mRNA_P-wetherbeei_contig54658.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54658.1.1
Unique NamemRNA_P-wetherbeei_contig54658.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7W0KDU9_9CHLR (SBP_bac_5 domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KDU9_9CHLR)

HSP 1 Score: 277 bits (708), Expect = 6.750e-89
Identity = 135/173 (78.03%), Postives = 155/173 (89.60%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLPQVANYSGGY++ Q +YEALGAD F +AP GTGPF F +YT QN+V L A+  +FRGAP+LGGVEVRFVADGTSRELALQSGDLDVI GLPEAQWV+RMN ++GLQ DVFGVGEVVFLNLDV HEIL+DP VREAILLA++RE+T+ALSG+PVS PV+SVVPA+FMPGGL
Sbjct:  175 LFLPQVANYSGGYVLCQQSYEALGADAFATAPAGTGPFVFESYTTQNNVTLTANQDYFRGAPQLGGVEVRFVADGTSRELALQSGDLDVIAGLPEAQWVERMNEVEGLQADVFGVGEVVFLNLDVEHEILQDPLVREAILLAIDRENTVALSGSPVSEPVYSVVPAEFMPGGL 347          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7W0PQP1_9CHLR (SBP_bac_5 domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PQP1_9CHLR)

HSP 1 Score: 275 bits (704), Expect = 9.720e-88
Identity = 132/173 (76.30%), Postives = 156/173 (90.17%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLPQVANYSGGY++ Q +YEA+GA+ F ++P G+GPF F +YT QNSV+L ++D +FRGAP+LGGVEVRFVADGTSRELALQSGDLDV+ GLPEA WVDRMN ++GLQ DVFGVGEVVFLNLDV HEIL+DP VREAILLA+NRE+T+ALSG+PVS PV+SVVPA+FMPGGL
Sbjct:  175 LFLPQVANYSGGYVLCQQSYEAIGAEAFITSPAGSGPFMFESYTTQNSVVLTSNDDYFRGAPQLGGVEVRFVADGTSRELALQSGDLDVVAGLPEANWVDRMNEVEGLQADVFGVGEVVFLNLDVEHEILQDPLVREAILLAINRENTVALSGSPVSEPVYSVVPAEFMPGGL 347          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7W0KE01_9CHLR (SBP_bac_5 domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KE01_9CHLR)

HSP 1 Score: 274 bits (701), Expect = 2.740e-87
Identity = 132/173 (76.30%), Postives = 156/173 (90.17%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            +F+P VANY+GGY++ Q +YEALGAD F +AP GTGPF F +YT Q+SV+L A+D F+RGAP+LGGVEVRFVADGTSRELALQSGDLDVI GLPEAQWVDRMN +DG+Q DVFGVGEV+FLNLDV HEIL+DP VREAILLA++RE+T+ALSG+PVS PV+SVVPA+FMPGGL
Sbjct:  175 VFVPLVANYAGGYVLCQQSYEALGADAFITAPAGTGPFMFESYTTQDSVVLTANDDFYRGAPQLGGVEVRFVADGTSRELALQSGDLDVIAGLPEAQWVDRMNEVDGIQADVFGVGEVIFLNLDVEHEILQDPLVREAILLAIDRENTVALSGSPVSEPVYSVVPAEFMPGGL 347          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7V9VWK1_9CHLR (SBP_bac_5 domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VWK1_9CHLR)

HSP 1 Score: 269 bits (688), Expect = 2.430e-85
Identity = 132/173 (76.30%), Postives = 152/173 (87.86%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLPQVANYSGGY++ + +Y ALGAD F ++P GTGPF F +YTPQ +V+L A+D F+RGAP+LGGVEV FVADGTSRE ALQS DLDVI G+PEAQWVDRM+ ++GLQVDVFGVGEVVFLNLDV HEILKDP VREAILLA+NREDT+ALSG+PVS PV+SVVP  FMPGGL
Sbjct:  175 LFLPQVANYSGGYVLCEESYNALGADQFITSPAGTGPFTFESYTPQVAVVLTANDDFYRGAPQLGGVEVTFVADGTSREQALQSDDLDVIAGVPEAQWVDRMSEVEGLQVDVFGVGEVVFLNLDVEHEILKDPLVREAILLAINREDTIALSGSPVSEPVYSVVPEAFMPGGL 347          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7V8VWB1_9CHLR (SBP_bac_5 domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VWB1_9CHLR)

HSP 1 Score: 268 bits (684), Expect = 9.920e-85
Identity = 128/173 (73.99%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLP +ANY+GGY+I Q  +EALG DGF + P GTGPFAF +YTPQ++V L A+D F+RGAPKLGGV+VRFVAD T+RELA+QSGDLDVI G PEA WVDRMN    +Q DVFGVGE VFLNL+VNHEILKDPKVREAILLA+NREDT+ALSG+PVS P++S+VPADF+PGGL
Sbjct:  177 LFLPSMANYAGGYVICQQPFEALGVDGFQANPTGTGPFAFESYTPQSNVSLVANDEFYRGAPKLGGVDVRFVADSTARELAIQSGDLDVIAGFPEAAWVDRMNEGGEIQADVFGVGEAVFLNLNVNHEILKDPKVREAILLAINREDTVALSGSPVSEPIYSIVPADFVPGGL 349          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7V9VJ58_9CHLR (Polyamine ABC transporter substrate-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VJ58_9CHLR)

HSP 1 Score: 233 bits (594), Expect = 2.560e-71
Identity = 116/173 (67.05%), Postives = 138/173 (79.77%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLP +ANYSGG+II Q  +EALGADGF + PVGTGPF F  YTPQNSV+LAA+D +FRGAP L GVEVRF+ADGT+RELALQSG+L V  GLPEAQW DR++  +G+ VDVFGVGEV+FLN++   E   DP VREAI+LA++RE  +ALSGAPV   V+S VPA  M GGL
Sbjct:  173 LFLPTIANYSGGFIICQQPFEALGADGFITNPVGTGPFMFQEYTPQNSVVLAANDDYFRGAPALSGVEVRFIADGTTRELALQSGELHVAAGLPEAQWADRVSEQEGVVVDVFGVGEVLFLNINTTIEPFDDPLVREAIMLAISREGHIALSGAPVGEAVYSPVPAQLMEGGL 345          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7V8X4P4_9CHLR (SBP_bac_5 domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8X4P4_9CHLR)

HSP 1 Score: 221 bits (564), Expect = 7.220e-67
Identity = 109/173 (63.01%), Postives = 136/173 (78.61%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLP +ANYSGG++I Q  ++ALGADGF + PVGTGPF F +YTPQNSV L A+D +FRGAP L GVEVRF+AD T+RELALQSG+L V  GLPEAQ+ DR+N  +GL  DVFGVGEV++LN+++  E   DP VREA++LA++R+  +ALSGAPV   V+S VPA  M GGL
Sbjct:  173 LFLPNIANYSGGFVICQQPFDALGADGFVTNPVGTGPFMFESYTPQNSVELVANDDYFRGAPALAGVEVRFIADATTRELALQSGELHVAAGLPEAQFADRINEQEGLVADVFGVGEVLWLNINMEIEPFDDPLVREAVILALSRDGHIALSGAPVGEAVYSPVPAQLMDGGL 345          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7W1DXK0_9CHLR (Polyamine ABC transporter substrate-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W1DXK0_9CHLR)

HSP 1 Score: 219 bits (558), Expect = 6.680e-66
Identity = 111/173 (64.16%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLP+VANY+GG+II   A EA+G D F + PVGTGPF F +YTPQNSV+L A+D +FRGAPKLGGVEVR++ D +SREL LQSG+LD   GL EAQWVDR+N    LQ DVFGVGEV F+N +V  E   DPKVR+AI  A++RE+ LAL G PV+  V+SVVPA  MPGGL
Sbjct:  173 LFLPKVANYNGGFIICSQALEAMGDDIFKTHPVGTGPFIFESYTPQNSVVLTANDDYFRGAPKLGGVEVRYMPDVSSRELGLQSGELDAASGLSEAQWVDRINAEGTLQADVFGVGEVAFVNFNVTAEPFNDPKVRQAIAYALSREEHLALYGEPVAESVYSVVPAQLMPGGL 345          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7V9VDN7_9CHLR (Polyamine ABC transporter substrate-binding protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VDN7_9CHLR)

HSP 1 Score: 214 bits (545), Expect = 3.100e-65
Identity = 104/173 (60.12%), Postives = 134/173 (77.46%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLP+VANYSGG+I+   A EALG + F +APVGTGPF F+ Y PQN+V L A+D +FRG PKL GVE R++AD TS +L LQ+ +LDVI GL EAQWVD++NG +GL  D+FG  EV F+N +   E L +P+VR+AI  A+NR+D +ALSG PV+APV+SVVP++FM GGL
Sbjct:  171 LFLPKVANYSGGFIVCSQAVEALGDEAFKTAPVGTGPFMFSQYNPQNAVTLVANDDYFRGQPKLAGVEARYIADSTSLQLGLQARELDVIDGLNEAQWVDQINGEEGLIADIFGAAEVTFVNFNTTVEPLNNPQVRQAIAYALNRDDFVALSGEPVAAPVYSVVPSEFMDGGL 343          
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Match: A0A7V9SEG9_9CHLR (Polyamine ABC transporter substrate-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9SEG9_9CHLR)

HSP 1 Score: 213 bits (543), Expect = 1.090e-63
Identity = 108/173 (62.43%), Postives = 132/173 (76.30%), Query Frame = 1
Query:    1 LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVLLAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVDRMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLALSGAPVSAPVFSVVPADFMPGGL 519
            LFLP+VANYSGG+I+   A +A+G + F + PVGTGPF F  YTPQNSV+L A+D +FRGAPKLGGVEVR++ D +SREL LQ+G+LDV  GL EAQWV+R+N    L  DVFGV E VF+NL+V  E L DP VREAI LAV+ ++  AL GAPVS  ++SVVPA  MPGGL
Sbjct:  172 LFLPKVANYSGGFIVCAQAVDAMGDEAFKTHPVGTGPFMFENYTPQNSVVLVANDDYFRGAPKLGGVEVRYMPDTSSRELGLQAGELDVAAGLNEAQWVERINAEGNLIADVFGVAEAVFINLNVTQEPLDDPLVREAIALAVSPDEHAALRGAPVSENIYSVVPAQQMPGGL 344          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54658.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0KDU9_9CHLR6.750e-8978.03SBP_bac_5 domain-containing protein (Fragment) n=1... [more]
A0A7W0PQP1_9CHLR9.720e-8876.30SBP_bac_5 domain-containing protein n=1 Tax=Chloro... [more]
A0A7W0KE01_9CHLR2.740e-8776.30SBP_bac_5 domain-containing protein n=1 Tax=Chloro... [more]
A0A7V9VWK1_9CHLR2.430e-8576.30SBP_bac_5 domain-containing protein n=1 Tax=Chloro... [more]
A0A7V8VWB1_9CHLR9.920e-8573.99SBP_bac_5 domain-containing protein n=1 Tax=Chloro... [more]
A0A7V9VJ58_9CHLR2.560e-7167.05Polyamine ABC transporter substrate-binding protei... [more]
A0A7V8X4P4_9CHLR7.220e-6763.01SBP_bac_5 domain-containing protein n=1 Tax=Chloro... [more]
A0A7W1DXK0_9CHLR6.680e-6664.16Polyamine ABC transporter substrate-binding protei... [more]
A0A7V9VDN7_9CHLR3.100e-6560.12Polyamine ABC transporter substrate-binding protei... [more]
A0A7V9SEG9_9CHLR1.090e-6362.43Polyamine ABC transporter substrate-binding protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54658contigP-wetherbeei_contig54658:11..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog479434.Sthe_1891
PFAMsSBP_bac_5
Model size519
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.11e-63
EggNOG OGsCOG0747@1|root,COG0747@2|Bacteria,2G9YP@200795|Chloroflexi,27YXD@189775|Thermomicrobia
DescriptionBacterial extracellular solute-binding proteins, family 5 Middle
Cds size519
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.2647462-CDS-P-wetherbeei_contig54658:10..5291683186816.2647462-CDS-P-wetherbeei_contig54658:10..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54658 11..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54658.1.1prot_P-wetherbeei_contig54658.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54658 11..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54658.1.1

>prot_P-wetherbeei_contig54658.1.1 ID=prot_P-wetherbeei_contig54658.1.1|Name=mRNA_P-wetherbeei_contig54658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
LFLPQVANYSGGYIIPQAAYEALGADGFTSAPVGTGPFAFNAYTPQNSVL
LAAHDAFFRGAPKLGGVEVRFVADGTSRELALQSGDLDVIVGLPEAQWVD
RMNGMDGLQVDVFGVGEVVFLNLDVNHEILKDPKVREAILLAVNREDTLA
LSGAPVSAPVFSVVPADFMPGGL
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mRNA from alignment at P-wetherbeei_contig54658:11..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54658.1.1 ID=mRNA_P-wetherbeei_contig54658.1.1|Name=mRNA_P-wetherbeei_contig54658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54658:11..529- (Phaeothamnion wetherbeei SAG_119_79)
CTCTTCCTGCCGCAGGTGGCGAACTACTCCGGCGGCTACATCATCCCGCA GGCCGCCTACGAGGCGCTGGGCGCGGATGGCTTCACGTCCGCCCCGGTGG GAACCGGTCCGTTCGCGTTCAACGCCTACACGCCGCAGAACTCCGTGCTG CTCGCCGCGCACGATGCCTTCTTCCGGGGCGCGCCGAAGCTCGGCGGGGT GGAGGTCCGCTTCGTGGCGGACGGCACCAGCCGCGAGCTGGCGCTCCAGT CGGGCGATCTCGACGTCATCGTCGGCCTGCCGGAAGCGCAGTGGGTCGAC CGGATGAACGGGATGGACGGCCTGCAGGTCGATGTCTTCGGCGTGGGGGA GGTCGTCTTCCTCAACCTCGATGTGAACCACGAGATCCTGAAGGACCCCA AGGTGCGCGAGGCGATCCTCCTGGCCGTGAACCGGGAGGACACACTGGCC CTCAGCGGGGCGCCGGTCTCGGCGCCGGTCTTCTCGGTGGTGCCGGCGGA CTTCATGCCGGGCGGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54658:11..529-

>mRNA_P-wetherbeei_contig54658.1.1 ID=mRNA_P-wetherbeei_contig54658.1.1|Name=mRNA_P-wetherbeei_contig54658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54658:11..529- (Phaeothamnion wetherbeei SAG_119_79)
CTCTTCCTGCCGCAGGTGGCGAACTACTCCGGCGGCTACATCATCCCGCA
GGCCGCCTACGAGGCGCTGGGCGCGGATGGCTTCACGTCCGCCCCGGTGG
GAACCGGTCCGTTCGCGTTCAACGCCTACACGCCGCAGAACTCCGTGCTG
CTCGCCGCGCACGATGCCTTCTTCCGGGGCGCGCCGAAGCTCGGCGGGGT
GGAGGTCCGCTTCGTGGCGGACGGCACCAGCCGCGAGCTGGCGCTCCAGT
CGGGCGATCTCGACGTCATCGTCGGCCTGCCGGAAGCGCAGTGGGTCGAC
CGGATGAACGGGATGGACGGCCTGCAGGTCGATGTCTTCGGCGTGGGGGA
GGTCGTCTTCCTCAACCTCGATGTGAACCACGAGATCCTGAAGGACCCCA
AGGTGCGCGAGGCGATCCTCCTGGCCGTGAACCGGGAGGACACACTGGCC
CTCAGCGGGGCGCCGGTCTCGGCGCCGGTCTTCTCGGTGGTGCCGGCGGA
CTTCATGCCGGGCGGCCTG
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