mRNA_P-wetherbeei_contig54649.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54649.3.1
Unique NamemRNA_P-wetherbeei_contig54649.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54649.3.1 vs. uniprot
Match: A0A7V9KME3_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9KME3_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.520e-8
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = -2 
Query:   27 NRNRIRGILGRTSGPLIAKSRSIKGHGCRSGRGAVKAIELTWGGLHRVPTGTEEAVRRP 203
            N+NRI GI  R S  L  K  SIKG GC+SG GA+KA+ELT G L RV     + +R P
Sbjct:    2 NKNRIGGIRRRASWQLTTKPISIKGAGCKSGGGALKAVELTSGDLLRVAKSRLKGLRGP 60
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BLAST of mRNA_P-wetherbeei_contig54649.3.1 vs. uniprot
Match: UPI001A9E2486 (hypothetical protein n=1 Tax=Rhizobium azibense TaxID=1136135 RepID=UPI001A9E2486)

HSP 1 Score: 54.7 bits (130), Expect = 3.520e-8
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = -2 
Query:   60 ERSRDLTNRNRIRGILGRTSGPLIAKSRSIKGHGCRSGRGAVKAIELTWGGLHRV 224
            E++RD  ++NRIRG+ GRTSG + AKS  IK  G +SG  A KA++LT G L RV
Sbjct:    1 EQTRDPMDKNRIRGLPGRTSGQMTAKSMVIKDRGGKSGGCAGKAVDLTSGDLRRV 55
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BLAST of mRNA_P-wetherbeei_contig54649.3.1 vs. uniprot
Match: A0A7V9KNI2_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9KNI2_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.980e-7
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = -2 
Query:   69 NRNRIRGILGRTSGPLIAKSRSIKGHGCRSGRGAVKAIELTWGGL 203
            N+NRI GI  RTS  L  KS SIKG GC+SG GA+KA+ELT G L
Sbjct:    2 NKNRIGGIRRRTSWQLTTKSISIKGAGCKSGGGALKAVELTSGDL 46
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54649.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7V9KME3_9BACT3.520e-852.54Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
UPI001A9E24863.520e-854.55hypothetical protein n=1 Tax=Rhizobium azibense Ta... [more]
A0A7V9KNI2_9BACT1.980e-764.44Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54649contigP-wetherbeei_contig54649:8..262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.1774764-CDS-P-wetherbeei_contig54649:7..2621683186816.1774764-CDS-P-wetherbeei_contig54649:7..262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54649 8..262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54649.3.1prot_P-wetherbeei_contig54649.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54649 8..262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54649.3.1

>prot_P-wetherbeei_contig54649.3.1 ID=prot_P-wetherbeei_contig54649.3.1|Name=mRNA_P-wetherbeei_contig54649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
PLLTPAPRSGRLTASSVPVGTRCRPPQVSSIAFTAPLPDLQPWPLMDLDF
AISGPLVRPRMPRIRFLFVRSRLRSALPSDATSR*
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mRNA from alignment at P-wetherbeei_contig54649:8..262-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54649.3.1 ID=mRNA_P-wetherbeei_contig54649.3.1|Name=mRNA_P-wetherbeei_contig54649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig54649:8..262- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTGCTGACTCCTGCACCGCGGTCAGGTCGCCTCACGGCTTCCTCAGT
TCCAGTTGGAACACGGTGCAGGCCTCCCCAGGTAAGCTCGATCGCTTTCA
CCGCACCCCTGCCGGATCTACAGCCATGGCCTTTGATGGATCTGGACTTC
GCGATTAGTGGCCCGCTCGTCCGGCCAAGGATGCCTCGTATCCGGTTTCT
GTTCGTCAGGTCGCGGCTTCGCTCCGCACTGCCTTCAGACGCCACCTCGC
GATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54649:8..262-

>mRNA_P-wetherbeei_contig54649.3.1 ID=mRNA_P-wetherbeei_contig54649.3.1|Name=mRNA_P-wetherbeei_contig54649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig54649:8..262- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTGCTGACTCCTGCACCGCGGTCAGGTCGCCTCACGGCTTCCTCAGT
TCCAGTTGGAACACGGTGCAGGCCTCCCCAGGTAAGCTCGATCGCTTTCA
CCGCACCCCTGCCGGATCTACAGCCATGGCCTTTGATGGATCTGGACTTC
GCGATTAGTGGCCCGCTCGTCCGGCCAAGGATGCCTCGTATCCGGTTTCT
GTTCGTCAGGTCGCGGCTTCGCTCCGCACTGCCTTCAGACGCCACCTCGC
GATGA
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