mRNA_P-wetherbeei_contig5470.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5470.2.2
Unique NamemRNA_P-wetherbeei_contig5470.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 7.220e-120
Identity = 173/209 (82.78%), Postives = 192/209 (91.87%), Query Frame = 1 
Query:    1 REAEPYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNMHQTAPSSGXXXXXMCCG 627
            R+AEPYDHLFK+LL+GDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKM+D G KR+KMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRP+TF+NLSKWLEEVETYHPGRGREVVKLLVGNK+D+ERVV RA+AE +ARSKGMLFLEASAK+KVG+KQVF EVVQKIL+NP+LLANTAPGRPR TV+   + P+       +CCG
Sbjct:    4 RQAEPYDHLFKLLLVGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVD--PSRPNPNQAGGGLCCG 210
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A835YPZ0_9STRA (Rab18, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ0_9STRA)

HSP 1 Score: 325 bits (832), Expect = 4.170e-109
Identity = 162/198 (81.82%), Postives = 181/198 (91.41%), Query Frame = 1 
Query:   13 PYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNMH--QTAPSSG 600
            PYDHLFKILLIGDAAVGKSSIMLRFTDD+FDD LQSTIGVDFKVKMM++G+K++KMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDV RP+TF+NL+KWLEEVETYHPGRGR+VVKLLVGNK+D  R VPR +AEAWARSKGMLFLEASAK++VGI+Q F EVV KILE+PALLANT PG+PR TV++   Q  P SG
Sbjct:    6 PYDHLFKILLIGDAAVGKSSIMLRFTDDSFDDKLQSTIGVDFKVKMMEVGDKKIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVERPETFDNLNKWLEEVETYHPGRGRDVVKLLVGNKVDCPRAVPREQAEAWARSKGMLFLEASAKTEVGIRQAFEEVVHKILESPALLANTTPGKPR-TVDLAATQNTPPSG 202
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A4D9D7L4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L4_9STRA)

HSP 1 Score: 313 bits (802), Expect = 1.450e-104
Identity = 154/208 (74.04%), Postives = 177/208 (85.10%), Query Frame = 1 
Query:    1 REAEPYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNMHQTAPSSGXXXXXMCC 624
            RE EPYDHLFK+LLIGDA VGKSSI+LRFTDD FDDH QSTIGVDFKVKM+++ +KR+KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R ++FENL+ WL+EVE Y  G GRE+VK+LVGNK+D+ER+VPR EAEAWARSKGMLFLEASAK++ GI+QVF EVVQKIL+NP+LL NTAPGRPR  +     A  SG      CC
Sbjct:    4 REPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGSGGY----CC 207
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: W7UBM5_9STRA (Rab family gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBM5_9STRA)

HSP 1 Score: 312 bits (800), Expect = 7.890e-102
Identity = 153/200 (76.50%), Postives = 177/200 (88.50%), Query Frame = 1 
Query:    1 REAEPYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNMHQTAPSSG 600
            RE EPYDHLFK+LLIGDA VGKSSI+LRFTDD FDDH QSTIGVDFKVKM+++ +KR+KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R ++FENL+ WL+EVE Y  G GRE+VK+LVGNK+D+ER+VPR EAEAWARSKGMLFLEASAK++ GI+QVF EVVQKIL+NP+LL NTAPGRPR  VN+   A + G
Sbjct:   60 REPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR--VNLQADAAAKG 257
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC)

HSP 1 Score: 304 bits (778), Expect = 7.350e-101
Identity = 148/192 (77.08%), Postives = 169/192 (88.02%), Query Frame = 1 
Query:    1 REAEPYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNM 576
            +E + YDHLFK+LL+GDA VGKSS++LRFTDDTFDDHLQSTIGVDFKVKMM +  KR+KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TFENL  WL+EVE Y P  GR+VVKLLVGNKID+ERVV R E EAWARSKGMLF+E+SAK+K+GI+QVF+EVVQKIL+NPALLANTAP      VN+
Sbjct:    4 QEVDSYDHLFKLLLVGDAGVGKSSMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNL 195
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT)

HSP 1 Score: 296 bits (759), Expect = 4.120e-98
Identity = 148/183 (80.87%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:   16 YDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRG 564
            YDHLFK+LLIGDA VGKSS++LRFTDDTFDD+LQSTIGVDFKVKMM +  K++KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTFENL  WL+EVE Y P  GR+VVKLLVGNKID+ERVV R EAE WARSKGMLF+E+SAK+K+GI+QVF+EVVQKILENPALL+NTAP R RG
Sbjct:    4 YDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RSRG 185
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A7S2UMV5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMV5_9STRA)

HSP 1 Score: 295 bits (756), Expect = 2.110e-97
Identity = 144/206 (69.90%), Postives = 169/206 (82.04%), Query Frame = 1 
Query:   13 PYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNMHQTAPS--SGXXXXXMCC 624
            PYDHLFKIL+IGDA VGKSS++LRFTDD+FDDH+QSTIGVDFKVK MD+  KR+K+T+WDTAGQERFRTLTSSYYRGAQG+++VYDVTR D+FENL +WL+EV+ Y P  G  V+KLLVGNKID ER VPR EAEAWARS+GMLFLEASAK+K GI+Q F EVVQKI+E+P LL NTAPGRP+  +   +  P   S       CC
Sbjct:   14 PYDHLFKILMIGDAGVGKSSMLLRFTDDSFDDHIQSTIGVDFKVKHMDVAGKRIKLTVWDTAGQERFRTLTSSYYRGAQGVVMVYDVTRRDSFENLDQWLKEVKLYSPNNGEGVIKLLVGNKIDLERKVPREEAEAWARSQGMLFLEASAKTKKGIRQCFMEVVQKIIEDPDLLLNTAPGRPKMNLKREKRGPGGPSSISDDGGCC 219
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A6A3N672_9STRA (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N672_9STRA)

HSP 1 Score: 296 bits (758), Expect = 2.300e-97
Identity = 148/183 (80.87%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:   16 YDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRG 564
            YDHLFK+LLIGDA VGKSS++LRFTDDTFDD+LQSTIGVDFKVKMM +  K++KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTFENL  WL+EVE Y P  GR+VVKLLVGNKID+ERVV R EAE WARSKGMLF+E+SAK+K+GI+QVF+EVVQKILENPALL+NTAP R RG
Sbjct:   44 YDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RNRG 225
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A6G0KMK3_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0KMK3_9STRA)

HSP 1 Score: 296 bits (758), Expect = 4.100e-97
Identity = 148/183 (80.87%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:   16 YDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRG 564
            YDHLFK+LLIGDA VGKSS++LRFTDDTFDD+LQSTIGVDFKVKMM +  K++KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTFENL  WL+EVE Y P  GR+VVKLLVGNKID+ERVV R EAE WARSKGMLF+E+SAK+K+GI+QVF+EVVQKILENPALL+NTAP R RG
Sbjct:   61 YDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RNRG 242
[Close]
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Match: A0A6U2LXQ5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2LXQ5_9STRA)

HSP 1 Score: 294 bits (753), Expect = 6.020e-97
Identity = 141/198 (71.21%), Postives = 170/198 (85.86%), Query Frame = 1 
Query:    7 AEPYDHLFKILLIGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGNKIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENPALLANTAPGRPRGTVNMHQTAPSSG 600
            A PYDHLFK+LLIGDA VGKSS++LRFTDD+FDDH+QSTIGVDFKVK M++ +KR+KMT+WDTAGQERFRTLTSSYYRGAQG+++VYDVTR D+FENL++WL EV+ Y P  G  VVKLLVGNKID +R VPR EAEAWAR+ GMLFLEASAK+K+GI+Q F EVVQKI+++P LL NTAPGRP+  +   ++  S G
Sbjct:    4 ALPYDHLFKLLLIGDAGVGKSSMLLRFTDDSFDDHIQSTIGVDFKVKHMEVDDKRIKMTVWDTAGQERFRTLTSSYYRGAQGVVMVYDVTRRDSFENLAQWLREVQLYTPNNGEGVVKLLVGNKIDLDRRVPREEAEAWARANGMLFLEASAKTKLGIRQCFMEVVQKIMDDPDLLTNTAPGRPKMVLKQRESRGSGG 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5470.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G245_ECTSI7.220e-12082.78Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YPZ0_9STRA4.170e-10981.82Rab18, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A4D9D7L4_9STRA1.450e-10474.04Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
W7UBM5_9STRA7.890e-10276.50Rab family gtpase n=1 Tax=Nannochloropsis gaditana... [more]
A0A067C8B0_SAPPC7.350e-10177.08Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
D0NMU9_PHYIT4.120e-9880.87Rab18 family GTPase, putative n=6 Tax=Oomycota Tax... [more]
A0A7S2UMV5_9STRA2.110e-9769.90Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6A3N672_9STRA2.300e-9780.87Uncharacterized protein n=21 Tax=Peronosporaceae T... [more]
A0A6G0KMK3_9STRA4.100e-9780.87Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A6U2LXQ5_9STRA6.020e-9771.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5470contigP-wetherbeei_contig5470:592..3051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G245
Preferred nameRAB18
PFAMsRas
Model size962
Max annot lvl2759|Eukaryota
KEGG koko:K07910,ko:K07976,ko:K17506
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001654,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006913,GO:0006955,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008092,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0023052,GO:0030141,GO:0030659,GO:0030667,GO:0030742,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0034389,GO:0035556,GO:0036094,GO:0036230,GO:0042119,GO:0042175,GO:0042579,GO:0043009,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060322,GO:0065007,GO:0071782,GO:0071786,GO:0071840,GO:0071944,GO:0080115,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:1901265,GO:1901363
Exons5
Evalue5.91e-105
EggNOG OGsKOG0080@1|root,KOG0080@2759|Eukaryota
Ec32 ortholog descriptionRab18, RAB family GTPase
Ec32 orthologEc-09_003840.1
EC3.1.3.16
Descriptionmyosin XI tail binding
Cds size555
COG categoryS
BRITEko00000,ko01000,ko01009,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5470.2.2prot_P-wetherbeei_contig5470.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5470 667..2719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.7073965-UTR-P-wetherbeei_contig5470:591..6661683186816.7073965-UTR-P-wetherbeei_contig5470:591..666Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5470 592..666 +
1683186816.770711-UTR-P-wetherbeei_contig5470:2719..30511683186816.770711-UTR-P-wetherbeei_contig5470:2719..3051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5470 2720..3051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.727148-CDS-P-wetherbeei_contig5470:666..7181683186816.727148-CDS-P-wetherbeei_contig5470:666..718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5470 667..718 +
1683186816.7351153-CDS-P-wetherbeei_contig5470:965..10871683186816.7351153-CDS-P-wetherbeei_contig5470:965..1087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5470 966..1087 +
1683186816.7469769-CDS-P-wetherbeei_contig5470:1724..18621683186816.7469769-CDS-P-wetherbeei_contig5470:1724..1862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5470 1725..1862 +
1683186816.75509-CDS-P-wetherbeei_contig5470:2173..22571683186816.75509-CDS-P-wetherbeei_contig5470:2173..2257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5470 2174..2257 +
1683186816.7628884-CDS-P-wetherbeei_contig5470:2560..27191683186816.7628884-CDS-P-wetherbeei_contig5470:2560..2719Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5470 2561..2719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5470.2.2

>prot_P-wetherbeei_contig5470.2.2 ID=prot_P-wetherbeei_contig5470.2.2|Name=mRNA_P-wetherbeei_contig5470.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
MLRFTDDTFDDHLQSTIGVDFKVKMMDIGNKRVKMTIWDTAGQERFRTLT
SSYYRGAQGIMLVYDVTRPDTFENLSKWLEEVETYHPGRGREVVKLLVGN
KIDQERVVPRAEAEAWARSKGMLFLEASAKSKVGIKQVFSEVVQKILENP
ALLANTAPGRPRGTVNMHQTAPSSGGGGGGMCCG*
back to top

mRNA from alignment at P-wetherbeei_contig5470:592..3051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5470.2.2 ID=mRNA_P-wetherbeei_contig5470.2.2|Name=mRNA_P-wetherbeei_contig5470.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2460bp|location=Sequence derived from alignment at P-wetherbeei_contig5470:592..3051+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGAAGCGGAGCCGTACGACCATCTCTTCAAGATTTTACTCATCGGCGA
TGCCGCGGTGGGAAAAAGCTCGATCATGCTGCGCTTCACGGACGACACTT
TCGACGATCATCTTCAGTCTACCATCGGTGCGTTCATGGTTACCAGGAAT
TTTGTTCCTGGGGTTATGTTTGATGGCTTTGTCGCTTTGTCTGTCGGCGA
ACAACGAAGGCGAATGAGGGAAAGAATCCCTCTTCTGTACCCCTTGCGAG
AACGGGAGGTGGCGCGGAAGTAAATAGACTGCGCCTGGTGCTGCTGTATT
GTTAAGTCGTCGCCAGGAACCATCCTCTCCCCATTCTCGCTCACACCCGT
CTTCCTCCTTCTCGAGGCCGACAGGCGTTGACTTTAAGGTTAAAATGATG
GACATCGGCAACAAACGGGTTAAGATGACCATCTGGGACACGGCGGGGCA
AGAGCGCTTCCGAACGCTCACCAGCTCCTACTACCGCGGCGCGCAGGTGC
GTCATGTCTCTCAACCTCTCTTCTTCTCTTTATTTGACTCCCGAGGGAAG
AAATCGTACAGTGCTCTGCGAAAGGTTCCTGTTTTGTTTGAGGAACGCGT
CAATATCGCCCACATAATGTACCGAATCTTTTGAAGGGAGATGAAAGCCA
CAGCCCCCTCAAAGCCAAAGACACTGCTGCGGACCAACTGATGCGGCAAG
CCGGCCGCATCCTACGCGATGTCCCGTGTCTTCCTTTAATAGAAACCGAA
TATTTCTCTAAATCTGACCCGGTTTCTTTCGCGTCCTTCCTTTCGAATGG
CTGATTCAAATTGGCGAATGCGGCGGACGGCATCGTCTCATTGGCGACGC
TCTGGCATCGCGGATCTGCGCCGGTGGCAAAAACGGTTCTGTATTTTTAT
CGACTGCTCCAACCGCGAACCGCCAAATGACCCGTCCTGCTGAAACGTAT
CCATGAAATCCAATGAAACGCAACCCAACGCAATGCAACGCAAACCAATG
GACGCGACATGCAACGCACGAAATCGGAAAAACGAAACTCCTTCTGAAAC
GGTGGCCGACACGGTTTCTGAAACGGTAATGAAAACGGCTGCTGAAACGG
CATTCTGAAACGGTTTCTGAGCCGGACGGGCAGGGGATAATGCTGGTGTA
CGACGTGACGCGGCCAGACACCTTCGAGAACCTGTCCAAGTGGCTAGAGG
AAGTGGAGACGTACCACCCGGGCCGCGGCAGGGAGGTCGTCAAACTCCTC
GTCGGCAACAAGATCGACCAGGTCTGCTTTCGATTCGGGTCCGTGCATTC
ATTTGGTTCAAGTCCTCTTTTTGTTATAGTAGCATATTATCCCTGCTCTT
TCCCTTTTTTGCGTAGACAGTGCGTGAATGTGAACAAGTCGGCGGTACTA
CAATATCGCTCTACCGTCCGCTTCGCTTGGAGAGGAAGAAGGATGCGAAG
GCAATCGTTCGTGCTGTTCTCAAGTTGCCTGCCTCGCTCGCTGCCGTCAA
CTCACAACCTGCTCACCTGCTGCACGCTACCTGCCGCGTCGCTGCGACGT
CTTTACTCGGTCGAACCGATGATGTTGGACAGGAGCGGGTGGTGCCGCGA
GCTGAGGCGGAGGCGTGGGCGAGGAGCAAGGGGATGCTCTTCCTCGAGGC
CAGCGCTAAGTCCAAGGTGCATTTGTCAGAATTGAAGCCCTGTAATATAG
CTGATGTGGATTGGATGGCTGGTTCCAGATTGCATCTTCAGGGCTCCTGC
TGCAGTCCGTTATTATACTGTGCAGTTGCGTGTTGTCATGTTGTGCTTTT
GACCAGTGCAATGATGGCAGCTGGTATGTATGTCCGCGGTGTGCATGCAT
TCCCATGCCATTTTTGTGCAACGATTCCTTTGTCCCCACCCCGTCCTTTT
CCTGCTCGCCGCCTTCCTTCCTTTTTTGCATTCCTTCTCCTCCCGTTCCG
TCGCCTCATCTGCGTTCAGGTTGGCATCAAGCAGGTGTTCTCGGAAGTGG
TGCAGAAAATTCTCGAGAACCCGGCCCTCCTCGCCAACACGGCGCCGGGC
CGACCACGCGGCACCGTCAACATGCACCAGACGGCGCCGTCGAGCGGCGG
CGGTGGCGGTGGCATGTGCTGTGGATGACCTCTTTTATTACAGCCCTTGT
CGAATCGGATCCGGACGTCGGATCTGAGGGCAGGACCCCTCTGCTCTCTG
GTCGACGTCGTTCTCAGGCCCGCCTTCTCTGCTTGGAGGGTCGGCCGGGC
CGCTGTTCGCCTCGCTGCCGCCGGCAGCGTTGCGATGGTTTCGGCGGTCC
GCATGTTGTAACCGGTAGTCGGAGGTTCTGGTGGTGACATAGGGGATGTG
TCGGTGGGCCGCGGAATATGCTGGCCGGCCGTGGAGAGGAATGTCGTCAG
CCGATGGCCGGCTGCTTGGAGCGGTTCGGCAACAGCGGCGTCGGCAGGGA
CGAGAGCGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5470:592..3051+

>mRNA_P-wetherbeei_contig5470.2.2 ID=mRNA_P-wetherbeei_contig5470.2.2|Name=mRNA_P-wetherbeei_contig5470.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig5470:592..3051+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGCTTCACGGACGACACTTTCGACGATCATCTTCAGTCTACCAT
CGGCGTTGACTTTAAGGTTAAAATGATGGACATCGGCAACAAACGGGTTA
AGATGACCATCTGGGACACGGCGGGGCAAGAGCGCTTCCGAACGCTCACC
AGCTCCTACTACCGCGGCGCGCAGGGGATAATGCTGGTGTACGACGTGAC
GCGGCCAGACACCTTCGAGAACCTGTCCAAGTGGCTAGAGGAAGTGGAGA
CGTACCACCCGGGCCGCGGCAGGGAGGTCGTCAAACTCCTCGTCGGCAAC
AAGATCGACCAGGAGCGGGTGGTGCCGCGAGCTGAGGCGGAGGCGTGGGC
GAGGAGCAAGGGGATGCTCTTCCTCGAGGCCAGCGCTAAGTCCAAGGTTG
GCATCAAGCAGGTGTTCTCGGAAGTGGTGCAGAAAATTCTCGAGAACCCG
GCCCTCCTCGCCAACACGGCGCCGGGCCGACCACGCGGCACCGTCAACAT
GCACCAGACGGCGCCGTCGAGCGGCGGCGGTGGCGGTGGCATGTGCTGTG
GATGA
back to top