mRNA_P-wetherbeei_contig54839.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A853G6K4_9BURK (MarR family transcriptional regulator n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853G6K4_9BURK) HSP 1 Score: 140 bits (353), Expect = 6.330e-40 Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTTHPFDLSNES 399
AD+VL + GLGR HHR+LHFA R PGI+V L+ +L ISNQA+SR+T+QL S GLLEQRYS EDRRVR +++T G A L+ LT +QL +I + +L+A ++ G W+ L M+RP D WVT ++ + S
Sbjct: 34 ADEVLAKLGLGRTHHRILHFAARKPGISVNELLEILSISNQAMSRSTSQLMSKGLLEQRYSAEDRRVRQHYVTAQGAAFLEDLTRQQLEVIRRSHQQLSAQQVHGFWDVLDTMIRPNDRKWVTAQIQEIPDTS 166
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A368XN59_9BURK (DNA-binding MarR family transcriptional regulator n=1 Tax=Pseudorhodoferax soli TaxID=545864 RepID=A0A368XN59_9BURK) HSP 1 Score: 140 bits (353), Expect = 1.350e-39 Identity = 68/126 (53.97%), Postives = 90/126 (71.43%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTTHP 378
+D++L EHGLGRPHHRVL+FA +PGITVG L +LLRISNQALSRT Q+ ++GL+EQ Y +DRRVR + +T G ALL E+Q A+I A A+IE W L+++ RPED+ W++ HP
Sbjct: 53 SDRILAEHGLGRPHHRVLYFAQLSPGITVGELTTLLRISNQALSRTMQQIATLGLIEQCYCPDDRRVRRHFVTEQGAALLARSKEKQFAVIRKAHLACPQADIEAFWRTLTLLSRPEDLVWISRHP 178
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A418V1K9_RHOPL (MarR family transcriptional regulator n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A418V1K9_RHOPL) HSP 1 Score: 113 bits (283), Expect = 2.610e-29 Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTT 372
A+QVL H LGR HHRVL+F + PGITV L+S+LRI+NQALSRT NQL M L+EQ+ +DRR R N TP G AL + LT Q I + + + +++ W+ L MVR +D AW+TT
Sbjct: 43 ANQVLALHKLGRAHHRVLYFVVQQPGITVNELISILRITNQALSRTINQLAQMQLIEQKPGQQDRRHRCNFPTPKGIALCRQLTRLQYQHIDRSLAGVPREDLKVFWDVLLRMVREKDRAWITT 166
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: UPI001B3B9EE0 (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI001B3B9EE0) HSP 1 Score: 108 bits (270), Expect = 3.720e-27 Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPED 354
AD +L ++G GRPHHRVL+F R PGITV ++++LR++NQALSR NQL L+EQR+ + DRR R ++LTP G AL L + Q + A L + G W L+ M+ ED
Sbjct: 46 ADAILADYGFGRPHHRVLYFVARRPGITVNEILAILRVTNQALSRVMNQLIEAELIEQRHDSADRRRRQHYLTPKGAALDHQLCQEQFRRVRRAYQSLPRDAVLGFWATLNAMIAEED 163
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: UPI001748331F (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Camelimonas fluminis TaxID=1576911 RepID=UPI001748331F) HSP 1 Score: 107 bits (267), Expect = 5.900e-27 Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVT 369
ADQVL ++ LGRPHHRVL+F + PGITV L+S LRI+NQA SRT NQL M L+EQR DRR R ++ T +G L + L++ Q + + ++ W+ L +VR +D AW+T
Sbjct: 40 ADQVLADYKLGRPHHRVLYFVVQRPGITVNELLSTLRITNQAFSRTINQLVQMNLVEQRMGNGDRRYRCHYPTKEGVELSQRLSQLQYEHVSECLKDVPMGDLGLFWDVLLRLVREQDRAWIT 162
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A318SSL0_9RHOB (MarR family transcriptional regulator n=1 Tax=Pseudoroseicyclus aestuarii TaxID=1795041 RepID=A0A318SSL0_9RHOB) HSP 1 Score: 100 bits (249), Expect = 3.110e-24 Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 4 DQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPE 351
D++L E GLGR HHR +HF R+PG TVG+L++LL ++ Q+L+R L GL+ QR T DRR R HLTP+G+AL + L++ Q + AA R A + G L M+ PE
Sbjct: 38 DRILEERGLGRAHHRAIHFIHRSPGATVGTLLTLLGVTKQSLNRVLRTLVEEGLVVQRIGTSDRRERRLHLTPEGEALERALSDAQRERLRAAYRRAGPAAVAGFREVLEAMMDPE 153
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A2E2E2L9_9PROT (MarR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2E2L9_9PROT) HSP 1 Score: 97.4 bits (241), Expect = 7.420e-23 Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTTHP 378
AD+ + E GR HHR+L+F + PGITVG ++S+LR+S+Q + R + + G +EQ+ S DRR R + T G L LTERQ I A + G W L M+ P D +WV P
Sbjct: 57 ADRQMAEMSFGRTHHRILYFVKQKPGITVGEMLSVLRVSHQNIQRALSGMIRQGFIEQKTSMHDRRQRQLYATESGTVLFNQLTERQFQRISRAYRAAGPEAVNGFWKVLWHMIEPSDQSWVIRKP 182
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: S9QU07_9RHOB (Transcriptional regulator n=2 Tax=Rubellimicrobium TaxID=295418 RepID=S9QU07_9RHOB) HSP 1 Score: 96.7 bits (239), Expect = 1.370e-22 Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 4 DQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPE 351
D++L E G+GR HHR LHF GR PG TVG L++LL ++ Q+L+R +LT GL+E R EDRR R HLT G+AL + L++ Q + AA ++G L M+ PE
Sbjct: 48 DRILAERGMGRAHHRALHFIGRAPGTTVGRLLTLLGVTKQSLNRVLRRLTEDGLVEVRVGREDRRERHLHLTESGRALERALSDAQRERMRAAYRAAGPQAVQGFRQVLEAMMDPE 163
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: UPI0014854243 (MarR family transcriptional regulator n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0014854243) HSP 1 Score: 96.7 bits (239), Expect = 1.710e-22 Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWV 366
A++ L +GR HHR+L+F +TPGITVG L SLLR+++QA+ R L G ++Q+ S+ DRR R TP G AL + L++RQ + A + + + G W LS MV P D W+
Sbjct: 49 ANRQLAALDMGRTHHRILYFTVQTPGITVGELTSLLRVTHQAIQRPMGDLVRGGYIQQQMSSVDRRQRQLFSTPKGLALFEQLSQRQFERLARAYEKAGSEAVMGFWAVLSAMVEPADHEWI 170
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A7D5RUY0_9PROT (Winged helix-turn-helix transcriptional regulator n=1 Tax=Defluviicoccus sp. TaxID=2682137 RepID=A0A7D5RUY0_9PROT) HSP 1 Score: 95.5 bits (236), Expect = 7.140e-22 Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPED 354
AD +L+ +G GR HHRV+ F GR PG+TVG L+++L+I+ Q+L+R QL G + QR DRR R +LT +AL + LTERQ A I A S EG L MV PED
Sbjct: 81 ADTLLVRYGFGRAHHRVIWFIGREPGMTVGELLAILKITKQSLARVLGQLMDGGFVVQRICPGDRRRRKLYLTRGXEALARTLTERQAARIAQAWSATGKDAAEGFRAVLRAMVNPED 198 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig54839.1.1 >prot_P-wetherbeei_contig54839.1.1 ID=prot_P-wetherbeei_contig54839.1.1|Name=mRNA_P-wetherbeei_contig54839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp MEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLback to top mRNA from alignment at P-wetherbeei_contig54839:2..403+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig54839.1.1 ID=mRNA_P-wetherbeei_contig54839.1.1|Name=mRNA_P-wetherbeei_contig54839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig54839:2..403+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig54839:2..403+ >mRNA_P-wetherbeei_contig54839.1.1 ID=mRNA_P-wetherbeei_contig54839.1.1|Name=mRNA_P-wetherbeei_contig54839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig54839:2..403+ (Phaeothamnion wetherbeei SAG_119_79)back to top |