mRNA_P-wetherbeei_contig54880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54880.1.1
Unique NamemRNA_P-wetherbeei_contig54880.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54880.1.1 vs. uniprot
Match: UPI001C3E2FDF (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E2FDF)

HSP 1 Score: 189 bits (480), Expect = 3.010e-59
Identity = 99/138 (71.74%), Postives = 111/138 (80.43%), Query Frame = 1 
Query:    7 GRGGRSHRRALRAGELEWWRAQGVATIVSAMSTRHCLADYAEQGFNVRWHPLRDPEQARADLGPLAEEVGHLLDADPEGAVLVHCDLANEWLAAIDARLRLSLGLARTARTALRAAAADGLPVGSLATSIVGRTMSAA 420
            GR GR+HRR LR  E+ WWR +GV ++VS M TRH LA+YA+ G  VRWHPLRDPEQAR  L  LA+ V  LL+ D EGAVLVHCD ANEWLAAIDA LR++LGLAR  R+ALRAAAADGLPVGSLATSIVGR MSAA
Sbjct:   21 GRCGRNHRRDLRGSEIAWWRERGVTSVVSGMRTRHALAEYADLGLTVRWHPLRDPEQARRGLNELADAVRELLERD-EGAVLVHCDCANEWLAAIDATLRMTLGLARDRRSALRAAAADGLPVGSLATSIVGRPMSAA 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C3E2FDF3.010e-5971.74hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54880contigP-wetherbeei_contig54880:102..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size426
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.7766051-CDS-P-wetherbeei_contig54880:101..5271683186818.7766051-CDS-P-wetherbeei_contig54880:101..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54880 102..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54880.1.1prot_P-wetherbeei_contig54880.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54880 102..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54880.1.1

>prot_P-wetherbeei_contig54880.1.1 ID=prot_P-wetherbeei_contig54880.1.1|Name=mRNA_P-wetherbeei_contig54880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
RRGRGGRSHRRALRAGELEWWRAQGVATIVSAMSTRHCLADYAEQGFNVR
WHPLRDPEQARADLGPLAEEVGHLLDADPEGAVLVHCDLANEWLAAIDAR
LRLSLGLARTARTALRAAAADGLPVGSLATSIVGRTMSAAA*
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mRNA from alignment at P-wetherbeei_contig54880:102..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54880.1.1 ID=mRNA_P-wetherbeei_contig54880.1.1|Name=mRNA_P-wetherbeei_contig54880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig54880:102..527- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGGGGCGCGGCGGGCGCAGCCACCGACGCGCCCTGCGGGCGGGTGA
GCTGGAGTGGTGGCGGGCCCAGGGCGTGGCGACGATCGTGTCCGCGATGT
CCACCCGCCACTGCCTCGCCGACTACGCCGAGCAGGGCTTCAACGTGCGC
TGGCATCCTCTCCGAGATCCCGAGCAGGCGCGCGCCGATCTCGGGCCTCT
GGCAGAGGAGGTGGGTCACCTCCTGGACGCCGACCCCGAGGGGGCGGTCC
TCGTACATTGCGACCTGGCGAACGAGTGGCTCGCCGCCATCGACGCTCGC
CTTCGGCTCTCCCTTGGCCTGGCGCGAACCGCGCGAACGGCCCTCCGCGC
GGCTGCGGCCGACGGGCTGCCTGTAGGATCGCTCGCGACGTCGATCGTGG
GTCGCACCATGTCGGCGGCGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54880:102..527-

>mRNA_P-wetherbeei_contig54880.1.1 ID=mRNA_P-wetherbeei_contig54880.1.1|Name=mRNA_P-wetherbeei_contig54880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig54880:102..527- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGGGGCGCGGCGGGCGCAGCCACCGACGCGCCCTGCGGGCGGGTGA
GCTGGAGTGGTGGCGGGCCCAGGGCGTGGCGACGATCGTGTCCGCGATGT
CCACCCGCCACTGCCTCGCCGACTACGCCGAGCAGGGCTTCAACGTGCGC
TGGCATCCTCTCCGAGATCCCGAGCAGGCGCGCGCCGATCTCGGGCCTCT
GGCAGAGGAGGTGGGTCACCTCCTGGACGCCGACCCCGAGGGGGCGGTCC
TCGTACATTGCGACCTGGCGAACGAGTGGCTCGCCGCCATCGACGCTCGC
CTTCGGCTCTCCCTTGGCCTGGCGCGAACCGCGCGAACGGCCCTCCGCGC
GGCTGCGGCCGACGGGCTGCCTGTAGGATCGCTCGCGACGTCGATCGTGG
GTCGCACCATGTCGGCGGCGGCGTGA
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