mRNA_P-wetherbeei_contig5475.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5475.1.1
Unique NamemRNA_P-wetherbeei_contig5475.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: D8LGA9_ECTSI (H(+)-transporting two-sector ATPase n=4 Tax=Phaeophyceae TaxID=2870 RepID=D8LGA9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.060e-18
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLEM 607
            +VTWAHIKTTM PLL KVVDGKFM+PKMPR QMD +Y A CDEIE+AFQSL ++
Sbjct:  567 KVTWAHIKTTMAPLLQKVVDGKFMEPKMPRAQMDAEYNATCDEIETAFQSLADL 620
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A835Z7J8_9STRA (H(+)-transporting two-sector ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.060e-18
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLEM 607
            ++TWAHIKTT+QPLLSKVVDGKF+DPKMPR +MDK Y  +C+EIE  FQSL+E+
Sbjct:  567 RITWAHIKTTLQPLLSKVVDGKFVDPKMPRAEMDKSYSKVCEEIEEGFQSLMEV 620
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A7S2V294_9STRA (H(+)-transporting two-sector ATPase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V294_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.130e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLEM 607
            ++TWAHIK TM  L+ KVV  KF+DPK   E+++K Y  LC+EIE+ FQ+L E+
Sbjct:  568 KITWAHIKATMNELIQKVVQAKFLDPKKTSEEINKTYDTLCEEIETNFQTLSEI 621
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A7S1C5E2_9STRA (H(+)-transporting two-sector ATPase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5E2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.670e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLE 604
            +VTWA IK T+ PLL +V + KF+DPKMP + M+ ++ +LCDEI SAF  L +
Sbjct:  576 RVTWATIKATLGPLLYRVTELKFLDPKMPADVMEGEFTSLCDEIASAFDGLAD 628
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A7S3JZ23_9STRA (H(+)-transporting two-sector ATPase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ23_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.990e-7
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLEM 607
            ++TWA IKT   PL+ KVVD KF+DPK+P EQ+ + Y  L ++I  +F  +L++
Sbjct:  569 KLTWAMIKTAQAPLIQKVVDTKFIDPKLPDEQIAQNYNELANDINESFNKMLDI 622
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A7S1H0R4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H0R4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.230e-7
Identity = 21/53 (39.62%), Postives = 41/53 (77.36%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLE 604
            ++T+AHIKT + P++ KVVD K+++PK  +E+++ +Y  +C+E++  FQ+L +
Sbjct:  112 KLTYAHIKTALGPIIQKVVDTKYVNPKAKQEEINAKYAVICEEMDKEFQALTD 164
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A7S2S754_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S754_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.170e-7
Identity = 21/51 (41.18%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSL 598
            ++T+AHIKT++ P++ KV+DGK++DPK     + ++Y  + DE++  FQ+L
Sbjct:   61 KLTYAHIKTSLAPIIQKVIDGKYVDPKSSTADITREYANIVDEMKREFQNL 111
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: F0Y5V6_AURAN (H(+)-transporting two-sector ATPase n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y5V6_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.000e-6
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLEM 607
            +VTWA IKT    ++ KVVD KF+DPK P +++   Y AL  EI+SAFQ++L++
Sbjct:  565 KVTWAMIKTAQAAIIQKVVDTKFVDPKDPDDKISAFYDALVAEIDSAFQTMLDV 618
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BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: W7UBF9_9STRA (H(+)-transporting two-sector ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBF9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.350e-6
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSL 598
            +VTWA+IKT + P++ KV++GKF +PK   E++   Y  +  E+E AFQ+L
Sbjct:  568 KVTWAYIKTALAPVIQKVIEGKFQEPKTAPEEIHAYYNDVAAEVEQAFQTL 618
[Close]
BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Match: A0A2D4BED6_PYTIN (H(+)-transporting two-sector ATPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BED6_PYTIN)

HSP 1 Score: 57.0 bits (136), Expect = 4.520e-6
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  446 QVTWAHIKTTMQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSL 598
            +VTWA IKTT+ P+L K++  KF  PK P +Q+   + +L +EIE +FQ L
Sbjct:  565 KVTWAQIKTTLNPVLQKIIQTKFQLPKQPEDQLKAFFSSLDEEIEQSFQQL 615
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LGA9_ECTSI4.060e-1875.93H(+)-transporting two-sector ATPase n=4 Tax=Phaeop... [more]
A0A835Z7J8_9STRA4.060e-1872.22H(+)-transporting two-sector ATPase n=1 Tax=Tribon... [more]
A0A7S2V294_9STRA5.130e-1053.70H(+)-transporting two-sector ATPase n=1 Tax=Fibroc... [more]
A0A7S1C5E2_9STRA2.670e-852.83H(+)-transporting two-sector ATPase n=1 Tax=Bicoso... [more]
A0A7S3JZ23_9STRA2.990e-746.30H(+)-transporting two-sector ATPase n=1 Tax=Aureou... [more]
A0A7S1H0R4_9STRA3.230e-739.62Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2S754_9STRA6.170e-741.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y5V6_AURAN1.000e-650.00H(+)-transporting two-sector ATPase n=2 Tax=Pelago... [more]
W7UBF9_9STRA3.350e-645.10H(+)-transporting two-sector ATPase n=2 Tax=Monodo... [more]
A0A2D4BED6_PYTIN4.520e-647.06H(+)-transporting two-sector ATPase n=1 Tax=Pythiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5475contigP-wetherbeei_contig5475:2841..3450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGA9
Preferred nameVHA-A
PFAMsATP-synt_ab,ATP-synt_ab_N,ATP-synt_ab_Xtn
Model size610
Max annot lvl2759|Eukaryota
KEGG koko:K02145
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000325,GO:0002020,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006996,GO:0007030,GO:0007275,GO:0008150,GO:0008324,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009628,GO:0009651,GO:0009941,GO:0009987,GO:0010256,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0019899,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030054,GO:0030312,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034220,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0046961,GO:0048046,GO:0048229,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0055044,GO:0055085,GO:0071840,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:0099131,GO:0099132,GO:1902600
Exons1
Evalue6.21e-14
EggNOG OGsCOG1155@1|root,KOG1352@2759|Eukaryota
EC3.6.3.14
Descriptionproton-transporting ATPase activity, rotational mechanism
Cds size135
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.4123924-CDS-P-wetherbeei_contig5475:2840..29751683186817.4123924-CDS-P-wetherbeei_contig5475:2840..2975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5475 2841..2975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.4253995-UTR-P-wetherbeei_contig5475:2975..34501683186817.4253995-UTR-P-wetherbeei_contig5475:2975..3450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5475 2976..3450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5475.1.1prot_P-wetherbeei_contig5475.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5475 2841..2975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5475.1.1

>prot_P-wetherbeei_contig5475.1.1 ID=prot_P-wetherbeei_contig5475.1.1|Name=mRNA_P-wetherbeei_contig5475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
MQPLLSKVVDGKFMDPKMPREQMDKQYGALCDEIESAFQSLLEM*
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mRNA from alignment at P-wetherbeei_contig5475:2841..3450-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5475.1.1 ID=mRNA_P-wetherbeei_contig5475.1.1|Name=mRNA_P-wetherbeei_contig5475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=610bp|location=Sequence derived from alignment at P-wetherbeei_contig5475:2841..3450- (Phaeothamnion wetherbeei SAG_119_79)
ACAAGTCGCTCGGCATGCTCAAGACCATCATCACCTTCTACAACTGTGCA
CAGAAGGCCATCTCCGACTCGCCCGCCGATGCCAAGGTTGGTAACGGGCG
AAAGCGCTTACAGAAGGGGTGGTTACACGCAGTAACTGAAGGGAATTTAC
AGAAGAGGCTGTTACGGCCAGTTGCAAGGTGGAGTTACACTGAGGGGGTA
CAGGAAGTTGCGAAGGGAGTGGAGAGTGGGGTAGCTGAAGGAAGGATTGG
CGCAGAGAGGATTCAATTTGGTGGTTGGCGAGAGTGGATTCCCTTGTCGC
CGGCATTGTAGTGGCCGCTTCGTGCATTGTCTGCGCATCTTCTGTGCTGC
TGCGTTTTGTCTGCTCGGTACCTTTCTCTGGTTTTCCCTGCCCTTCTGTA
ATCGGAAGCCGCTCGTGCTTCTGCATCTGCATCTGCCTTTGCCTGCAGGT
GACGTGGGCGCATATCAAGACGACGATGCAGCCGCTGCTGAGCAAAGTGG
TTGACGGCAAGTTCATGGACCCCAAGATGCCGCGTGAGCAGATGGATAAG
CAGTACGGCGCGCTGTGCGACGAGATCGAGTCCGCCTTCCAGTCCCTCCT
CGAGATGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5475:2841..3450-

>mRNA_P-wetherbeei_contig5475.1.1 ID=mRNA_P-wetherbeei_contig5475.1.1|Name=mRNA_P-wetherbeei_contig5475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig5475:2841..3450- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCGCTGCTGAGCAAAGTGGTTGACGGCAAGTTCATGGACCCCAA
GATGCCGCGTGAGCAGATGGATAAGCAGTACGGCGCGCTGTGCGACGAGA
TCGAGTCCGCCTTCCAGTCCCTCCTCGAGATGTGA
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