGPMVACTAYRNPGVIAKMTEMIDDISGGRFILGLGAGWHKPENDQFGIRFEPRVSQF 157          
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Match: A0A7W0SUA9_9CHLR (LLM class flavin-dependent oxidoreductase (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0SUA9_9CHLR)

HSP 1 Score: 150 bits (379), Expect = 1.310e-43
Identity = 77/141 (54.61%), Postives = 102/141 (72.34%), Query Frame = 1
Query:    1 PSSPRAMSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGGTADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETIDEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF 423
            P++ R  SLGLM+P+ ++++F  TP FADI+ ++  A   GIE +WFADHF+    T++   RG W+A  LMA +AA+VP++QIG LVA T YRNPGVIAK  E I +IS GRFILGLGAG  KP++EQFG  F+ R S+F
Sbjct:   13 PATRRGTSLGLMVPVSQRATFPDTPHFADILEISTMAESIGIEGLWFADHFSF---TSETDLRGSWDAWTLMAAIAAQVPNVQIGPLVACTAYRNPGVIAKMTEMIQDISGGRFILGLGAGWHKPEYEQFGIRFEPRVSQF 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54980.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0A3I1_9CHLR3.670e-5767.88LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A7W0NAH8_9CHLR1.130e-5364.96LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A7V9B0Z8_9CHLR4.950e-5060.28LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A7V9VDC6_9CHLR8.230e-4860.28LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A6J4VLV9_9CHLR5.090e-4758.16Bac_luciferase domain-containing protein n=2 Tax=C... [more]
A0A6J4UUS5_9CHLR1.580e-4656.74Bac_luciferase domain-containing protein n=1 Tax=u... [more]
A0A6J4VKA6_9CHLR7.100e-4658.16Bac_luciferase domain-containing protein n=1 Tax=u... [more]
A0A6J4V070_9CHLR7.280e-4658.99POSSIBLE OXIDOREDUCTASE n=1 Tax=uncultured Thermom... [more]
A0A7V9VUN0_9CHLR2.050e-4556.03LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A7W0SUA9_9CHLR1.310e-4354.61LLM class flavin-dependent oxidoreductase (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54980contigP-wetherbeei_contig54980:2..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1382356.JQMP01000003_gene1417
PFAMsBac_luciferase
Model size423
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.56e-29
EggNOG OGsCOG2141@1|root,COG2141@2|Bacteria,2G8CA@200795|Chloroflexi,27Y7R@189775|Thermomicrobia
DescriptionLuciferase-like monooxygenase
Cds size405
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.9073412-CDS-P-wetherbeei_contig54980:1..4061683186819.9073412-CDS-P-wetherbeei_contig54980:1..406Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54980 2..406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.9224021-UTR-P-wetherbeei_contig54980:406..4241683186819.9224021-UTR-P-wetherbeei_contig54980:406..424Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54980 407..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54980.1.1prot_P-wetherbeei_contig54980.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54980 2..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54980.1.1

>prot_P-wetherbeei_contig54980.1.1 ID=prot_P-wetherbeei_contig54980.1.1|Name=mRNA_P-wetherbeei_contig54980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MSLGLMMPIGEQSSFGGTPRFADIVAVAEAARDAGIEIVWFADHFAVGGG
TADDPYRGVWEAIALMAGVAARVPDIQIGALVANTGYRNPGVIAKAAETI
DEISDGRFILGLGAGGMKPDHEQFGFPFDHRASRF
back to top

mRNA from alignment at P-wetherbeei_contig54980:2..424-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54980.1.1 ID=mRNA_P-wetherbeei_contig54980.1.1|Name=mRNA_P-wetherbeei_contig54980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig54980:2..424- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCCAGCCCCCGCGCGATGAGCCTCGGCCTGATGATGCCGATTGGCGA GCAGAGCTCCTTCGGCGGCACGCCCCGGTTCGCGGATATCGTCGCCGTGG CCGAGGCCGCGCGCGATGCCGGGATCGAGATCGTCTGGTTCGCCGATCAC TTCGCGGTCGGCGGCGGGACGGCGGATGATCCGTATCGCGGGGTCTGGGA GGCCATCGCGTTGATGGCGGGCGTGGCGGCGCGGGTGCCGGATATCCAGA TCGGGGCGTTGGTCGCGAACACGGGTTATCGCAATCCGGGGGTGATCGCC AAGGCCGCCGAGACGATCGACGAGATCAGCGATGGCCGCTTCATCCTCGG CCTGGGCGCGGGCGGCATGAAGCCGGATCACGAGCAGTTCGGTTTCCCCT TCGACCATCGCGCCTCCCGCTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54980:2..424-

>mRNA_P-wetherbeei_contig54980.1.1 ID=mRNA_P-wetherbeei_contig54980.1.1|Name=mRNA_P-wetherbeei_contig54980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig54980:2..424- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCTCGGCCTGATGATGCCGATTGGCGAGCAGAGCTCCTTCGGCGG
CACGCCCCGGTTCGCGGATATCGTCGCCGTGGCCGAGGCCGCGCGCGATG
CCGGGATCGAGATCGTCTGGTTCGCCGATCACTTCGCGGTCGGCGGCGGG
ACGGCGGATGATCCGTATCGCGGGGTCTGGGAGGCCATCGCGTTGATGGC
GGGCGTGGCGGCGCGGGTGCCGGATATCCAGATCGGGGCGTTGGTCGCGA
ACACGGGTTATCGCAATCCGGGGGTGATCGCCAAGGCCGCCGAGACGATC
GACGAGATCAGCGATGGCCGCTTCATCCTCGGCCTGGGCGCGGGCGGCAT
GAAGCCGGATCACGAGCAGTTCGGTTTCCCCTTCGACCATCGCGCCTCCC
GCTTC
back to top