mRNA_P-wetherbeei_contig5483.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5483.1.1
Unique NamemRNA_P-wetherbeei_contig5483.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A7S4DKP8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKP8_HETAK)

HSP 1 Score: 177 bits (450), Expect = 3.060e-50
Identity = 86/173 (49.71%), Postives = 120/173 (69.36%), Query Frame = 1
Query:   10 PAAWQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYNPDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESPT-IGYEGQV 525
            P  +Q L GG  + L LGTLY WGN++ Y+TSYLR  NP++T  +TL +    +  QA  M AGG+++  LG  LTA  GG +L+GG++ SS+A +L  F+  YGV FG+G+ LAY CPL CGF WMP+ +G VSG IV+GFGGGAFVFN +A+   NPE+ + + +G +G++
Sbjct:   11 PPQYQVLIGGFAIQLVLGTLYCWGNLTTYITSYLRQLNPELTYSDTLLVYVSIIGTQALTMWAGGIVEEKLGPGLTAFLGGSILSGGIIFSSLARSLWAFIALYGVCFGLGLALAYPCPLSCGFQWMPRHKGLVSGFIVSGFGGGAFVFNQVATRLANPEDATASEVGADGRL 183          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: UPI000B458016 (uncharacterized protein LOC110457591 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B458016)

HSP 1 Score: 161 bits (407), Expect = 4.110e-47
Identity = 75/169 (44.38%), Postives = 120/169 (71.01%), Query Frame = 1
Query:    7 RPAAWQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYN--PDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLS--SMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESP 501
            R   +  + GG+++HL LGT+Y +GN++ Y+TSY+R  N   ++T  ++L+++A A +GQ   +  GG+L   LG RLT L GGW+ +GGVLL+  ++ ++    V+TYG MFG G+G+AY+ P+ CG  W+P +RG V+G++VAGFGGGAF+F+ + + Y+NP+N +P
Sbjct:   19 RLRGYVVIIGGILVHLTLGTVYTFGNMTPYMTSYMRKKNVSAELTYADSLWVMAVAAMGQGASVFIGGILHRKLGTRLTTLLGGWISSGGVLLTYFTIQSSFGLTVLTYGAMFGFGVGIAYATPMGCGMKWLPDKRGLVNGLVVAGFGGGAFIFDQVQTAYLNPDNLAP 187          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A3S1CE33_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1CE33_ELYCH)

HSP 1 Score: 160 bits (406), Expect = 1.060e-44
Identity = 76/157 (48.41%), Postives = 113/157 (71.97%), Query Frame = 1
Query:   34 GGVILHLCLGTLYLWGNVSVYVTSYLRLYN--PDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTLAQF--VVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPEN 492
            GG+++HL LGTLY +GN++ Y+TSY+R     P++   E  ++ A A +GQ  VM+  GL+Q  LG RLT L GGWL++ GVL++     ++ F  VVTYG++FG GIG++Y+ PL CG  W P+R+G V+G++VAGFGGGAF+FN + + ++NP+N
Sbjct:   17 GGILVHLSLGTLYTFGNLNPYLTSYMRWTGTAPNLKNTECTWVFAAAAIGQGLVMSLSGLIQKKLGPRLTCLLGGWLMSFGVLVTYFTIEISFFLTVVTYGLLFGAGIGISYTMPLSCGMKWFPERKGLVNGLVVAGFGGGAFIFNQVQTAFINPDN 173          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A210Q8L5_MIZYE (MFS-type transporter YhjX n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q8L5_MIZYE)

HSP 1 Score: 161 bits (407), Expect = 1.220e-44
Identity = 75/169 (44.38%), Postives = 120/169 (71.01%), Query Frame = 1
Query:    7 RPAAWQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYN--PDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLS--SMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESP 501
            R   +  + GG+++HL LGT+Y +GN++ Y+TSY+R  N   ++T  ++L+++A A +GQ   +  GG+L   LG RLT L GGW+ +GGVLL+  ++ ++    V+TYG MFG G+G+AY+ P+ CG  W+P +RG V+G++VAGFGGGAF+F+ + + Y+NP+N +P
Sbjct:   19 RLRGYVVIIGGILVHLTLGTVYTFGNMTPYMTSYMRKKNVSAELTYADSLWVMAVAAMGQGASVFIGGILHRKLGTRLTTLLGGWISSGGVLLTYFTIQSSFGLTVLTYGAMFGFGVGIAYATPMGCGMKWLPDKRGLVNGLVVAGFGGGAFIFDQVQTAYLNPDNLAP 187          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A7E6ES92_OCTVU (oxalate:formate antiporter-like n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6ES92_OCTVU)

HSP 1 Score: 158 bits (400), Expect = 3.210e-44
Identity = 77/179 (43.02%), Postives = 115/179 (64.25%), Query Frame = 1
Query:    7 RPAAWQCL---TGGVILHLCLGTLYLWGNVSVYVTSYLRL--YNPDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLS--SMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESPTIGYEGQ 522
             P  W+ +    GGVI H   G  Y +GN + Y+ SY+R     PD+   E+++I A  +LGQ      GG+L+ ++G RLT L G W+++GGVLL+  S++ + A  ++TYG++FG G+GLAY  P+ C   WMP R+GFV+G +VAG+GGGAF+FN + + ++NP N SP I   G+
Sbjct:    8 HPPLWRLVLVVAGGVITHTTFGATYSYGNFAPYIVSYMRYKKVEPDLQYNESVWIFAMVLLGQGTTGFIGGMLERLIGPRLTTLTGSWIMSGGVLLTYFSVSHSFASCLITYGLIFGFGVGLAYPIPMGCAMRWMPHRKGFVAGFVVAGYGGGAFIFNQVITGFINPRNLSPDIDLNGE 186          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A7S4DPI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DPI3_9EUKA)

HSP 1 Score: 161 bits (407), Expect = 3.280e-44
Identity = 74/170 (43.53%), Postives = 107/170 (62.94%), Query Frame = 1
Query:   19 WQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYNPDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESPTIGYEGQVC 528
            W     G ++HLCLGT+Y WG+++ Y+TSYLR+Y+P +T  +T+ +        A  M  GG+++  LG R TAL G W++  G LLS  ATT  Q V+T+  +FG G+G+AY  P+ CG+ W+PKR+G VSG++VAGFG G   FN + ++  NP  E P   +E  V 
Sbjct:   43 WVVALAGFMMHLCLGTMYCWGSLTPYITSYLRIYDPSVTYSDTIIVFMLTPAAMAISMPLGGIIEKRLGGRTTALLGSWIMCSGELLSVFATTTFQLVITHCFIFGFGMGVAYMNPIACGYRWLPKRKGLVSGIVVAGFGLGGAFFNLVGAMICNPNQEQPDPYFEADVA 212          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: W7TFT9_9STRA (Major facilitator superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFT9_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.620e-43
Identity = 82/173 (47.40%), Postives = 112/173 (64.74%), Query Frame = 1
Query:    4 LRPAAWQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYNPDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESPTIGYEGQ 522
            LR      + GG +LHL +GTLY +G+++VY+TSYLR+Y+P +T   T+ I A  + GQA +M  GG ++  +G R  A  G   L G  LLSSM T+L     TYG++FG G GL Y+ PLVCG+ W P+R+G VSGVI++GFG  A VFN + SV VNP N  P + Y+ +
Sbjct:    7 LRTGPKAAILGGFLLHLVMGTLYTFGSLTVYLTSYLRVYDPTVTYNNTIVIYACTIAGQALLMFLGGKIELRVGPRAAAAIGSCCLVGAPLLSSMVTSLWAMTCTYGLLFGFGGGLTYTVPLVCGYRWEPERKGLVSGVILSGFGLSALVFNQIQSVLVNPHNLKPDVVYKNK 179          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A2T7ND92_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7ND92_POMCA)

HSP 1 Score: 158 bits (400), Expect = 1.730e-42
Identity = 75/171 (43.86%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   19 WQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYN-PDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLS--SMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESPTIGYEGQ 522
            W  + GGV++HL LGTLY +GN+S Y+TSY+R ++ PD+   ++++I A   +GQ   M  GG+L+   G R+T + G W ++ GVLL+  ++  +    VVTYG+MFG+GIG+AY+ P+ CG  W+PK++G VSG +VAGFG GAF+F+ + + ++NP+N++P     G+
Sbjct:    8 WLTVAGGVLIHLTLGTLYTFGNLSPYLTSYIRKHSSPDLQYTDSVWIFAVTGMGQGTSMYFGGVLERRFGPRITVIIGAWFMSLGVLLTYFTVQYSFEAAVVTYGLMFGLGIGVAYAVPIACGMRWLPKKKGLVSGCVVAGFGAGAFIFDQVQTAFINPDNKAPNETIAGE 178          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A7S2X974_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X974_9EUKA)

HSP 1 Score: 156 bits (394), Expect = 2.050e-42
Identity = 70/160 (43.75%), Postives = 102/160 (63.75%), Query Frame = 1
Query:   19 WQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYNPDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENES 498
            W     G  +HLCLGT+Y WG  + Y+TSYLR YNP +T  +T+ +       Q   M  GG L   +G R TAL G W++A GV +S+ ATT+ Q  +TYG+++G+G+G+AY CP+ CGF W+P  +G +SG++V GFG G  +FN + +   NP N++
Sbjct:   16 WVVACAGFFMHLCLGTMYCWGAFTPYITSYLRKYNPHLTYNDTIIVFMLIPAAQTVGMPIGGTLMTKIGPRYTALIGCWIMAFGVFVSAFATTVFQTTLTYGIIYGLGMGMAYMCPIACGFKWLPTYKGLLSGIVVTGFGLGGAIFNIIGAAICNPGNKA 175          
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Match: A0A7S3YU67_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YU67_9EUKA)

HSP 1 Score: 156 bits (394), Expect = 2.810e-42
Identity = 68/170 (40.00%), Postives = 105/170 (61.76%), Query Frame = 1
Query:   19 WQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYNPDITEGETLYILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTLAQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAFVFNALASVYVNPENESPTIGYEGQVC 528
            W     G  +HLCLGT+Y WG  + Y+TSYLR Y+P +T  +T+ +     L Q   M  GG +    G R+TAL G W++A GV +S+  TT+    +TYG+++G+G+G+AY CP+ CG+ W+P  +G +SG++V GFG G  +FN + +   NP+N++ +  Y   V 
Sbjct:   30 WVVAAAGFFMHLCLGTMYCWGAFTPYITSYLRKYDPSLTYNDTIIVFMLIPLAQTIGMPIGGTMMKKYGPRVTALVGSWVMAFGVFVSAFTTTVFMTTLTYGMIYGIGMGMAYMCPIACGYKWLPNYKGLISGIVVTGFGLGGAIFNIIGAAICNPDNKAGSPYYGDDVA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5483.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DKP8_HETAK3.060e-5049.71Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI000B4580164.110e-4744.38uncharacterized protein LOC110457591 n=1 Tax=Mizuh... [more]
A0A3S1CE33_ELYCH1.060e-4448.41Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A210Q8L5_MIZYE1.220e-4444.38MFS-type transporter YhjX n=1 Tax=Mizuhopecten yes... [more]
A0A7E6ES92_OCTVU3.210e-4443.02oxalate:formate antiporter-like n=1 Tax=Octopus vu... [more]
A0A7S4DPI3_9EUKA3.280e-4443.53Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
W7TFT9_9STRA7.620e-4347.40Major facilitator superfamily n=2 Tax=Monodopsidac... [more]
A0A2T7ND92_POMCA1.730e-4243.86Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A7S2X974_9EUKA2.050e-4243.75Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3YU67_9EUKA2.810e-4240.00Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5483contigP-wetherbeei_contig5483:111..871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_75302
PFAMsMFS_1
Model size531
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.06e-45
EggNOG OGsKOG2504@1|root,KOG2504@2759|Eukaryota
Descriptionmonocarboxylate transporter
Cds size531
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.2852478-CDS-P-wetherbeei_contig5483:110..4611683186818.2852478-CDS-P-wetherbeei_contig5483:110..461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5483 111..461 -
1683186818.2971354-CDS-P-wetherbeei_contig5483:563..6731683186818.2971354-CDS-P-wetherbeei_contig5483:563..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5483 564..673 -
1683186818.3072746-CDS-P-wetherbeei_contig5483:801..8711683186818.3072746-CDS-P-wetherbeei_contig5483:801..871Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5483 802..871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5483.1.1prot_P-wetherbeei_contig5483.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5483 111..871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5483.1.1

>prot_P-wetherbeei_contig5483.1.1 ID=prot_P-wetherbeei_contig5483.1.1|Name=mRNA_P-wetherbeei_contig5483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
MLRPAAWQCLTGGVILHLCLGTLYLWGNVSVYVTSYLRLYNPDITEGETL
YILAGAMLGQACVMTAGGLLQHVLGIRLTALAGGWLLAGGVLLSSMATTL
AQFVVTYGVMFGVGIGLAYSCPLVCGFMWMPKRRGFVSGVIVAGFGGGAF
VFNALASVYVNPENESPTIGYEGQVC*
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mRNA from alignment at P-wetherbeei_contig5483:111..871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5483.1.1 ID=mRNA_P-wetherbeei_contig5483.1.1|Name=mRNA_P-wetherbeei_contig5483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=761bp|location=Sequence derived from alignment at P-wetherbeei_contig5483:111..871- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCGCCCGGCGGCATGGCAATGCTTGACGGGCGGCGTAATTCTCCA CCTGTGCCTTGGCACATTATGTAAGTGAAACCGTTTGCAGCCTTTTTTTA CCCTCCCAAACGAGATCTTGCCTCACCTTTTGCCTCTCTTTTCCATTCCC ACTTCTCCTGTTCCCGCGTCTAACTCTTCTGCATGGACCTCTGAACAGAC CTGTGGGGCAACGTCTCCGTTTATGTCACTTCATATTTGCGATTGTACAA TCCTGATATCACTGAAGGCGAAACGCTCTACATACTTGCCGGAGCAATGC TCGGGCAGGTATGTGCGCATTCCTCGTGTGCAGTGTTTCGATCGCGATGC AAGCATTATGGTAATCGCGCTGACGAATGCAACTCTCCTTGACGTCTCCG TCGCCACCAGGCATGTGTCATGACGGCCGGCGGACTCTTGCAGCATGTGC TCGGGATCCGGCTGACGGCGCTCGCCGGCGGTTGGCTCCTCGCCGGTGGC GTTCTGCTGTCGTCGATGGCGACGACCCTCGCGCAGTTCGTCGTGACGTA CGGCGTCATGTTTGGAGTAGGCATAGGCCTCGCTTACAGCTGCCCGCTGG TCTGCGGATTCATGTGGATGCCGAAACGGAGGGGTTTCGTTTCGGGCGTG ATCGTCGCCGGCTTTGGTGGCGGCGCCTTCGTGTTCAACGCCCTCGCCTC CGTCTACGTCAATCCAGAAAACGAGAGCCCCACCATCGGATATGAAGGAC AGGTATGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5483:111..871-

>mRNA_P-wetherbeei_contig5483.1.1 ID=mRNA_P-wetherbeei_contig5483.1.1|Name=mRNA_P-wetherbeei_contig5483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig5483:111..871- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCGCCCGGCGGCATGGCAATGCTTGACGGGCGGCGTAATTCTCCA
CCTGTGCCTTGGCACATTATACCTGTGGGGCAACGTCTCCGTTTATGTCA
CTTCATATTTGCGATTGTACAATCCTGATATCACTGAAGGCGAAACGCTC
TACATACTTGCCGGAGCAATGCTCGGGCAGGCATGTGTCATGACGGCCGG
CGGACTCTTGCAGCATGTGCTCGGGATCCGGCTGACGGCGCTCGCCGGCG
GTTGGCTCCTCGCCGGTGGCGTTCTGCTGTCGTCGATGGCGACGACCCTC
GCGCAGTTCGTCGTGACGTACGGCGTCATGTTTGGAGTAGGCATAGGCCT
CGCTTACAGCTGCCCGCTGGTCTGCGGATTCATGTGGATGCCGAAACGGA
GGGGTTTCGTTTCGGGCGTGATCGTCGCCGGCTTTGGTGGCGGCGCCTTC
GTGTTCAACGCCCTCGCCTCCGTCTACGTCAATCCAGAAAACGAGAGCCC
CACCATCGGATATGAAGGACAGGTATGTTAA
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