mRNA_P-wetherbeei_contig5485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5485.1.1
Unique NamemRNA_P-wetherbeei_contig5485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5485contigP-wetherbeei_contig5485:2303..3596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1296
Hectar predicted targeting categoryother localisation
Exons1
Cds size1014
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.4751756-UTR-P-wetherbeei_contig5485:2302..25821683186818.4751756-UTR-P-wetherbeei_contig5485:2302..2582Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5485 2303..2582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.4953606-CDS-P-wetherbeei_contig5485:2582..35961683186818.4953606-CDS-P-wetherbeei_contig5485:2582..3596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5485 2583..3596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5485.1.1prot_P-wetherbeei_contig5485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5485 2583..3596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5485.1.1

>prot_P-wetherbeei_contig5485.1.1 ID=prot_P-wetherbeei_contig5485.1.1|Name=mRNA_P-wetherbeei_contig5485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=338bp
MHPWGFGSRRQPSRASSESGADASRSDAPTELEDPTGAAMMAPVAGVGGG
GSAARSGMSVADLKALTAQRVKKVQYQQKPQPPLLKQQLHHQQPQQLQRT
GGPPSLPSQQAQHSSQSSALRPGLPSQALSLAAAAAAASAAAPPSPLPQT
LQPPRSAATAKMSSAPPGPGVHHQRSRSAGHVQLHNVALAAAAAGSPGPP
PLALGVPPFAHPSAAQRRALLHTYATAPPGILLDVTGAVGGGGGVAGPDG
LTPPPPKGRAPVPAGAVPASRLPHGLTVEELKGLTKLRLQAQGVAMPGAA
TASVSSSTSSAAAAAGASAGVSPAGTHSRTAPGASEDS
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mRNA from alignment at P-wetherbeei_contig5485:2303..3596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5485.1.1 ID=mRNA_P-wetherbeei_contig5485.1.1|Name=mRNA_P-wetherbeei_contig5485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-wetherbeei_contig5485:2303..3596+ (Phaeothamnion wetherbeei SAG_119_79)
ACATTTGAGGAGAGCTCGAAACACACCCGGCGCAGTGGAAGGAGCCCACA
CACCCCTTCTGCATGAAAAATTCAGCCCCGGATGATGCGATCGTGTCATT
GTCAATGTTGTTGAAGGGTGCCACTCACACGAAGGGAAGAGTACCCGCCA
GGCCTGTGAAGACAAACAGTTCTCCGACGCTGTGGTTCTCTGGTGGATGC
ATCTGGAGTCGGCGGCGCTCGTGAGCATTCGCCAGTCTGAGGGACGCTTT
CGACCGTCATCGAAACTTGCCGGGTGAGACATGCACCCTTGGGGATTCGG
AAGCCGTAGGCAGCCAAGTCGCGCATCAAGCGAATCCGGAGCTGATGCAT
CACGCTCGGATGCTCCCACGGAGCTCGAGGATCCTACGGGCGCGGCTATG
ATGGCCCCAGTGGCCGGTGTCGGCGGAGGTGGCTCGGCGGCGCGGAGCGG
AATGTCTGTGGCGGATTTGAAGGCGCTCACTGCGCAGCGAGTGAAGAAGG
TGCAGTATCAGCAGAAGCCACAGCCGCCGTTACTCAAACAGCAGCTGCAC
CACCAGCAACCGCAGCAACTCCAAAGAACAGGAGGACCGCCCTCGCTGCC
GTCACAGCAGGCACAGCACAGCTCGCAATCATCCGCTCTGCGACCAGGGC
TACCCTCGCAGGCGCTGTCGCTCGCAGCGGCGGCGGCGGCGGCTTCCGCG
GCCGCGCCGCCATCCCCGCTGCCGCAAACGCTGCAACCACCTCGATCAGC
TGCGACAGCAAAAATGTCGAGCGCACCACCGGGGCCGGGTGTCCACCACC
AGCGGTCGCGCTCCGCCGGCCATGTGCAGCTCCACAACGTCGCGCTGGCG
GCCGCTGCTGCCGGCTCGCCGGGGCCGCCGCCGCTGGCATTAGGAGTCCC
GCCATTTGCCCACCCATCGGCGGCGCAGCGCCGCGCGCTGCTCCACACCT
ACGCGACGGCGCCGCCCGGAATCTTGCTCGATGTGACGGGCGCGGTCGGT
GGCGGCGGCGGCGTGGCGGGGCCGGACGGGCTGACGCCGCCGCCACCAAA
GGGGAGGGCGCCAGTGCCGGCCGGGGCGGTGCCGGCGTCGCGGCTGCCGC
ACGGCCTGACGGTGGAGGAGCTGAAGGGCCTCACCAAGCTGCGGCTGCAG
GCGCAGGGGGTGGCGATGCCGGGCGCCGCCACGGCATCGGTTTCGTCGTC
CACGTCGTCGGCGGCGGCGGCGGCGGGGGCGTCTGCTGGCGTATCGCCGG
CGGGAACGCACTCCCGGACCGCGCCGGGCGCCTCAGAGGATTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5485:2303..3596+

>mRNA_P-wetherbeei_contig5485.1.1 ID=mRNA_P-wetherbeei_contig5485.1.1|Name=mRNA_P-wetherbeei_contig5485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1014bp|location=Sequence derived from alignment at P-wetherbeei_contig5485:2303..3596+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCCTTGGGGATTCGGAAGCCGTAGGCAGCCAAGTCGCGCATCAAG
CGAATCCGGAGCTGATGCATCACGCTCGGATGCTCCCACGGAGCTCGAGG
ATCCTACGGGCGCGGCTATGATGGCCCCAGTGGCCGGTGTCGGCGGAGGT
GGCTCGGCGGCGCGGAGCGGAATGTCTGTGGCGGATTTGAAGGCGCTCAC
TGCGCAGCGAGTGAAGAAGGTGCAGTATCAGCAGAAGCCACAGCCGCCGT
TACTCAAACAGCAGCTGCACCACCAGCAACCGCAGCAACTCCAAAGAACA
GGAGGACCGCCCTCGCTGCCGTCACAGCAGGCACAGCACAGCTCGCAATC
ATCCGCTCTGCGACCAGGGCTACCCTCGCAGGCGCTGTCGCTCGCAGCGG
CGGCGGCGGCGGCTTCCGCGGCCGCGCCGCCATCCCCGCTGCCGCAAACG
CTGCAACCACCTCGATCAGCTGCGACAGCAAAAATGTCGAGCGCACCACC
GGGGCCGGGTGTCCACCACCAGCGGTCGCGCTCCGCCGGCCATGTGCAGC
TCCACAACGTCGCGCTGGCGGCCGCTGCTGCCGGCTCGCCGGGGCCGCCG
CCGCTGGCATTAGGAGTCCCGCCATTTGCCCACCCATCGGCGGCGCAGCG
CCGCGCGCTGCTCCACACCTACGCGACGGCGCCGCCCGGAATCTTGCTCG
ATGTGACGGGCGCGGTCGGTGGCGGCGGCGGCGTGGCGGGGCCGGACGGG
CTGACGCCGCCGCCACCAAAGGGGAGGGCGCCAGTGCCGGCCGGGGCGGT
GCCGGCGTCGCGGCTGCCGCACGGCCTGACGGTGGAGGAGCTGAAGGGCC
TCACCAAGCTGCGGCTGCAGGCGCAGGGGGTGGCGATGCCGGGCGCCGCC
ACGGCATCGGTTTCGTCGTCCACGTCGTCGGCGGCGGCGGCGGCGGGGGC
GTCTGCTGGCGTATCGCCGGCGGGAACGCACTCCCGGACCGCGCCGGGCG
CCTCAGAGGATTCT
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