mRNA_P-wetherbeei_contig54766.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54766.1.1
Unique NamemRNA_P-wetherbeei_contig54766.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A7C4TJA4_9ACTN (LLM class flavin-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C4TJA4_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 2.860e-16
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWRLEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHAVVDA--QTIAGMSFTGTASQLRRRAEALSADGVTELAVQPGG-DVPNELRRLAAAL 408
            G V D DE +++PR+R A+GP   +A+H      W+  G   D     A++ AA+ A      RH  +H GH    V+P D  ++DA    +AG  + GT  ++R RAEA +A GVT+L   P G DV  ++R  AAAL
Sbjct:  192 GTVLDDDESIETPRVREALGPWYVLAYHGT----WQTAGDAVDGLPGGAEWRAAIEAERPEGERHLAVHEGHATH-VMPRDRPLLDAAGDGLAGWGWVGTPEEVRARAEAAAASGVTDLLYTPAGPDVERDMRAFAAAL 325          
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A538HGX0_9ACTN (LLM class flavin-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGX0_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 3.650e-13
Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWR-LEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHAVVDAQTIAG-MSFTGTASQLRRRAEALSADGVTELAVQPGG-DVPNELRRLAAALLG 414
            G V    E   SPR  AAVGP +AV +HA  E+    ++ LP   + R +   A  +A      RH  +H+GHL+E    +   + DA  +A  ++ TG+A+++R R  AL+A GVTE+A QP G D+P EL   AAA  G
Sbjct:  193 GTVLGDGEAPTSPRAIAAVGPALAVGYHALYERGGSAVDRLPGGPRWRESVESARPSA------RHLEIHQGHLIEANRHDQLVIEDAAPLAPKLTMTGSAAEVRERLGALAAVGVTEIAYQPAGPDIPRELEAFAAAADG 327          
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A7K1Z702_9ACTN (LLM class flavin-dependent oxidoreductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z702_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 6.650e-12
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWRLEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHAVVDA--QTIAGMSFTGTASQLRRRAEALSADGVTELAVQPGG-DVPNELRRLAAALLG 414
            G V D  E ++ PR  AA+GP   VA+H      ++      D  A   D+ A + A      RH  +  GH+  LV   D  V++A  + IAGMS+ GTA ++R R +A +  GVTE+   P G D   E+R  A+A +G
Sbjct:  194 GTVLDQGEVINDPRPAAAIGPWHMVAYHGI----YQAAPEAVDTMAGGPDWRAGIEAERPEGERHLVVWEGHVTHLV-ERDAPVMEASGEAIAGMSWVGTADEIRARVDAAADAGVTEVMYTPAGPDAAREIRAFASAAIG 329          
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A0M8VD89_9ACTN (Methylene-tetrahydromethanopterin reductase n=1 Tax=Streptomyces sp. MMG1121 TaxID=1415544 RepID=A0A0M8VD89_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 1.830e-11
Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWRLEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHAVVDA--QTIAGMSFTGTASQLRRRAEALSADGVTELAVQPGG-DVPNELRR 393
            G V   DEPLDSPR+RAA GP  A+A+HA  E      G P  L    A ++ A+TA    ER H  +H  HL +L   +  A      Q I   + TGT   +R +    + DG+TE+  QP G D+P EL R
Sbjct:  193 GTVLGKDEPLDSPRVRAAAGPGNALAYHAAYE----FGGDPTSLPGGQA-WLDAITAHPRTER-HLAVHDQHLTDLNAADTTAWNAGAWQAITSTTVTGTPDHIRDQLITYAQDGITEIVYQPTGPDIPGELER 320          
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A250VW24_STROL (5,10-methylenetetrahydromethanopterin reductase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A250VW24_STROL)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-11
Identity = 53/134 (39.55%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWRLEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHA--VVDAQTIAGMSFTGTASQLRRRAEALSADGVTELAVQPGG-DVPNELRR 393
            G V   DEPL+SPR+RAA GP  A+A+HA  E      G P  L    A ++ AV+A    ER H  +H  HL+ L   +D A      Q I   + T T  ++R    A + DG+TE+  QP G D+P EL R
Sbjct:  193 GTVLGEDEPLNSPRIRAAAGPGNALAYHAAYE----FGGDPTALPGGRA-WLDAVSAHPRTER-HLAVHDQHLIGLNAADDAAWNAGSWQAITATTVTATPDRIRDTLSAYAQDGITEIVYQPTGPDIPGELER 320          
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A2D7FDX3_9HYPH (5,10-methylene tetrahydromethanopterin reductase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FDX3_9HYPH)

HSP 1 Score: 65.5 bits (158), Expect = 7.630e-10
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFH-AFAEQPWRLEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHAVVDAQTIAGMSFTGTASQLRRRAEALSADGVTELAVQPGG-DVPNELRRLA 399
            G V D  E + SPR++AA+ P++A+A+H  F   P  +  LP     + A+++ ++ +      RH  +H GH +++    DH +VD      M+FTG   +LR R E   ADG T   +   G D+  ELR  A
Sbjct:  191 GTVLDEGEDVHSPRVKAAIQPIMALAYHFKFTTDPDNIADLP-----KGAEWMRSLESVP-EHVRHLSVHTGHNLDVSNGHDH-LVDISAAKEMTFTGPPDELRARLEKYKADGATGFILGTSGVDIERELRAYA 318          
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Match: A0A6I3AWN1_9ACTN (LLM class flavin-dependent oxidoreductase n=5 Tax=root TaxID=1 RepID=A0A6I3AWN1_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-9
Identity = 48/134 (35.82%), Postives = 63/134 (47.01%), Query Frame = 1
Query:    1 GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWRLEGLPPDLQARAADYIAAVTAAYLAERRHQFLHRGHLVELVLPEDHA--VVDAQTIAGMSFTGTASQLRRRAEALSADGVTELAVQPGGDVPNELRRL 396
            G V D  E LD  R+R A GP  A+A+HA  E    L G    L         A   +     RH  +H GH + L   ++ A  V     +   + TGTA+++R RAE L+  GVTE+  QP G  PN  R L
Sbjct:  193 GTVLDQGESLDGERVRLAGGPGGAIAYHATYE----LAGADAVLTLPGGKEWLATVMSVPENERHLSVHVGHCIHLNKADEAAWAVTGGSLLPTTTLTGTAAEVRARAEQLAEQGVTEMVYQPAG--PNPRREL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54766.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7C4TJA4_9ACTN2.860e-1638.13LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A538HGX0_9ACTN3.650e-1339.01LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A7K1Z702_9ACTN6.650e-1235.46LLM class flavin-dependent oxidoreductase n=2 Tax=... [more]
A0A0M8VD89_9ACTN1.830e-1139.55Methylene-tetrahydromethanopterin reductase n=1 Ta... [more]
A0A250VW24_STROL2.420e-1139.555,10-methylenetetrahydromethanopterin reductase n=... [more]
A0A2D7FDX3_9HYPH7.630e-1033.335,10-methylene tetrahydromethanopterin reductase n... [more]
A0A6I3AWN1_9ACTN1.080e-935.82LLM class flavin-dependent oxidoreductase n=5 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54766contigP-wetherbeei_contig54766:39..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1283283.ATXA01000001_gene500
PFAMsBac_luciferase
Model size417
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-12
EggNOG OGsCOG2141@1|root,COG2141@2|Bacteria,2HTS0@201174|Actinobacteria,4ETZE@85013|Frankiales
DescriptionLuciferase-like monooxygenase
Cds size417
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.4852626-CDS-P-wetherbeei_contig54766:38..4551683186817.4852626-CDS-P-wetherbeei_contig54766:38..455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54766 39..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54766.1.1prot_P-wetherbeei_contig54766.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54766 39..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54766.1.1

>prot_P-wetherbeei_contig54766.1.1 ID=prot_P-wetherbeei_contig54766.1.1|Name=mRNA_P-wetherbeei_contig54766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
GAVADADEPLDSPRLRAAVGPVVAVAFHAFAEQPWRLEGLPPDLQARAAD
YIAAVTAAYLAERRHQFLHRGHLVELVLPEDHAVVDAQTIAGMSFTGTAS
QLRRRAEALSADGVTELAVQPGGDVPNELRRLAAALLG*
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mRNA from alignment at P-wetherbeei_contig54766:39..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54766.1.1 ID=mRNA_P-wetherbeei_contig54766.1.1|Name=mRNA_P-wetherbeei_contig54766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig54766:39..455+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGTGGCCGATGCCGATGAGCCGCTCGACAGCCCCCGGCTGCGGGC GGCCGTCGGCCCCGTGGTGGCCGTGGCATTCCACGCCTTCGCCGAGCAGC CCTGGCGCCTGGAGGGCCTGCCGCCCGACCTCCAGGCCCGGGCGGCCGAC TACATCGCGGCCGTCACCGCCGCCTACCTCGCCGAGCGCCGCCATCAGTT CCTGCACCGGGGGCACCTGGTGGAGCTGGTGCTGCCCGAGGATCACGCCG TGGTCGACGCCCAGACGATCGCGGGGATGTCCTTCACCGGCACGGCCTCG CAGTTGCGCCGGCGGGCCGAGGCCCTCTCGGCGGACGGCGTCACCGAGCT GGCCGTGCAGCCGGGCGGAGATGTCCCCAACGAGCTACGGCGCCTGGCGG CCGCCCTCCTCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54766:39..455+

>mRNA_P-wetherbeei_contig54766.1.1 ID=mRNA_P-wetherbeei_contig54766.1.1|Name=mRNA_P-wetherbeei_contig54766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig54766:39..455+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGTGGCCGATGCCGATGAGCCGCTCGACAGCCCCCGGCTGCGGGC
GGCCGTCGGCCCCGTGGTGGCCGTGGCATTCCACGCCTTCGCCGAGCAGC
CCTGGCGCCTGGAGGGCCTGCCGCCCGACCTCCAGGCCCGGGCGGCCGAC
TACATCGCGGCCGTCACCGCCGCCTACCTCGCCGAGCGCCGCCATCAGTT
CCTGCACCGGGGGCACCTGGTGGAGCTGGTGCTGCCCGAGGATCACGCCG
TGGTCGACGCCCAGACGATCGCGGGGATGTCCTTCACCGGCACGGCCTCG
CAGTTGCGCCGGCGGGCCGAGGCCCTCTCGGCGGACGGCGTCACCGAGCT
GGCCGTGCAGCCGGGCGGAGATGTCCCCAACGAGCTACGGCGCCTGGCGG
CCGCCCTCCTCGGCTGA
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