mRNA_P-wetherbeei_contig5498.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5498.3.1
Unique NamemRNA_P-wetherbeei_contig5498.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5498.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5498contigP-wetherbeei_contig5498:2209..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog132908.ENSPVAP00000007159
Preferred nameANKRD52
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5
Model size643
Max annot lvl33208|Metazoa
KEGG koko:K15502,ko:K15504
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-06
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,39YNX@33154|Opisthokonta,3B9NB@33208|Metazoa,3CRFJ@33213|Bilateria,47ZCI@7711|Chordata,48Y1R@7742|Vertebrata,3J4BP@40674|Mammalia,4KT11@9397|Chiroptera
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-24_000540.1
DescriptionSerine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C
Cds size345
COG categoryS
BRITEko00000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.8284676-UTR-P-wetherbeei_contig5498:2208..25061683186819.8284676-UTR-P-wetherbeei_contig5498:2208..2506Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5498 2209..2506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.8515759-CDS-P-wetherbeei_contig5498:2506..28511683186819.8515759-CDS-P-wetherbeei_contig5498:2506..2851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5498 2507..2851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5498.3.1prot_P-wetherbeei_contig5498.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5498 2507..2851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5498.3.1

>prot_P-wetherbeei_contig5498.3.1 ID=prot_P-wetherbeei_contig5498.3.1|Name=mRNA_P-wetherbeei_contig5498.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MASQAGAPDEKGRTLLHNAASAGNSSKVEELLQTADPAAQDAYGQTALIL
AAEHGDTTTVVLLTSCGGRSVTLADSFGRTPLHWCSRRSDTAAIEVLLDQ
KVRFGTFLVVFRRP*
back to top

mRNA from alignment at P-wetherbeei_contig5498:2209..2851-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5498.3.1 ID=mRNA_P-wetherbeei_contig5498.3.1|Name=mRNA_P-wetherbeei_contig5498.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=643bp|location=Sequence derived from alignment at P-wetherbeei_contig5498:2209..2851- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGCAAGCTGGCGCTCCTGACGAGAAAGGCAGGACGCTCTTGCA
CAATGCAGCGAGTGCTGGAAACTCTAGCAAGGTGGAAGAGTTGCTTCAAA
CCGCAGACCCTGCTGCACAGGATGCTTATGGGCAAACCGCCCTGATATTG
GCGGCAGAGCACGGAGACACAACCACGGTGGTTCTTCTGACTAGCTGTGG
AGGTCGCTCAGTGACACTAGCTGACAGCTTTGGCAGAACACCCCTTCATT
GGTGTTCGCGGCGCTCTGATACAGCGGCAATAGAGGTTCTCCTAGACCAG
AAGGTGCGTTTTGGGACTTTCCTGGTCGTTTTCCGAAGACCGTAACGATG
GCATGCATGTAAATTGTAGAAAGACATTGGTCATTTTGCATTGATCGACC
ACCTGCAAGATAGGTACTGACACTTTTCCGACAATGGTGACGTTCGTGCA
GGCCGTAATATAGCTTAAAAGTAATAAACAGTTTGGAAGCGAGTGCTGCA
GCAAATTATCTCTACTTCGAGAGGCCTGAAAGCCAAAGTGACAGCTCCAA
ATCCACACCGTTTGGTTGCATTTTTCCCCCCGCCATGCGCCGGCCACTGC
CAGGCCGACCCGAACGCCGTTACGACCAGCGGGGCGACACCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5498:2209..2851-

>mRNA_P-wetherbeei_contig5498.3.1 ID=mRNA_P-wetherbeei_contig5498.3.1|Name=mRNA_P-wetherbeei_contig5498.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig5498:2209..2851- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGCAAGCTGGCGCTCCTGACGAGAAAGGCAGGACGCTCTTGCA
CAATGCAGCGAGTGCTGGAAACTCTAGCAAGGTGGAAGAGTTGCTTCAAA
CCGCAGACCCTGCTGCACAGGATGCTTATGGGCAAACCGCCCTGATATTG
GCGGCAGAGCACGGAGACACAACCACGGTGGTTCTTCTGACTAGCTGTGG
AGGTCGCTCAGTGACACTAGCTGACAGCTTTGGCAGAACACCCCTTCATT
GGTGTTCGCGGCGCTCTGATACAGCGGCAATAGAGGTTCTCCTAGACCAG
AAGGTGCGTTTTGGGACTTTCCTGGTCGTTTTCCGAAGACCGTAA
back to top