mRNA_P-wetherbeei_contig5498.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5498.1.1
Unique NamemRNA_P-wetherbeei_contig5498.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5498.1.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.660e-24
Identity = 93/272 (34.19%), Postives = 121/272 (44.49%), Query Frame = 1 
Query:   58 LRHIASVPLLREVKHPAGTSFGSMGGPCATPRLHSGXXXXXXXXXXXXXXXARPLVPARSAEDLFRSLN-------TAGACQGXXXXXXXXXXXLMAATYPVRQSGKGPGGGRRGAVDQQLGGIDIHSAFYAAPAARFVTTYNERHAVPLTLGSSPGGGGSGGGPIKGPGTXXXXGIRASDAAMAAAGRNARIAAKAAKLREHTERVALSVAVDMAKQRLRGEQRVYGKQRTRLRYLAWVVNQDAWAANEVPQLKDFEKRQFPATRDRIWGG 852
            +RH+     +R  K  A TSFGS GGP A   L                     L    S  DLF SL        TAGA              L  A    +Q+    G G  G       G D  S+FYA P+ RF TT +ER+A  + +              KG  +      R  D+A  A+ R  +   ++ KL+EH ER++LSV  +    RL+ E+RV GK RTRLRY  WV + D W  +EVP+L D++KRQFP    RI GG
Sbjct:    1 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQE--------QGEGSLSPKTSLASLSSCHDLFSSLEEGRLQDATAGA--------------LARARKVAKQTWADIGHGGIG----NDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIE----------KGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQSSRIRGG 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5498.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI0_ECTSI1.660e-2434.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5498contigP-wetherbeei_contig5498:509..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size879
Hectar predicted targeting categoryother localisation
Exons2
Cds size879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.7823577-CDS-P-wetherbeei_contig5498:508..12181683186819.7823577-CDS-P-wetherbeei_contig5498:508..1218Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5498 509..1218 +
1683186819.7949955-CDS-P-wetherbeei_contig5498:1439..16081683186819.7949955-CDS-P-wetherbeei_contig5498:1439..1608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5498 1440..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5498.1.1prot_P-wetherbeei_contig5498.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5498 509..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5498.1.1

>prot_P-wetherbeei_contig5498.1.1 ID=prot_P-wetherbeei_contig5498.1.1|Name=mRNA_P-wetherbeei_contig5498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp
WDTPRPRLLTVRERSLADTLRHIASVPLLREVKHPAGTSFGSMGGPCATP
RLHSGGGGSSSGGGGGNGAAARPLVPARSAEDLFRSLNTAGACQGGGDGG
GGGGGGLMAATYPVRQSGKGPGGGRRGAVDQQLGGIDIHSAFYAAPAARF
VTTYNERHAVPLTLGSSPGGGGSGGGPIKGPGTGGGGGIRASDAAMAAAG
RNARIAAKAAKLREHTERVALSVAVDMAKQRLRGEQRVYGKQRTRLRYLA
WVVNQDAWAANEVPQLKDFEKRQFPATRDRIWGGGGAAAALAG
back to top

mRNA from alignment at P-wetherbeei_contig5498:509..1608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5498.1.1 ID=mRNA_P-wetherbeei_contig5498.1.1|Name=mRNA_P-wetherbeei_contig5498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1100bp|location=Sequence derived from alignment at P-wetherbeei_contig5498:509..1608+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGACACGCCGAGGCCGCGCCTGCTGACGGTGCGGGAGCGCTCGCTGGC
CGACACACTCCGGCACATCGCCAGTGTGCCGCTTCTGCGCGAGGTGAAGC
ACCCGGCGGGCACGTCTTTCGGGAGCATGGGCGGCCCGTGCGCTACTCCC
CGCCTCCACAGCGGTGGCGGCGGCAGCAGCAGCGGAGGAGGAGGGGGAAA
TGGTGCGGCGGCGCGGCCACTGGTGCCGGCTCGCAGCGCCGAGGACCTCT
TTCGGAGCCTAAACACGGCCGGCGCCTGCCAGGGTGGCGGCGACGGCGGC
GGCGGCGGTGGCGGCGGGTTGATGGCCGCAACGTACCCCGTACGGCAAAG
CGGCAAGGGGCCGGGCGGCGGAAGGAGAGGCGCCGTCGACCAGCAGCTTG
GAGGCATAGACATTCACTCCGCCTTTTACGCAGCGCCGGCCGCCCGATTC
GTCACGACATACAACGAACGCCACGCGGTGCCGCTGACGCTGGGCTCATC
TCCCGGTGGTGGCGGAAGCGGCGGTGGACCAATCAAAGGTCCCGGCACAG
GTGGTGGCGGCGGTATCCGGGCCAGCGATGCCGCTATGGCCGCCGCGGGA
CGCAACGCAAGGATAGCTGCCAAGGCGGCCAAACTCCGCGAACACACGGA
GCGCGTGGCGCTGAGCGTGGCGGTGGACATGGCGAAACAGCGGCTCCGGG
GCGAACAAAGGTGAGGAAACAGTACACCTGGGCCGTTCGAAGGATGGAAC
GGATTGCGGGTTGAGGTTCATTTGGAGACTATATGTGATCCTCTGGTCCG
GGGTTGTATCCTGGGCTGTAAACGCTGCAGCAAGCGTTGCTTGTGGGATG
GTGTCTACGTGCTTGCCTCCACTTTGATTGGCTAAAAGAATCTATTTGCT
TCCGCTTCCGCTAACCTCCTTCCTCCGGCAGGGTCTACGGCAAGCAGCGG
ACGCGGCTGCGCTACCTGGCGTGGGTGGTCAACCAGGACGCGTGGGCGGC
CAACGAGGTGCCGCAGCTCAAAGACTTCGAGAAGCGCCAGTTCCCAGCCA
CCCGCGACCGCATCTGGGGCGGCGGCGGCGCGGCGGCGGCGCTCGCCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5498:509..1608+

>mRNA_P-wetherbeei_contig5498.1.1 ID=mRNA_P-wetherbeei_contig5498.1.1|Name=mRNA_P-wetherbeei_contig5498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig5498:509..1608+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGACACGCCGAGGCCGCGCCTGCTGACGGTGCGGGAGCGCTCGCTGGC
CGACACACTCCGGCACATCGCCAGTGTGCCGCTTCTGCGCGAGGTGAAGC
ACCCGGCGGGCACGTCTTTCGGGAGCATGGGCGGCCCGTGCGCTACTCCC
CGCCTCCACAGCGGTGGCGGCGGCAGCAGCAGCGGAGGAGGAGGGGGAAA
TGGTGCGGCGGCGCGGCCACTGGTGCCGGCTCGCAGCGCCGAGGACCTCT
TTCGGAGCCTAAACACGGCCGGCGCCTGCCAGGGTGGCGGCGACGGCGGC
GGCGGCGGTGGCGGCGGGTTGATGGCCGCAACGTACCCCGTACGGCAAAG
CGGCAAGGGGCCGGGCGGCGGAAGGAGAGGCGCCGTCGACCAGCAGCTTG
GAGGCATAGACATTCACTCCGCCTTTTACGCAGCGCCGGCCGCCCGATTC
GTCACGACATACAACGAACGCCACGCGGTGCCGCTGACGCTGGGCTCATC
TCCCGGTGGTGGCGGAAGCGGCGGTGGACCAATCAAAGGTCCCGGCACAG
GTGGTGGCGGCGGTATCCGGGCCAGCGATGCCGCTATGGCCGCCGCGGGA
CGCAACGCAAGGATAGCTGCCAAGGCGGCCAAACTCCGCGAACACACGGA
GCGCGTGGCGCTGAGCGTGGCGGTGGACATGGCGAAACAGCGGCTCCGGG
GCGAACAAAGGGTCTACGGCAAGCAGCGGACGCGGCTGCGCTACCTGGCG
TGGGTGGTCAACCAGGACGCGTGGGCGGCCAACGAGGTGCCGCAGCTCAA
AGACTTCGAGAAGCGCCAGTTCCCAGCCACCCGCGACCGCATCTGGGGCG
GCGGCGGCGCGGCGGCGGCGCTCGCCGGC
back to top