mRNA_P-wetherbeei_contig5470.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5470.1.1
Unique NamemRNA_P-wetherbeei_contig5470.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5470.1.1 vs. uniprot
Match: D7G244_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G244_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 5.380e-14
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 PCQVRLIGLRTQAMWLDHVTLKTNGFPPESFPPGGE---AIGKNTVRIKRLIYRSKQRGWLEV 180
            P +V  +G RTQ MW DHV L T  FP  S PPGG    ++  + VR KRL+YRSKQRGWLEV
Sbjct:   66 PEEVLRVGARTQEMWKDHVALTTE-FPDASLPPGGHEASSVSPDAVRRKRLVYRSKQRGWLEV 127
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BLAST of mRNA_P-wetherbeei_contig5470.1.1 vs. uniprot
Match: A0A835YN51_9STRA (Flavinator of succinate dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN51_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.690e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 QVRLIGLRTQAMWLDHVTLKTNGFPPESFPPGGEAIGKNTVRIKRLIYRSKQRGWLEV 180
            QVR +G R+Q  + +H+ LKT  FP  SFPP G  + ++ VR KRLIYRSKQRGWLEV
Sbjct:   62 QVRRVGERSQEEFFNHIVLKTK-FPEASFPPEG-GVSRDMVRRKRLIYRSKQRGWLEV 117
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BLAST of mRNA_P-wetherbeei_contig5470.1.1 vs. uniprot
Match: A0A4D9CR24_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR24_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.040e-9
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 PCQVRLIGLRTQAMWLDHVTLKTNGFPPESF-----PPGGEAIGKNTVRIKRLIYRSKQRGWLEV 180
            P QVR IG RT+A   DH+ LKT    PES      PPG   +  + +R KRL+YRSKQRGWLEV
Sbjct:   51 PAQVRRIGERTKAQLDDHLRLKTQ--VPESSLDPTAPPG--PVDTDLIRRKRLLYRSKQRGWLEV 111
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BLAST of mRNA_P-wetherbeei_contig5470.1.1 vs. uniprot
Match: A0A7S2R8F6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8F6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.760e-7
Identity = 28/56 (50.00%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   13 RLIGLRTQAMWLDHVTLKTNGFPPESFPPGGEAIGKNTVRIKRLIYRSKQRGWLEV 180
            R    R   M  +H  LKT+  P  S  PG   +  +T+R KRLIYRSKQRGWLEV
Sbjct:   19 RRAAARDHQMRSEHFALKTD-VPVSSLAPGETRVDGDTIRRKRLIYRSKQRGWLEV 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5470.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G244_ECTSI5.380e-1457.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YN51_9STRA2.690e-1258.62Flavinator of succinate dehydrogenase-domain-conta... [more]
A0A4D9CR24_9STRA6.040e-953.85Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2R8F6_9STRA2.760e-750.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5470contigP-wetherbeei_contig5470:48..227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G244
Preferred nameSDHAF2
PFAMsSdh5
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K18168,ko:K20352
KEGG TC9.B.188
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007049,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010717,GO:0010719,GO:0015980,GO:0016043,GO:0016310,GO:0016311,GO:0016999,GO:0017144,GO:0018065,GO:0018293,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023057,GO:0030111,GO:0030154,GO:0030178,GO:0030435,GO:0030437,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0033108,GO:0034293,GO:0034552,GO:0034553,GO:0034622,GO:0034641,GO:0036211,GO:0042592,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045333,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055086,GO:0055114,GO:0060255,GO:0060828,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0072521,GO:0080090,GO:0090090,GO:0098771,GO:1901135,GO:1901360,GO:1901564,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
Exons1
Evalue8.82e-15
EggNOG OGsCOG2938@1|root,KOG3326@2759|Eukaryota
Ec32 ortholog descriptionFlavinator of succinate dehydrogenase
Ec32 orthologEc-09_003830.1
Descriptionprotein-FAD linkage
Cds size180
COG categoryU
BRITEko00000,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.6791048-CDS-P-wetherbeei_contig5470:47..2271683186816.6791048-CDS-P-wetherbeei_contig5470:47..227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5470 48..227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5470.1.1prot_P-wetherbeei_contig5470.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5470 48..227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5470.1.1

>prot_P-wetherbeei_contig5470.1.1 ID=prot_P-wetherbeei_contig5470.1.1|Name=mRNA_P-wetherbeei_contig5470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
PCQVRLIGLRTQAMWLDHVTLKTNGFPPESFPPGGEAIGKNTVRIKRLIY
RSKQRGWLEV
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mRNA from alignment at P-wetherbeei_contig5470:48..227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5470.1.1 ID=mRNA_P-wetherbeei_contig5470.1.1|Name=mRNA_P-wetherbeei_contig5470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig5470:48..227- (Phaeothamnion wetherbeei SAG_119_79)
CCGTGTCAGGTCCGATTGATCGGGCTGCGGACTCAGGCGATGTGGCTCGA
CCACGTGACGCTGAAAACGAACGGCTTCCCACCGGAGAGCTTTCCGCCCG
GCGGCGAGGCCATTGGCAAGAACACCGTGCGCATAAAGCGGCTGATCTAC
AGGAGCAAGCAACGAGGGTGGCTTGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5470:48..227-

>mRNA_P-wetherbeei_contig5470.1.1 ID=mRNA_P-wetherbeei_contig5470.1.1|Name=mRNA_P-wetherbeei_contig5470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig5470:48..227- (Phaeothamnion wetherbeei SAG_119_79)
CCGTGTCAGGTCCGATTGATCGGGCTGCGGACTCAGGCGATGTGGCTCGA
CCACGTGACGCTGAAAACGAACGGCTTCCCACCGGAGAGCTTTCCGCCCG
GCGGCGAGGCCATTGGCAAGAACACCGTGCGCATAAAGCGGCTGATCTAC
AGGAGCAAGCAACGAGGGTGGCTTGAGGTG
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