mRNA_P-wetherbeei_contig5481.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5481.1.1
Unique NamemRNA_P-wetherbeei_contig5481.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5481.1.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP)

HSP 1 Score: 129 bits (323), Expect = 5.800e-33
Identity = 65/150 (43.33%), Postives = 89/150 (59.33%), Query Frame = 1 
Query:    1 RWELLPDSSGPYLALR-GVGDGSDAFLLVCGDHFGYIADRPTPQPFDPAESATSSLQQLAATARAAASGRRSKIERYLSLQACHGRVAAGRGSAPWSIDSSLQPWLEGTPLMRPSDASVAADGGSVTWRGERWEVLECTFTAAGLQALFA 447
            RWELLP+  G YLA+R     G DA L+VCG+HF ++ DRPT  PFDP   + +SLQ L    +    G R +  +YLSL+ CHGRV+   G+  W +D++L PW  G  L+ P +  V      V W+GE+W ++E +F   GL  LFA
Sbjct:  207 RWELLPEGKGRYLAIRRDERYGRDAILIVCGNHFNFVMDRPTKMPFDPERQSHASLQDL--VDKLVQEGNREEAMKYLSLEGCHGRVS---GANAWVVDNALHPWKIGKRLLSPDEVMVKYGENKVMWKGEQWHIVEDSFGPYGLLNLFA 351
[Close]
BLAST of mRNA_P-wetherbeei_contig5481.1.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.580e-32
Identity = 73/155 (47.10%), Postives = 83/155 (53.55%), Query Frame = 1 
Query:    1 RWELLPDSSGPYLALR----GVGDGSDAFLLVCGDHFGYIADRPTPQPFDPAESATSSLQQLAATARAAASGRRSKIERYLSLQACHGRVAAGRGSAPWSIDSSLQPWLEGTPLMRPSDASVAADGGSVTWRGERWEVLECTFTAAGLQALFARG 453
            RWE +   +GPYLALR      G G DAFL+VCGDHFGY+ DR      D    A+      AA  R    G R   E YL L+ACHG    G     W ID SLQPWL GT L+  SD  +++ G    W G  W VLECTFTA  LQ L  RG
Sbjct:  193 RWERVKGGTGPYLALRRRPEASGGGRDAFLIVCGDHFGYVEDRAAAARGDWGRYASLVEVVDAAVKR----GDRGAAEAYLDLKACHGMRREG---GAWVIDYSLQPWLVGTTLLHSSDLELSSGGKEFKWNGAIWAVLECTFTAEQLQCLTGRG 340
[Close]
BLAST of mRNA_P-wetherbeei_contig5481.1.1 vs. uniprot
Match: A0A7V9TJL4_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7V9TJL4_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.850e-11
Identity = 56/152 (36.84%), Postives = 71/152 (46.71%), Query Frame = 1 
Query:    4 WELLPDSSGPYLALRGVGDGSDA-FLLVCGDHFGYIADRPTPQPFDPAESATSSLQQLAATARAAASGRRSKIERYLSLQACHGRVAAGRGSAPWSIDSSLQPWLEGTPLMRPSDASVAADGGSVTWRG---ERWEVLECTFTAAGLQALFA 447
            W  L D S  ++ +R       A  LLV GDHF Y+ +RPT  P         SL  L A+A     G+R+ I  YL  +   GRV +G  + PW I+ S  PW EG  L    D  V  D GS+  R    ++W V   T T A   ALFA
Sbjct:  129 WRSLSDGSQSFVVIRVEHLSRLARTLLVAGDHFLYVRNRPTDLPV------AESLDSLIASAH----GKRATIIEYLDCELSSGRVRSG--AVPWEIERSTLPWREGKHLDFV-DGVVVDDTGSIVPRASGHDQWSVPVNTLTLAARIALFA 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0E054_9CRYP5.800e-3343.33Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A835YWZ2_9STRA6.580e-3247.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V9TJL4_9BACT2.850e-1136.84Uncharacterized protein n=1 Tax=Gemmatimonadaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5481contigP-wetherbeei_contig5481:2..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog55529.EKX51611
Model size483
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.66e-34
EggNOG OGs2C8UU@1|root,2S355@2759|Eukaryota
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.008636-CDS-P-wetherbeei_contig5481:1..471683186818.008636-CDS-P-wetherbeei_contig5481:1..47Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5481 2..47 +
1683186818.0193982-CDS-P-wetherbeei_contig5481:101..2291683186818.0193982-CDS-P-wetherbeei_contig5481:101..229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5481 102..229 +
1683186818.0286543-CDS-P-wetherbeei_contig5481:352..6611683186818.0286543-CDS-P-wetherbeei_contig5481:352..661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5481 353..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5481.1.1prot_P-wetherbeei_contig5481.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5481 2..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5481.1.1

>prot_P-wetherbeei_contig5481.1.1 ID=prot_P-wetherbeei_contig5481.1.1|Name=mRNA_P-wetherbeei_contig5481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
RWELLPDSSGPYLALRGVGDGSDAFLLVCGDHFGYIADRPTPQPFDPAES
ATSSLQQLAATARAAASGRRSKIERYLSLQACHGRVAAGRGSAPWSIDSS
LQPWLEGTPLMRPSDASVAADGGSVTWRGERWEVLECTFTAAGLQALFAR
GRSPTLTSRL*
back to top

mRNA from alignment at P-wetherbeei_contig5481:2..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5481.1.1 ID=mRNA_P-wetherbeei_contig5481.1.1|Name=mRNA_P-wetherbeei_contig5481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig5481:2..661+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTGGGAGCTTTTGCCCGACAGCAGCGGCCCATACCTGGCGCTGCGTCG
CTGCCGGCCTTCAGAAACCCGAGGAGCCGTCGCAGCCGCGGCGAAGAGAG
GGGGCGTCGGCGACGGTTCCGACGCCTTCCTGCTGGTGTGCGGCGACCAC
TTCGGCTACATAGCGGACCGGCCGACTCCGCAGCCCTTCGACCCTGCAGA
GTCTGCCACATCCAGTTTGCAGCAGCTGGTGGACGCCGCTGCCGCCGCCG
CTGCCGATGCCGCTGCTGCCGCCGCCACCGCGGAAGCCGTAGCCGCCGGG
GCGGCAGGGACCGGTGGCGGAGTGTGGGAGCGAGATGTTGCAAGAGAAGA
GGCGGCCACGGCGCGGGCGGCGGCATCGGGTCGCCGCAGCAAGATCGAGC
GCTACCTGTCGCTGCAGGCCTGCCACGGCCGCGTGGCCGCCGGCCGCGGG
AGCGCGCCGTGGAGCATCGACTCGTCGCTGCAGCCATGGCTCGAGGGCAC
GCCACTGATGCGGCCCAGCGACGCTAGCGTGGCGGCGGATGGCGGCTCGG
TGACGTGGCGAGGGGAGAGGTGGGAAGTGCTCGAGTGCACGTTCACCGCG
GCGGGGCTGCAGGCACTCTTTGCTCGTGGCAGGTCGCCAACCCTGACCAG
CCGCCTTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5481:2..661+

>mRNA_P-wetherbeei_contig5481.1.1 ID=mRNA_P-wetherbeei_contig5481.1.1|Name=mRNA_P-wetherbeei_contig5481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig5481:2..661+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTGGGAGCTTTTGCCCGACAGCAGCGGCCCATACCTGGCGCTGCGGGG
CGTCGGCGACGGTTCCGACGCCTTCCTGCTGGTGTGCGGCGACCACTTCG
GCTACATAGCGGACCGGCCGACTCCGCAGCCCTTCGACCCTGCAGAGTCT
GCCACATCCAGTTTGCAGCAGCTGGCGGCCACGGCGCGGGCGGCGGCATC
GGGTCGCCGCAGCAAGATCGAGCGCTACCTGTCGCTGCAGGCCTGCCACG
GCCGCGTGGCCGCCGGCCGCGGGAGCGCGCCGTGGAGCATCGACTCGTCG
CTGCAGCCATGGCTCGAGGGCACGCCACTGATGCGGCCCAGCGACGCTAG
CGTGGCGGCGGATGGCGGCTCGGTGACGTGGCGAGGGGAGAGGTGGGAAG
TGCTCGAGTGCACGTTCACCGCGGCGGGGCTGCAGGCACTCTTTGCTCGT
GGCAGGTCGCCAACCCTGACCAGCCGCCTTTAA
back to top