mRNA_P-wetherbeei_contig54935.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A4R7PCZ0_9GAMM (RND family efflux transporter MFP subunit n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7PCZ0_9GAMM) HSP 1 Score: 157 bits (397), Expect = 2.190e-44 Identity = 79/129 (61.24%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 1 VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITVA 387
V + IDAL + GEVLR+V+SG VTRGF+VK++IP T GL PGMFGR +F IGK+ + +P + LVDRGGL+GVYVVDA RL+FRWLRT + D VVLAGL+ ER++ APTS MREGDRI A
Sbjct: 224 VDVQIDALRAPIRGEVLRLVASGDPVTRGFQVKVSIPPTQGLLPGMFGRGQFTIGKKQALVVPASTLVDRGGLTGVYVVDAGQRLNFRWLRTEHGAADGFVVLAGLEPNERVIVAPTSRMREGDRIAAA 352
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A318E6J2_9GAMM (RND family efflux transporter MFP subunit n=1 Tax=Sinimarinibacterium flocculans TaxID=985250 RepID=A0A318E6J2_9GAMM) HSP 1 Score: 139 bits (351), Expect = 7.960e-38 Identity = 69/129 (53.49%), Postives = 93/129 (72.09%), Query Frame = 1
Query: 1 VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITVA 387
V + +DA+ ++ +GEV+R VSSG+ VTRGFEVKIA+PA+ GL PGMFGR+ F +G+R + +P +AL DRGGL GV+V + +L FRWLRTG+ V D + AGLD GERIV + MR+GD + A
Sbjct: 194 VAVKVDAVQQSFSGEVVRRVSSGNPVTRGFEVKIALPASSGLLPGMFGRAAFTVGQRQALVVPLSALADRGGLKGVFVAGPDQKLRFRWLRTGHIVADGVLAEAGLDAGERIVERVPADMRDGDVLAAA 322
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: UPI001CF85036 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Ferribacterium limneticum TaxID=76259 RepID=UPI001CF85036) HSP 1 Score: 131 bits (329), Expect = 5.030e-34 Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 7 ISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRIT 381
+SID L TL G V RVV SG VTR + VKIA+P GL PGMFGR+ F IG +P ALV+RGGL+GV+VVD E R HFRWLRTG D V AGLD ERIV+ +R+GDRIT
Sbjct: 261 VSIDGLPTTLKGTVSRVVPSGDPVTRSYLVKIALPEKEGLMPGMFGRASFAIGTSHVPVVPRRALVERGGLNGVFVVDEEGRAHFRWLRTGREWTDQVEVSAGLDANERIVAVAEPALRDGDRIT 385
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A848G3K1_9RHOO (Efflux RND transporter periplasmic adaptor subunit n=7 Tax=Betaproteobacteria TaxID=28216 RepID=A0A848G3K1_9RHOO) HSP 1 Score: 128 bits (322), Expect = 3.110e-33 Identity = 67/130 (51.54%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 7 ISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITVAAGP 396
+SID+L L G V RVV SG VTR ++VKIA+P T GL PGMFGR+ F +G+ P +P AL +RGGL+GV+V+D E R FRWLRTG D V AGL ER V+A +REGDR+ P
Sbjct: 230 VSIDSLPAPLKGTVTRVVPSGDPVTRSYQVKIALPETVGLMPGMFGRAVFTVGESPSPVVPRRALAERGGLTGVFVLDGEGRARFRWLRTGREWPDRVEVSAGLAADERFVAAVEPALREGDRVMPVEAP 359
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A7R7JC61_9GAMM (RND transporter n=2 Tax=Thiohalobacter sp. COW1 TaxID=2795687 RepID=A0A7R7JC61_9GAMM) HSP 1 Score: 127 bits (318), Expect = 1.080e-32 Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 7 ISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITVA 387
+S+D+L L+G V RVV SG V+R ++VKIA+P TPGL PGMFGR+ F +G+ P +P AL +RGGL+GV+VVD E FRWLRTG D V AGL ER V+A +REGDR+ A
Sbjct: 224 VSLDSLPAPLSGRVTRVVPSGDPVSRRYQVKIALPETPGLMPGMFGRAVFTLGESPAPVVPRRALTERGGLTGVFVVDGEGLARFRWLRTGREWPDRVEVSAGLAADERFVAAVEPALREGDRVIPA 350
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A3D3S2P6_9GAMM (Efflux RND transporter periplasmic adaptor subunit n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D3S2P6_9GAMM) HSP 1 Score: 126 bits (316), Expect = 2.590e-32 Identity = 63/128 (49.22%), Postives = 88/128 (68.75%), Query Frame = 1
Query: 1 VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITV 384
V +++DA+ GE+LRVV S VTR +EVK+++PA GL PGMFGR++F +G+ +A+P ALV+RGGL GV+VVD ++ FRWLRT + D V AGL G+R+V AP S +R+GDR+
Sbjct: 232 VRVALDAVPGAHEGELLRVVPSADPVTRRYEVKVSLPARSGLLPGMFGRAQFYLGEESVLAVPKTALVERGGLQGVFVVDDGRQVAFRWLRTRRELDDTFEVTAGLTAGQRVVLAPPSDLRDGDRLAA 359
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A349W7G0_9BURK (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A349W7G0_9BURK) HSP 1 Score: 126 bits (316), Expect = 2.630e-32 Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 1 VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITVA 387
V +SID+L L G V RVV SG V+R ++VKIA+P T GL PGMFGR+ F +G P +P ALV+RGGL+GV+VVD E R FRWLR D V AGL ER V+AP +R+GD +T A
Sbjct: 234 VPVSIDSLPAPLQGTVSRVVPSGDPVSRSYQVKIALPETAGLMPGMFGRAAFALGASPAPLVPRRALVERGGLTGVFVVDGEGRARFRWLRIAREWPDKVEVSAGLAADERFVAAPVPALRDGDLVTAA 362
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A2N1X9Y6_9GAMM (Efflux RND transporter periplasmic adaptor subunit n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2N1X9Y6_9GAMM) HSP 1 Score: 125 bits (313), Expect = 5.160e-32 Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 7 ISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRI 378
+ IDAL + G V RVV SG VTR + VK+A+P T GL PGMFGR+ F +G + +P ALV+RGGL GV++VD FRWLRTG D V AGL GERIV+A G+REGDRI
Sbjct: 217 VKIDALTQVFEGTVSRVVPSGDPVTRSYLVKVALPETAGLMPGMFGRASFAVGDSSSLLVPAQALVERGGLRGVFLVDEAGLARFRWLRTGREWPDRIEVTAGLAAGERIVAAVDPGLREGDRI 340
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A3F2UYI4_9GAMM (Efflux RND transporter periplasmic adaptor subunit n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3F2UYI4_9GAMM) HSP 1 Score: 124 bits (312), Expect = 7.940e-32 Identity = 64/127 (50.39%), Postives = 90/127 (70.87%), Query Frame = 1
Query: 1 VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQV-VLAGLDEGERIVSAPTSGMREGDRI 378
V + +DAL LTG V+R+V SG VTR + VKI++P L PGMFGR+ F++G+ I +P +A+V+RGGL GV+VVD + HFRWLR G R AQV V+AGL + E++V++P + ++EGDRI
Sbjct: 217 VQLQLDALSHPLTGAVIRIVRSGDPVTRSYPVKISVPENADLMPGMFGRALFELGQTDNILLPRSAVVERGGLKGVFVVDKDDLAHFRWLRLG-REWPAQVEVIAGLQQDEQVVASPAASLKEGDRI 342
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Match: A0A2E0LGB7_9GAMM (Efflux transporter periplasmic adaptor subunit n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E0LGB7_9GAMM) HSP 1 Score: 124 bits (312), Expect = 8.380e-32 Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query: 1 VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSEFQIGKRPEIAIPPAALVDRGGLSGVYVVDAESRLHFRWLRTGNRVGDAQVVLAGLDEGERIVSAPTSGMREGDRITVA 387
V + IDA GR GEV+R+VSSG VTR ++VKI++ T GL PGMFGRS F I R I +P AAL +RGGL+GV+VV A L FRW+RTG D + AGL+ GE +++ +G+ +GD + A
Sbjct: 226 VEVRIDATGRAYAGEVVRLVSSGDPVTRRYQVKISLADTDGLVPGMFGRSAFTIATRDSILVPAAALAERGGLTGVFVVQAGGVLRFRWVRTGRNFADRTEITAGLEPGETLLARVPAGVSDGDLLAGA 354 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54935.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig54935.1.1 >prot_P-wetherbeei_contig54935.1.1 ID=prot_P-wetherbeei_contig54935.1.1|Name=mRNA_P-wetherbeei_contig54935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp VTISIDALGRTLTGEVLRVVSSGSAVTRGFEVKIAIPATPGLTPGMFGRSback to top mRNA from alignment at P-wetherbeei_contig54935:3..407+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig54935.1.1 ID=mRNA_P-wetherbeei_contig54935.1.1|Name=mRNA_P-wetherbeei_contig54935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig54935:3..407+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig54935:3..407+ >mRNA_P-wetherbeei_contig54935.1.1 ID=mRNA_P-wetherbeei_contig54935.1.1|Name=mRNA_P-wetherbeei_contig54935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig54935:3..407+ (Phaeothamnion wetherbeei SAG_119_79)back to top |