mRNA_P-wetherbeei_contig54670.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54670.1.1
Unique NamemRNA_P-wetherbeei_contig54670.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A1F4C7F3_9PROT (Ribonuclease VapC n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b TaxID=1797496 RepID=A0A1F4C7F3_9PROT)

HSP 1 Score: 143 bits (361), Expect = 2.830e-41
Identity = 76/139 (54.68%), Postives = 92/139 (66.19%), Query Frame = 1
Query:    1 MAFSRIVLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVEL 417
            MA  RIVLDASV +EWFLP       YA  +L+ I A EL P VPDLWHYE+GSVLVAAKR +RISA +L A    L  L   T+   +  A+V+     +HLQGYD VYF+LA+RL V +A+ DGG+RTAC    VEL
Sbjct:    1 MAAERIVLDASVAVEWFLPGGGPGQQYAEGILERISAGELFPAVPDLWHYELGSVLVAAKRDKRISAAKLGASQATLRALEFETLAVELDAAEVVDLGLRYHLQGYDVVYFELARRLGVPLATLDGGMRTACGIFRVEL 139          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A1F2RH48_9BACT (Ribonuclease VapC n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 TaxID=1797180 RepID=A0A1F2RH48_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 1.060e-17
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   10 SRIVLDASVTIEWFLPDKPSASAYAGEV-LQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVELW 420
            + +VLDASV++ WFL + P  +AYA  V + A+E   L   VP  W  E+G VL+   R++ +   +L      L     +      T   V+  A  +HLQGYD +YFDLA+ L++ +A+ D G R A  A+GV ++
Sbjct:    3 TELVLDASVSLAWFLKETPERAAYAAAVNVAAVEGAIL--HVPVQWGVEMGHVLLREYRRKVLKRGKLREALEDLDNFDIYVHIELFTARRVVELARRYHLQGYDALYFDLARSLKLPLATLDHGHRQAAEAYGVTVF 138          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A1F3YFI9_9PROT (Ribonuclease VapC n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YFI9_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 2.480e-16
Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = 1
Query:   13 RIVLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRM---TEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVELW 420
             +VLDASV++ WFL + P  +AYA  V  A     +L  VP  W  E+G VL+  +R++ +   +L      L +L  F I   +   T   V+  A  +HLQGYD +YFDLA+ L + +A+ D G R A + H V ++
Sbjct:    4 ELVLDASVSLAWFLKETPERAAYAAAVSAAAADGAILH-VPVQWGIEMGHVLLREQRRKVLKRGKLQ---QALEDLDCFDIRVHLELFTPRRVVDLARRYHLQGYDALYFDLARTLGLPLATLDHGHRQAAKVHKVAVF 138          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: UPI001AE8632E (type II toxin-antitoxin system VapC family toxin n=1 Tax=unclassified Cupriavidus TaxID=2640874 RepID=UPI001AE8632E)

HSP 1 Score: 75.1 bits (183), Expect = 2.200e-14
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 1
Query:   10 SRIVLDASVTIEWFLP-DKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVELW 420
            + +V+DASV + WFLP D      Y+  V  AI    +   VP+++  E    L+   R  R   +++   A  +       +        ++ +A  FHLQGYD++YF +A+     IA+ D GI TACR  GVE W
Sbjct:    2 TTVVIDASVALGWFLPSDNEEMLRYSASVHDAIAVGTIRAAVPNIFFVECSHKLLRHGRSARWGEEKVAQCAAYIQATISEIVAEYYPMEAMVRRAHEFHLQGYDSLYFVVARVNDWQIATLDKGILTACRRFGVETW 139          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: Q7NK02_GLOVI (Gll1679 protein n=1 Tax=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) TaxID=251221 RepID=Q7NK02_GLOVI)

HSP 1 Score: 67.0 bits (162), Expect = 2.510e-11
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   10 SRIVLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEA--DVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVEL 417
            S  VLD S+ I W + D+  A+     +L+ +  R+   +VP LW++E+G+VL+ A+R+ R++A +++A  G +AEL   +   R   A  + +  A    L  YD  Y +LA R  + IA+ D  +R A    GV++
Sbjct:    2 SSFVLDCSIAICWCIEDE--ATPQTDALLERL--RDEGAIVPPLWYFELGNVLLQAERRGRLNAAQVSARLGLIAELPISSDEGRAARALHETLLLARGEKLTLYDAAYLELAMRRALPIATKDSALRAAALRVGVDV 135          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A7X4C3N2_9BACT (Ribonuclease VapC n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X4C3N2_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 2.510e-11
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   19 VLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTE---ADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVEL 417
            VLD SVT+ W  PD+  A+     +  A+   E    VP LW  EV +VL+ A R+ RI+      I   L  L P TI+P  T      V+  A A  L  YD++Y +LA R+R+ +A+ D  +  A R  G+E+
Sbjct:    4 VLDCSVTMAWVFPDE--ATEETARLRDALT--EGRAFVPSLWPIEVANVLLVATRRGRIAESDWPRIWRNLEAL-PLTIDPVSTSRIRGPVLGVAHAHGLSVYDSMYLELAIRMRLPLATLDRALGEAARTAGLEV 134          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A6L8EK67_9GAMM (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EK67_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 3.310e-11
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   19 VLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVEL 417
            VLDASVT+ WFL D+ +  A   + +++   R+    VP LWH EV + L+ A+R+ R+SA R++     L  L P   +       V + A    L  YD VY +LAKR    +AS D  +  A    GV +
Sbjct:    5 VLDASVTLAWFLDDEQAPQA---DNVRSRLVRDSA-FVPQLWHLEVRNGLIIAERRGRLSATRMSECLKALKWL-PIQTDSEAVLEIVTSLARLHKLSVYDAVYLELAKRRDAVLASLDAALLRAAAEEGVRV 132          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A7X3Y9P5_9PROT (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X3Y9P5_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 4.970e-11
Identity = 49/135 (36.30%), Postives = 65/135 (48.15%), Query Frame = 1
Query:   19 VLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEA---DVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVE 414
            VLD SV + W  PD+ S    A + L+     +    VP LW  EVGSVL+AA R+RRI       I   L  L P  I    T       +A A    L  YD  Y +LA R+R+ +A+ D  +  A RA G++
Sbjct:    4 VLDCSVAMAWVFPDESSP---ATDRLRDSLVNDRA-FVPSLWPVEVGSVLLAATRRRRIGVGEWPVICASLDAL-PIEIEQVSTSCVWGPALALADRHDLSVYDAAYLELALRMRLPLATLDRALAAAARAAGLD 133          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: UPI0019B500ED (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019B500ED)

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-10
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   19 VLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVEL 417
            VLD SV   WFL ++  ++ Y+  +L+ ++       VP  W  E  +VL  A  ++R++A+    +  Q+  L       ++  ++++  A  F L  YD  Y +LA RL++ +A+TDG +R A  A GV +
Sbjct:    4 VLDNSVCCGWFLANQ--STPYSESILERLQDDRAA--VPAFWELEFTNVLRTACLRQRMTAEAAQRVISQIVSLPIDVDRNKVPASEILGLALRFGLSSYDAAYLELALRLQLPLATTDGPLRAAALASGVGI 132          
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Match: A0A1F3ZZR7_9PROT (PINc domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZZR7_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 8.560e-10
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   19 VLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHYEVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGAFHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRA 402
            V+D SV + W++ D+  AS +   +   +   E    VP LW  E+ S LV A+R++R++A R  A+    A L     +  +T  +    A A  L  YD VYF+LA+R ++ +A+ D  +  A RA
Sbjct:    6 VIDCSVCLPWYIDDE--ASDFCARLAAMLGRAE--NWVPSLWRPELVSALVNAERRKRMTADRRRAVLENAAGLPLRVDHDTLTVIETGDLASAHDLTPYDAVYFELARRRKLPLATLDATLVKAARA 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54670.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A1F4C7F3_9PROT2.830e-4154.68Ribonuclease VapC n=1 Tax=Betaproteobacteria bacte... [more]
A0A1F2RH48_9BACT1.060e-1736.23Ribonuclease VapC n=1 Tax=Acidobacteria bacterium ... [more]
A0A1F3YFI9_9PROT2.480e-1636.69Ribonuclease VapC n=1 Tax=Betaproteobacteria bacte... [more]
UPI001AE8632E2.200e-1432.61type II toxin-antitoxin system VapC family toxin n... [more]
Q7NK02_GLOVI2.510e-1132.61Gll1679 protein n=1 Tax=Gloeobacter violaceus (str... [more]
A0A7X4C3N2_9BACT2.510e-1136.03Ribonuclease VapC n=1 Tax=Gemmatimonadales bacteri... [more]
A0A6L8EK67_9GAMM3.310e-1135.34Type II toxin-antitoxin system VapC family toxin n... [more]
A0A7X3Y9P5_9PROT4.970e-1136.30Type II toxin-antitoxin system VapC family toxin n... [more]
UPI0019B500ED1.900e-1030.08Type II toxin-antitoxin system VapC family toxin n... [more]
A0A1F3ZZR7_9PROT8.560e-1032.81PINc domain-containing protein n=1 Tax=Betaproteob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54670contigP-wetherbeei_contig54670:71..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1381123.AYOD01000064_gene1526
PFAMsPIN
Model size447
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.44e-16
EggNOG OGsCOG4113@1|root,COG4113@2|Bacteria,1N96B@1224|Proteobacteria,2UCVY@28211|Alphaproteobacteria,43M4H@69277|Phyllobacteriaceae
DescriptionPIN domain
Cds size447
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.4389641-CDS-P-wetherbeei_contig54670:70..5171683186816.4389641-CDS-P-wetherbeei_contig54670:70..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54670 71..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54670.1.1prot_P-wetherbeei_contig54670.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54670 71..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54670.1.1

>prot_P-wetherbeei_contig54670.1.1 ID=prot_P-wetherbeei_contig54670.1.1|Name=mRNA_P-wetherbeei_contig54670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MAFSRIVLDASVTIEWFLPDKPSASAYAGEVLQAIEARELLPMVPDLWHY
EVGSVLVAAKRQRRISAKRLTAIAGQLAELRPFTINPRMTEADVIAKAGA
FHLQGYDTVYFDLAKRLRVSIASTDGGIRTACRAHGVELWQAKVHRRT*
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mRNA from alignment at P-wetherbeei_contig54670:71..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54670.1.1 ID=mRNA_P-wetherbeei_contig54670.1.1|Name=mRNA_P-wetherbeei_contig54670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig54670:71..517+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTTAGCCGCATCGTCCTCGATGCGAGCGTGACCATAGAGTGGTT TCTGCCCGACAAACCTAGCGCCAGCGCCTATGCGGGTGAAGTGCTCCAGG CGATTGAGGCCCGCGAACTACTTCCGATGGTTCCCGACCTTTGGCATTAC GAAGTAGGCAGTGTGTTGGTGGCCGCGAAACGGCAGCGCCGCATCAGTGC CAAGCGACTAACGGCAATTGCTGGTCAACTCGCTGAACTGCGCCCGTTCA CAATCAACCCACGCATGACCGAGGCCGACGTCATCGCCAAGGCCGGTGCG TTCCACCTGCAGGGATACGACACGGTCTATTTCGACCTGGCCAAGCGGCT ACGCGTGTCGATCGCGTCTACGGATGGCGGGATTCGCACAGCCTGCCGAG CGCATGGCGTCGAACTCTGGCAGGCGAAGGTTCACAGGCGCACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54670:71..517+

>mRNA_P-wetherbeei_contig54670.1.1 ID=mRNA_P-wetherbeei_contig54670.1.1|Name=mRNA_P-wetherbeei_contig54670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig54670:71..517+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTTAGCCGCATCGTCCTCGATGCGAGCGTGACCATAGAGTGGTT
TCTGCCCGACAAACCTAGCGCCAGCGCCTATGCGGGTGAAGTGCTCCAGG
CGATTGAGGCCCGCGAACTACTTCCGATGGTTCCCGACCTTTGGCATTAC
GAAGTAGGCAGTGTGTTGGTGGCCGCGAAACGGCAGCGCCGCATCAGTGC
CAAGCGACTAACGGCAATTGCTGGTCAACTCGCTGAACTGCGCCCGTTCA
CAATCAACCCACGCATGACCGAGGCCGACGTCATCGCCAAGGCCGGTGCG
TTCCACCTGCAGGGATACGACACGGTCTATTTCGACCTGGCCAAGCGGCT
ACGCGTGTCGATCGCGTCTACGGATGGCGGGATTCGCACAGCCTGCCGAG
CGCATGGCGTCGAACTCTGGCAGGCGAAGGTTCACAGGCGCACCTGA
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