mRNA_P-wetherbeei_contig5459.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5459.1.1
Unique NamemRNA_P-wetherbeei_contig5459.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: D8LE27_ECTSI (Autophagy-related protein 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE27_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 6.440e-25
Identity = 86/272 (31.62%), Postives = 118/272 (43.38%), Query Frame = 1
Query:   16 SGGGGKSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPAAAGPAMPSAPXXXXXXXPQ-------GLTKVFVTVYNAAVDY--------------CPPATAA--------EPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAGGGGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQEYLEGRGFVQAATLNFVDAFLRSRA 744
            SG   K++TA ++LYDV+LR++V S+WL R LG++  D PA    +             +        LTK+F+TV+N  VDY              C P  A+         P+ GRAVF +G+ R+SSN+V GA +QGFK+V+RDI LHM +   DY+ EDA L    L+   G                                                                    +VQE+LE   FVQ ATLNF+DAFLR+R+
Sbjct: 1000 SGAAFKTITATLNLYDVSLRHTVASSWLPRLLGLVVGDVPAGRAVSSNCCKAGAGVGANEIGEAGGGSLTKMFITVFNGVVDYMPQSQGPGCKRMPACTPGVASGAPTTGTLPPTEGRAVFPIGVLRVSSNMVAGAPMQGFKVVIRDIGLHMSNRVTDYSKEDAGLCRGALEAQRG---------------------------------------------------------PVVSPMKTEFSSVQEFLESSQFVQIATLNFLDAFLRTRS 1214          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A4D9D8Q2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8Q2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.890e-9
Identity = 79/265 (29.81%), Postives = 111/265 (41.89%), Query Frame = 1
Query:   13 GSGGGGK------------SLTAVVDLYDVTLRYSVESTWLMRFLGIIAQ-DDPAAAGPAMPSAPXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAG--------RAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAGGGGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQEYLEGRGFVQAATLNFVDAFLRSRA 744
            G GGGG+            + +  +DLY V+ RY V+S WL+  + ++ + +D            X         +T+V+ T +++ VDY                    RAV  LG+ RLS+ LV GA VQ +K+++RD+ LHM    A Y +ED +       + GG   G                    XXXXXXXXXXX                                 +VQ++LE  GFVQ ATLNFVDA L  R+
Sbjct:    4 GRGGGGREXXXXXXXXXXAAASVYLDLYGVSWRYRVQSRWLLAAMALLGRGEDVGXXXXXXXXXXXGEEKGEAWEVTRVYCTAFDSVVDYVEDEGGXXXXXXXXXXXXGPRAVLCLGLARLSTTLVGGAGVQAYKVLLRDLLLHMTPDAAGYDLEDQS-------VLGGEALGLVYPPSLPPSSGTRREGSQGXXXXXXXXXXXRGWEGGSGWTDHPSFAPSAPPTFA---------SVQQFLEAEGFVQLATLNFVDATLLCRS 252          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A3F2RU62_9STRA (Autophagy-related protein 2 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU62_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.560e-7
Identity = 45/159 (28.30%), Postives = 69/159 (43.40%), Query Frame = 1
Query:   31 KSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPAAAGP-------------------------AMPSAPXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPG 432
            + +   ++L  ++LRY V S WL + L ++  D P    P                         A+P A            TK+FV  Y+  VDY PP  ++     R +  LG   +SSN+V GAV+QG+K+   D+ L +  + A Y   D A+ G
Sbjct:  527 REMKVELNLSHLSLRYDVRSKWLFQMLDMLLMDYPMPIIPLDSATMSDEESGELFNTVKRGGSYEAVPLAVPPKTV-----FTKLFVNFYDVIVDYAPPTLSS-----RVILVLGKISVSSNVVTGAVMQGYKISAGDLELFLTHSRASYDEIDEAILG 675          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A2P4Y5D4_9STRA (Autophagy-related protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5D4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.260e-7
Identity = 46/161 (28.57%), Postives = 69/161 (42.86%), Query Frame = 1
Query:   31 KSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPAAAGP--------------------AMPSAPXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAG 453
            + +   + L  ++LRY V S WL + L ++  + P    P                    A+P A            TK+FV  Y+  +DY P    +     R +  LG   +SSN+V GAV+QG+K+ V D+ L +  A  DY   D  L G  L + G
Sbjct:  429 REMKVELHLSHLSLRYDVRSKWLFQMLDMVLMEYPIPIIPLDSANITKIFENIKLGGDYEAVPLATAPKTV-----FTKLFVNFYDVIIDYAPLTLTS-----RVILVLGKVGVSSNVVTGAVMQGYKICVGDLELFLTQARTDYDEIDEILLGNDLFLRG 579          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A7S0PK61_9STRA (Autophagy-related protein 2 n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK61_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.390e-7
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   55 LYDVTLRYSVESTWLMRFLGIIA-----QDDPAAAGPAMPSAPXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVED 417
            L+D+T RYS+ES W  +++ I+      Q++ A     +    XX      + LTKVF+TV++A +DY PPA     +  R +  LG    S+N+V G+    FK+ + D+  ++ +    Y  ED
Sbjct:  823 LFDMTYRYSIESAWFFKYIAILQGYRFEQENKAEEKNEVXXXXXXETAD--RSLTKVFITVWDAILDYTPPAENFTDA--RVILRLGEVHSSTNMVSGSPFLSFKVCLSDMTGYLSNLRIPYGRED 944          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: W2QKA2_PHYPN (Autophagy-related protein 2 n=13 Tax=Phytophthora TaxID=4783 RepID=W2QKA2_PHYPN)

HSP 1 Score: 58.9 bits (141), Expect = 2.820e-6
Identity = 47/166 (28.31%), Postives = 69/166 (41.57%), Query Frame = 1
Query:   31 KSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPAAAGP-------------------------AMPSAPXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAG 453
            + +   + L  ++LRY V S WL + L ++  + P    P                         A+P A            TK+FV  Y+  VDY P    +     R +  LG   +SSN+V GAV+QG+K+ V D+ L +  A A Y   D  L G  L + G
Sbjct: 1120 REMKVELHLSHLSLRYDVRSKWLFQMLDMVLMEYPVPIIPLDSATMSDEESTKLFETVKRGGNYDAVPLATAPKTV-----FTKLFVNFYDVLVDYAPLTLTS-----RVILVLGKVSVSSNVVTGAVMQGYKISVGDLELFLTQARAGYEEIDEVLLGNDLFLRG 1275          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A8K1CF78_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF78_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 3.790e-6
Identity = 44/149 (29.53%), Postives = 67/149 (44.97%), Query Frame = 1
Query:   49 VDLY--DVTLRYSVESTWLMRFLGIIAQDDPAAA----GPAMPSA---------------PXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPG 432
            VDL+   V  RY V S W++    ++  + P        P+M  A               P           TK+FV++Y+A +DY P    +     R +  LG   +SSN+V GA++QG+K+ VRD+ L++      YA  D  L G
Sbjct: 1086 VDLHFSQVNWRYQVASKWMLELAELLLLEYPLPIIPLDSPSMDEAEFTAMMTRVDLDTYEPVRLAIPPKTIFTKLFVSLYDAVLDYTPTTLTS-----RVMLVLGNVGVSSNVVTGAMIQGYKISVRDVQLYLTPDAPSYAEMDERLLG 1229          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A833WZP8_PHYIN (Autophagy-related protein 2 n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WZP8_PHYIN)

HSP 1 Score: 58.5 bits (140), Expect = 3.800e-6
Identity = 47/166 (28.31%), Postives = 69/166 (41.57%), Query Frame = 1
Query:   31 KSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPAAAGP-------------------------AMPSAPXXXXXXXPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAG 453
            + +   + L  ++LRY V S WL + L ++  + P    P                         A+P A            TK+FV  Y+  VDY P    +     R +  LG   +SSN+V GAV+QG+K+ V D+ L +  A A Y   D  L G  L + G
Sbjct: 1125 REMKVELHLSHLSLRYDVRSKWLFQMLDMLLMEYPVPIIPLDSASMSDDESTKFFEMIKCGANYDAVPLATAPKTV-----FTKLFVNFYDVLVDYAPLTLTS-----RVILVLGKVSVSSNVVTGAVMQGYKISVGDLELFLTQARAGYEEIDEVLLGNDLFLRG 1280          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: G5AAQ7_PHYSP (Autophagy-related protein 2 n=6 Tax=Phytophthora TaxID=4783 RepID=G5AAQ7_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 6.840e-6
Identity = 44/161 (27.33%), Postives = 70/161 (43.48%), Query Frame = 1
Query:   31 KSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPA------AAGPAMPSAPXXXXXXXPQG--------------LTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAG 453
            + +   + L  ++LRY V S WL + L ++  + P       +AG +   +          G               TK+FV  Y+  VDY P    +     R +  LG   +SSN+V GAV+QG+K+ + D+ L +  + A Y   D  L G  L + G
Sbjct: 1145 REMKVELHLSHLSLRYDVRSKWLFQMLDMVLMEYPVPIIPLDSAGMSDEESTQVFNRIKGGGDYDAVPLATAPKTVFTKLFVNFYDVLVDYAPLTLTS-----RVILVLGKVNVSSNVVTGAVMQGYKISMGDLELFLTQSRAGYEEIDEVLLGNELFLRG 1300          
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Match: A0A662X416_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X416_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.160e-6
Identity = 43/160 (26.88%), Postives = 69/160 (43.12%), Query Frame = 1
Query:   31 KSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDP-------------AAAGPAMPSAPXXXXXXXPQGL------TKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLGMFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMAG 453
            + +   + L  ++LRY V S WL + L ++  + P             A +   + +         P  +      TK+FV  Y+  VDY P    +     R +  LG   +SSN+V GAV+QG+K+   D+ L +  A  +Y   D  L G  L + G
Sbjct: 1470 REMKVELHLSHLSLRYDVRSKWLFQMLDMLLMEYPVPIIPLDSASMSDAESAEVVQAIKRGKYEAVPLAVPPKTVFTKLFVNFYDVIVDYAPLTLTS-----RVILVLGKVSVSSNVVTGAVMQGYKISASDLQLFLTQARTNYDEIDGVLLGNDLFLRG 1624          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LE27_ECTSI6.440e-2531.62Autophagy-related protein 2 n=2 Tax=Ectocarpus Tax... [more]
A0A4D9D8Q2_9STRA2.890e-929.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A3F2RU62_9STRA4.560e-728.30Autophagy-related protein 2 n=4 Tax=Phytophthora k... [more]
A0A2P4Y5D4_9STRA8.260e-728.57Autophagy-related protein (Fragment) n=1 Tax=Phyto... [more]
A0A7S0PK61_9STRA8.390e-731.75Autophagy-related protein 2 n=1 Tax=Leptocylindrus... [more]
W2QKA2_PHYPN2.820e-628.31Autophagy-related protein 2 n=13 Tax=Phytophthora ... [more]
A0A8K1CF78_PYTOL3.790e-629.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A833WZP8_PHYIN3.800e-628.31Autophagy-related protein 2 n=3 Tax=Phytophthora i... [more]
G5AAQ7_PHYSP6.840e-627.33Autophagy-related protein 2 n=6 Tax=Phytophthora T... [more]
A0A662X416_9STRA9.160e-626.88Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5459contigP-wetherbeei_contig5459:1597..2340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LE27
PFAMsATG2_CAD,ATG_C,Chorein_N
Model size744
Max annot lvl2759|Eukaryota
KEGG koko:K17906
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-25
EggNOG OGsKOG2993@1|root,KOG2993@2759|Eukaryota
Descriptionautophagy of peroxisome
Cds size744
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.3333395-CDS-P-wetherbeei_contig5459:1596..23401683186815.3333395-CDS-P-wetherbeei_contig5459:1596..2340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5459 1597..2340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5459.1.1prot_P-wetherbeei_contig5459.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5459 1597..2340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5459.1.1

>prot_P-wetherbeei_contig5459.1.1 ID=prot_P-wetherbeei_contig5459.1.1|Name=mRNA_P-wetherbeei_contig5459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MSGGGSGGGGKSLTAVVDLYDVTLRYSVESTWLMRFLGIIAQDDPAAAGP
AMPSAPQQQQQQQPQGLTKVFVTVYNAAVDYCPPATAAEPSAGRAVFFLG
MFRLSSNLVPGAVVQGFKMVVRDIALHMCDAPADYAVEDAALPGFYLQMA
GGGGFGGGGGIGGGGVGAVFATGAGAGARGGAGARGGGRRSGGRYSSGGR
YEGGGGGGAGDGGAAAAAGAAVQEYLEGRGFVQAATLNFVDAFLRSRA
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mRNA from alignment at P-wetherbeei_contig5459:1597..2340-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5459.1.1 ID=mRNA_P-wetherbeei_contig5459.1.1|Name=mRNA_P-wetherbeei_contig5459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig5459:1597..2340- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGGGGGGGCAGTGGCGGCGGCGGAAAGTCGCTGACGGCGGTGGT GGACCTGTACGACGTCACTCTGCGATACAGCGTCGAATCCACGTGGCTCA TGCGGTTTCTGGGCATCATCGCACAAGACGACCCAGCGGCGGCCGGTCCC GCCATGCCATCAGCGCCCCAGCAGCAGCAGCAGCAGCAGCCGCAGGGGCT GACGAAGGTGTTCGTGACGGTGTACAACGCCGCGGTGGACTACTGCCCCC CGGCGACGGCCGCCGAGCCGTCGGCCGGCCGCGCCGTCTTCTTCCTCGGC ATGTTCCGCCTCAGCAGCAACCTCGTTCCTGGCGCCGTCGTGCAGGGCTT CAAGATGGTTGTGCGCGACATCGCCCTCCACATGTGCGACGCGCCCGCCG ACTACGCCGTCGAGGATGCTGCCTTGCCGGGATTCTACCTTCAGATGGCT GGCGGCGGTGGTTTCGGCGGCGGTGGCGGCATCGGTGGTGGCGGCGTCGG CGCCGTCTTCGCTACCGGCGCCGGCGCCGGCGCGCGTGGCGGCGCCGGCG CGCGTGGCGGTGGGCGCCGCAGCGGCGGAAGGTACAGCAGCGGTGGAAGG TACGAGGGTGGTGGTGGCGGTGGCGCTGGGGACGGCGGCGCAGCGGCGGC CGCCGGCGCGGCGGTGCAGGAGTACCTCGAAGGCCGCGGTTTCGTCCAGG CGGCGACGCTCAACTTCGTGGATGCGTTCCTGCGCAGCCGTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5459:1597..2340-

>mRNA_P-wetherbeei_contig5459.1.1 ID=mRNA_P-wetherbeei_contig5459.1.1|Name=mRNA_P-wetherbeei_contig5459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig5459:1597..2340- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGGGGGGGCAGTGGCGGCGGCGGAAAGTCGCTGACGGCGGTGGT
GGACCTGTACGACGTCACTCTGCGATACAGCGTCGAATCCACGTGGCTCA
TGCGGTTTCTGGGCATCATCGCACAAGACGACCCAGCGGCGGCCGGTCCC
GCCATGCCATCAGCGCCCCAGCAGCAGCAGCAGCAGCAGCCGCAGGGGCT
GACGAAGGTGTTCGTGACGGTGTACAACGCCGCGGTGGACTACTGCCCCC
CGGCGACGGCCGCCGAGCCGTCGGCCGGCCGCGCCGTCTTCTTCCTCGGC
ATGTTCCGCCTCAGCAGCAACCTCGTTCCTGGCGCCGTCGTGCAGGGCTT
CAAGATGGTTGTGCGCGACATCGCCCTCCACATGTGCGACGCGCCCGCCG
ACTACGCCGTCGAGGATGCTGCCTTGCCGGGATTCTACCTTCAGATGGCT
GGCGGCGGTGGTTTCGGCGGCGGTGGCGGCATCGGTGGTGGCGGCGTCGG
CGCCGTCTTCGCTACCGGCGCCGGCGCCGGCGCGCGTGGCGGCGCCGGCG
CGCGTGGCGGTGGGCGCCGCAGCGGCGGAAGGTACAGCAGCGGTGGAAGG
TACGAGGGTGGTGGTGGCGGTGGCGCTGGGGACGGCGGCGCAGCGGCGGC
CGCCGGCGCGGCGGTGCAGGAGTACCTCGAAGGCCGCGGTTTCGTCCAGG
CGGCGACGCTCAACTTCGTGGATGCGTTCCTGCGCAGCCGTGCC
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