mRNA_P-wetherbeei_contig54603.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54603.1.1
Unique NamemRNA_P-wetherbeei_contig54603.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54603.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54603contigP-wetherbeei_contig54603:17..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122611.KB903963_gene4650
PFAMsTPR_16,TPR_2,TPR_8
Model size387
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00066
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,2I1MZ@201174|Actinobacteria,4EMYW@85012|Streptosporangiales
DescriptionTetratricopeptide repeat
Cds size357
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.8035707-UTR-P-wetherbeei_contig54603:16..461683186815.8035707-UTR-P-wetherbeei_contig54603:16..46Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54603 17..46 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.8160243-CDS-P-wetherbeei_contig54603:46..4031683186815.8160243-CDS-P-wetherbeei_contig54603:46..403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54603 47..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54603.1.1prot_P-wetherbeei_contig54603.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54603 47..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54603.1.1

>prot_P-wetherbeei_contig54603.1.1 ID=prot_P-wetherbeei_contig54603.1.1|Name=mRNA_P-wetherbeei_contig54603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MAIKLTPGLEDAWFGRGRAWSERGDHQRAIADLTRAMEIKPALARTYVVR
GESWSSLGDSQRALADFEQAIRLEPGNHPFAYHARGALLRRSGSFDAAIA
SHDQGLRIDPVNAYGFMSR
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mRNA from alignment at P-wetherbeei_contig54603:17..403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54603.1.1 ID=mRNA_P-wetherbeei_contig54603.1.1|Name=mRNA_P-wetherbeei_contig54603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig54603:17..403+ (Phaeothamnion wetherbeei SAG_119_79)
GACTACAGCCGCGCCGTGGTCGATTTCGACATGGCGATAAAGCTCACTCC
GGGCCTCGAGGACGCGTGGTTCGGGCGCGGCCGGGCGTGGTCGGAGCGCG
GCGATCATCAGCGCGCGATCGCCGACCTCACCCGCGCGATGGAGATCAAG
CCTGCGCTGGCGCGGACCTATGTGGTGCGCGGCGAATCCTGGTCATCGCT
CGGCGACAGCCAGCGCGCACTCGCTGATTTCGAACAGGCGATCCGGCTCG
AGCCCGGCAATCATCCGTTCGCCTATCACGCCCGCGGTGCGCTGCTCCGC
CGCAGTGGCTCGTTCGACGCGGCGATCGCCAGTCACGATCAGGGATTGCG
GATCGATCCGGTCAACGCCTACGGCTTCATGAGTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54603:17..403+

>mRNA_P-wetherbeei_contig54603.1.1 ID=mRNA_P-wetherbeei_contig54603.1.1|Name=mRNA_P-wetherbeei_contig54603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig54603:17..403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGATAAAGCTCACTCCGGGCCTCGAGGACGCGTGGTTCGGGCGCGG
CCGGGCGTGGTCGGAGCGCGGCGATCATCAGCGCGCGATCGCCGACCTCA
CCCGCGCGATGGAGATCAAGCCTGCGCTGGCGCGGACCTATGTGGTGCGC
GGCGAATCCTGGTCATCGCTCGGCGACAGCCAGCGCGCACTCGCTGATTT
CGAACAGGCGATCCGGCTCGAGCCCGGCAATCATCCGTTCGCCTATCACG
CCCGCGGTGCGCTGCTCCGCCGCAGTGGCTCGTTCGACGCGGCGATCGCC
AGTCACGATCAGGGATTGCGGATCGATCCGGTCAACGCCTACGGCTTCAT
GAGTCGC
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