mRNA_P-wetherbeei_contig54711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54711.1.1
Unique NamemRNA_P-wetherbeei_contig54711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: A0A7X3SRL9_9HYPH (Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Microvirga makkahensis TaxID=1128670 RepID=A0A7X3SRL9_9HYPH)

HSP 1 Score: 58.9 bits (141), Expect = 3.920e-9
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   34 AAPALAQEMRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            A PA AQE+RP+ + G+AIPEPL    GDAARGRA++V R    C+LCH+ P
Sbjct:   43 AGPAHAQELRPFTIVGDAIPEPLTGIKGDAARGRAIVVDRRKGLCLLCHSGP 94          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: UPI001B110559 (Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Rhodospirillales bacterium TMPK1 TaxID=2812848 RepID=UPI001B110559)

HSP 1 Score: 56.2 bits (134), Expect = 2.190e-8
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   31 LAAPALAQEMRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            L + A AQE+RPY++ G+AIP+ L  A GDAARGRA++V R    C+LCH+ P
Sbjct:    6 LVSSANAQELRPYQIVGDAIPQSLTGAKGDAARGRAIVVNRQVGLCLLCHSGP 58          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: UPI001FE01E01 (sulfur oxidation c-type cytochrome SoxX n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001FE01E01)

HSP 1 Score: 54.3 bits (129), Expect = 1.480e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   37 APALAQEMRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            APA A+E+RPY V G+AIP+PL    GD  RGR ++V R  + CILCH+ P
Sbjct:   19 APAGAEELRPYTVVGDAIPQPLTGTKGDVVRGRTLIVERS-STCILCHSGP 68          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: A0A0A3Y184_BRAJP (Cytochrome C n=13 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0A3Y184_BRAJP)

HSP 1 Score: 53.9 bits (128), Expect = 2.120e-7
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   25 LMLAAPALAQEMRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            L LA  A A E+ PYR+ G+ IPEPL    GD ARGRA++VAR    CILCH+ P
Sbjct:   16 LALACGARADELVPYRIIGDTIPEPLTGTPGDPARGRALVVART-TTCILCHSGP 69          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: UPI001EE1822B (sulfur oxidation c-type cytochrome SoxX n=1 Tax=Methylorubrum podarium TaxID=200476 RepID=UPI001EE1822B)

HSP 1 Score: 53.9 bits (128), Expect = 2.260e-7
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    7 RIICVVLMLAAPALAQE--MRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            R++ +VL LA  A   E  + PYR+ G+AIPEPL  A GDA RGRA++  R    C+LCHA P
Sbjct:    6 RLVPIVLALAVTAARAEESLVPYRIVGDAIPEPLTGAPGDAGRGRAIVADRSRGLCLLCHAGP 68          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: A0A431QZ11_9BRAD (Sulfur oxidation c-type cytochrome SoxX n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A431QZ11_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 2.420e-7
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   31 LAAPALAQEMRPYRVEGNAIPEPLA-PAGDAARGRAMLVARDPANCILCHAAP 186
            L A A+AQE++PY + G+ IPE L    GDAARGRA+++ R  + CILCH+ P
Sbjct:    6 LPAAAVAQELKPYTIVGDGIPESLTGQPGDAARGRALVLTRS-STCILCHSGP 57          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: UPI001B89D9B6 (sulfur oxidation c-type cytochrome SoxX n=2 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001B89D9B6)

HSP 1 Score: 53.5 bits (127), Expect = 4.970e-7
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   10 IICVVLMLAAPALAQEMRPYRVEGNAIPEPLAP-AGDAARGRAMLVARDPANCILCHAAP 186
            +I + L LA+ A AQE+ PY + G +IP+ L   AGDAARGRA+++AR    CILCH+ P
Sbjct:   47 VITIGLALASGARAQELVPYNIVGESIPDSLTGGAGDAARGRALVLART-TTCILCHSGP 105          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: UPI0017D495DE (Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=UPI0017D495DE)

HSP 1 Score: 52.8 bits (125), Expect = 5.890e-7
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   34 AAPALAQEMRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            A  A A+++ PY++ GN IP PL  + GDAARGRA+++AR    CILCH+ P
Sbjct:   19 ACGASAEDLSPYKIVGNGIPTPLTGSPGDAARGRALVLART-TTCILCHSGP 69          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: A0A176YE40_9BRAD (Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Bradyrhizobium centrolobii TaxID=1505087 RepID=A0A176YE40_9BRAD)

HSP 1 Score: 52.8 bits (125), Expect = 5.990e-7
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   34 AAPALAQEMRPYRVEGNAIPEPLAPA-GDAARGRAMLVARDPANCILCHAAP 186
            AA A A+E  PY++ G+ IPE L  A GDAARGRA+++AR    CILCH+ P
Sbjct:   20 AAGATAEEPAPYKIVGDGIPESLTGAPGDAARGRALVLARG-TTCILCHSGP 70          
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Match: A0A0R3M5I2_9BRAD (Sulfur oxidation c-type cytochrome SoxX n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3M5I2_9BRAD)

HSP 1 Score: 52.4 bits (124), Expect = 6.540e-7
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   28 MLAAPALAQ--EMRPYRVEGNAIPEPLA-PAGDAARGRAMLVARDPANCILCHAAP 186
            MLA P LA   E+R Y V+G+AIP+ L   AGDAARGRA++V R  + CILCH+ P
Sbjct:    1 MLALPGLAAATELRFYAVDGDAIPQSLTGAAGDAARGRALVVERS-STCILCHSGP 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X3SRL9_9HYPH3.920e-957.69Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Mi... [more]
UPI001B1105592.190e-854.72Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Rh... [more]
UPI001FE01E011.480e-754.90sulfur oxidation c-type cytochrome SoxX n=2 Tax=Br... [more]
A0A0A3Y184_BRAJP2.120e-756.36Cytochrome C n=13 Tax=Bradyrhizobiaceae TaxID=4129... [more]
UPI001EE1822B2.260e-750.79sulfur oxidation c-type cytochrome SoxX n=1 Tax=Me... [more]
A0A431QZ11_9BRAD2.420e-752.83Sulfur oxidation c-type cytochrome SoxX n=6 Tax=Pr... [more]
UPI001B89D9B64.970e-751.67sulfur oxidation c-type cytochrome SoxX n=2 Tax=Br... [more]
UPI0017D495DE5.890e-751.92Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Br... [more]
A0A176YE40_9BRAD5.990e-755.77Sulfur oxidation c-type cytochrome SoxX n=1 Tax=Br... [more]
A0A0R3M5I2_9BRAD6.540e-757.14Sulfur oxidation c-type cytochrome SoxX n=2 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54711contigP-wetherbeei_contig54711:312..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog172088.AUGA01000002_gene5966
PFAMsCytochrom_C
Model size192
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC03151,RC03152
KEGG koko:K17223
KEGG ReactionR10151
KEGG Pathwayko00920,ko01100,ko01120,map00920,map01100,map01120
KEGG ModuleM00595
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.98e-09
EggNOG OGsCOG2010@1|root,COG2010@2|Bacteria,1RIV2@1224|Proteobacteria,2U9C5@28211|Alphaproteobacteria,3JZ5J@41294|Bradyrhizobiaceae
DescriptionCytochrome c
Cds size192
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.9418774-CDS-P-wetherbeei_contig54711:311..5031683186816.9418774-CDS-P-wetherbeei_contig54711:311..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54711 312..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54711.1.1prot_P-wetherbeei_contig54711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54711 312..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54711.1.1

>prot_P-wetherbeei_contig54711.1.1 ID=prot_P-wetherbeei_contig54711.1.1|Name=mRNA_P-wetherbeei_contig54711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MLRIICVVLMLAAPALAQEMRPYRVEGNAIPEPLAPAGDAARGRAMLVAR
DPANCILCHAAPPD
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mRNA from alignment at P-wetherbeei_contig54711:312..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54711.1.1 ID=mRNA_P-wetherbeei_contig54711.1.1|Name=mRNA_P-wetherbeei_contig54711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig54711:312..503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGAATTATTTGCGTCGTCCTGATGTTGGCGGCTCCCGCATTGGC ACAGGAGATGCGCCCTTATCGTGTTGAAGGCAATGCGATTCCCGAGCCGC TTGCGCCTGCCGGAGATGCCGCGCGCGGACGCGCCATGCTGGTGGCGCGC GACCCGGCCAACTGCATACTCTGCCACGCCGCCCCGCCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54711:312..503+

>mRNA_P-wetherbeei_contig54711.1.1 ID=mRNA_P-wetherbeei_contig54711.1.1|Name=mRNA_P-wetherbeei_contig54711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig54711:312..503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGAATTATTTGCGTCGTCCTGATGTTGGCGGCTCCCGCATTGGC
ACAGGAGATGCGCCCTTATCGTGTTGAAGGCAATGCGATTCCCGAGCCGC
TTGCGCCTGCCGGAGATGCCGCGCGCGGACGCGCCATGCTGGTGGCGCGC
GACCCGGCCAACTGCATACTCTGCCACGCCGCCCCGCCGGAT
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