mRNA_P-wetherbeei_contig5495.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5495.2.1
Unique NamemRNA_P-wetherbeei_contig5495.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Match: D7FPB1_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPB1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.160e-31
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 EVVFPGNKKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHTVNGKKIRICIGKLPAGAGPFVFKQ 204
            +V FPG KKT+AN G  LK VA KA Y  +YGCEEGKCGTCEH VNGKKIR+CIGKLPAGAGPF F Q
Sbjct:   40 DVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFTFTQ 107
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BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Match: A0A835ZB30_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB30_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.300e-27
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 EVVFPGNKKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHTVNGKKIRICIGKLPAGAGPFVFKQ 204
            + +FPG KK +   G+ALKAV AKAKY   YGCEEGKCG+CEH V GKK+R+CIGK+P G GP  F Q
Sbjct:   40 QCIFPGGKKAEGKPGEALKAVVAKAKYDAPYGCEEGKCGSCEHKVGGKKVRLCIGKVPPGNGPHTFTQ 107
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BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Match: A0A4D9CYU4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYU4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.680e-23
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 EVVFPGNKKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHT-VNGKKIRICIGKLPAGAGPFVFK 201
            EV++PGNKK +A  G+ALKAVAA+A+Y+ +YGCEEGKCG+CEH   +GKK R+CI K+P  AGP   K
Sbjct:   40 EVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTLK 107
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BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Match: A0A7S0EBW5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EBW5_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-8
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 EVVFP--GNKKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHTVNGK-KIRICIG-KLPAGA 183
            EV FP  GNK  +A  GDA+  V  KA     + C+ G+CGTCE ++NG+ K ++C G K+P GA
Sbjct:   91 EVTFPQKGNKVVKAMQGDAIGKVCQKAGIKVKFDCKNGRCGTCEVSINGRSKAKVCQGAKVPGGA 155
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BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Match: A0A6V4W587_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4W587_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 2.610e-7
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   22 KKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHTVNGKKIRICIGKLP 174
            KK  A  G  +K +A  +     Y C+EG C TCE TVNG+++++C+GK+P
Sbjct:   88 KKALAIGGQRMKDIARASGIPVVYDCQEGTCKTCEATVNGQRMKLCVGKMP 138
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BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Match: A0A7S2CLX4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLX4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.440e-5
Identity = 22/61 (36.07%), Postives = 33/61 (54.10%), Query Frame = 1 
Query:   22 KKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHTVNGKKIRICIGKLPAGAGPFVFKQ 204
            KK +   G  ++ V   A+    + C +GKCGTCE  VNG+K R+C   +P   GP   ++
Sbjct:   93 KKVKGIPGQQMRVVVQAARAPIKFDCGDGKCGTCESLVNGRKTRVCKFAVPK-KGPVKIEK 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5495.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FPB1_ECTSI1.160e-3175.002Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835ZB30_9STRA4.300e-2763.242Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9CYU4_9STRA5.680e-2361.762Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S0EBW5_9EUKA1.110e-846.15Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6V4W587_9EUKA2.610e-743.14Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2CLX4_9STRA4.440e-536.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5495contigP-wetherbeei_contig5495:1350..1762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LD52
PFAMsFer2
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.34e-09
EggNOG OGs2EAS1@1|root,2SGYY@2759|Eukaryota
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-15_004070.1
Description2Fe-2S iron-sulfur cluster binding domain
Cds size207
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.4551787-CDS-P-wetherbeei_contig5495:1349..14651683186819.4551787-CDS-P-wetherbeei_contig5495:1349..1465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5495 1350..1465 +
1683186819.4672582-CDS-P-wetherbeei_contig5495:1671..17621683186819.4672582-CDS-P-wetherbeei_contig5495:1671..1762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5495 1672..1762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5495.2.1prot_P-wetherbeei_contig5495.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5495 1350..1762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5495.2.1

>prot_P-wetherbeei_contig5495.2.1 ID=prot_P-wetherbeei_contig5495.2.1|Name=mRNA_P-wetherbeei_contig5495.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
EVVFPGNKKTQANSGDALKAVAAKAKYSCSYGCEEGKCGTCEHTVNGKKI
RICIGKLPAGAGPFVFKQ*
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mRNA from alignment at P-wetherbeei_contig5495:1350..1762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5495.2.1 ID=mRNA_P-wetherbeei_contig5495.2.1|Name=mRNA_P-wetherbeei_contig5495.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=413bp|location=Sequence derived from alignment at P-wetherbeei_contig5495:1350..1762+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTGGTCTTCCCCGGCAACAAGAAGACGCAAGCCAACTCGGGCGACGC
TCTCAAGGCGGTGGCGGCCAAGGCGAAATACAGCTGCAGCTACGGCTGCG
AGGAGGGCAAATGCGGGTGAGTTGCCTTTCATTCTTGCTTTGCCGGTTGC
CTCCTTCGCCGCCCTTTTGTAACTCTATTTTTCCATGAAGGATTTCCCCA
TTCAGCCTTTGTAAATAATTCTTGGGAGATCTGTGCAACGTGAAGAACGT
GAAGACGGGTTCACCAACGCTGTTCTCCTTTTCCCCTTCTTTCTCTCTTC
GTTCGCGTCAAAAATCATGTAGAACATGCGAGCACACGGTCAACGGGAAG
AAGATCCGAATCTGCATCGGCAAGCTGCCCGCCGGCGCCGGACCCTTCGT
TTTCAAGCAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5495:1350..1762+

>mRNA_P-wetherbeei_contig5495.2.1 ID=mRNA_P-wetherbeei_contig5495.2.1|Name=mRNA_P-wetherbeei_contig5495.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5495:1350..1762+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTGGTCTTCCCCGGCAACAAGAAGACGCAAGCCAACTCGGGCGACGC
TCTCAAGGCGGTGGCGGCCAAGGCGAAATACAGCTGCAGCTACGGCTGCG
AGGAGGGCAAATGCGGAACATGCGAGCACACGGTCAACGGGAAGAAGATC
CGAATCTGCATCGGCAAGCTGCCCGCCGGCGCCGGACCCTTCGTTTTCAA
GCAGTAG
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