mRNA_P-wetherbeei_contig54582.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54582.1.1
Unique NamemRNA_P-wetherbeei_contig54582.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: A0A537NRW1_9PROT (Acetate--CoA ligase family protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NRW1_9PROT)

HSP 1 Score: 272 bits (696), Expect = 1.600e-85
Identity = 137/175 (78.29%), Postives = 149/175 (85.14%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAK 525
            AE+AR  +KPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYG+ARMKSVT+FVETLKFLHHGGPL D+R+VSMSCSGGEAALIADMA+E+KV FP FD  TK  V ATLNEYVSIDNPLDYHTFIW+Q D LT T+SAVL GGFD  +LILD PT        W+V AK
Sbjct:  165 AEIARFNRKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGVARMKSVTAFVETLKFLHHGGPLKDNRLVSMSCSGGEAALIADMAIEKKVRFPEFDSSTKPRVAATLNEYVSIDNPLDYHTFIWNQEDKLTTTFSAVLAGGFDVAMLILDIPTSPSMRPDTWLVTAK 339          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: A0A2W2BHP6_9HYPH (ATP-grasp domain-containing protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BHP6_9HYPH)

HSP 1 Score: 265 bits (676), Expect = 4.570e-82
Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAKA 528
            A +AR  K P++ LKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSV++F ETLKFLH+GGP+ DSR+VS+SCSGGEAAL+ADMALER VSFPPFD +TK  V ATLNEYV+IDNPLDYHTFIW Q + LTAT++ VL+GGFD G++ILD PTH      +W   A+A
Sbjct:  218 AAIARSRKVPIVVLKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVSAFAETLKFLHNGGPIADSRLVSLSCSGGEAALVADMALERHVSFPPFDAETKPRVAATLNEYVAIDNPLDYHTFIWGQPEKLTATFTEVLKGGFDVGMVILDTPTHPKMKPDSWATTARA 393          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: A0A6G6X2B8_9HYPH (Acetate--CoA ligase family protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6X2B8_9HYPH)

HSP 1 Score: 258 bits (659), Expect = 1.650e-79
Identity = 130/176 (73.86%), Postives = 148/176 (84.09%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAKA 528
            AE AR+ +KPV+ALKTGRSEQGAKVAMSHTSSLAGADTLYDALFER+G+ARM SVT+FVETLKFLH+GGPL D+R+VSMSCSGGEAALIADMA+ R V FP FD  +K +V ATLNEYVSIDNPLDYHTFIW+Q D LTAT+SAVL  GFD  +LILD PT+       W+  A+A
Sbjct:  221 AETARRNRKPVVALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERFGVARMTSVTAFVETLKFLHNGGPLKDNRLVSMSCSGGEAALIADMAMGRDVRFPEFDSCSKPKVAATLNEYVSIDNPLDYHTFIWNQEDKLTATFSAVLSSGFDVSMLILDIPTNPAMKPDGWLTTARA 396          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: UPI0019B67A91 (Acetate--CoA ligase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019B67A91)

HSP 1 Score: 254 bits (650), Expect = 3.240e-78
Identity = 127/174 (72.99%), Postives = 147/174 (84.48%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAA 522
            A VAR+ +KPV+ALKTGRS QGAKVAMSHT+SLAGAD LYDALFERYG+AR+KSVT+F ETLK LH+GGPL  +RIVSMSCSGGEAAL ADMA+++ V F PFD +TKA+V  TLNEYVSIDNPLDYHTFIW+Q   LTAT+SAVL GG+DA +LILD PT+A  N+  W  AA
Sbjct:  219 AAVAREFRKPVVALKTGRSAQGAKVAMSHTASLAGADALYDALFERYGVARVKSVTAFAETLKLLHYGGPLAGNRIVSMSCSGGEAALAADMAMDKNVRFSPFDQETKAKVAGTLNEYVSIDNPLDYHTFIWNQEAKLTATFSAVLSGGYDAAMLILDTPTNAKMNSVNWRAAA 392          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: A0A847ZUP2_9HYPH (Acetate--CoA ligase family protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZUP2_9HYPH)

HSP 1 Score: 243 bits (619), Expect = 1.150e-73
Identity = 121/175 (69.14%), Postives = 143/175 (81.71%), Query Frame = 1
Query:    4 EVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAKA 528
            EVA+  +KP++ LKTGRSEQGAKVA+SHTSSLAGAD LYDALFER G+ARM S+T+FVE LKFLH G PL   ++VS+SCSGGEAAL ADMA+ R++SFPPFD  TK  V ATLNE+V+IDNPLDYHTFIW+Q D LT+T++AVL GGFD G+LILD PT    N AAW   A+A
Sbjct:  218 EVAKAYRKPIVVLKTGRSEQGAKVALSHTSSLAGADALYDALFERLGVARMTSITAFVEALKFLHFG-PLGGGKLVSLSCSGGEAALAADMAVGRRISFPPFDAATKPRVAATLNEFVAIDNPLDYHTFIWNQEDKLTSTFTAVLSGGFDVGMLILDTPTQTHLNPAAWHKTARA 391          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: UPI0018C71F1D (acetate--CoA ligase family protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C71F1D)

HSP 1 Score: 243 bits (619), Expect = 1.150e-73
Identity = 118/176 (67.05%), Postives = 142/176 (80.68%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAKA 528
            A  AR  KKP++A+KTG+SEQGAKV MSHTSSL+GAD LYDA+FERYGIAR+ SVT+  E LK LHHGGPLP  R+VS SCSGGEAALIADMA+ RKVSFPPF  +TK ++K +LNE+VS+DNP DYHTFIW+  + LTAT++A L GGFD GVLILD P    ++ AAW+  A+A
Sbjct:  217 AAKARSKKKPIVAIKTGKSEQGAKVTMSHTSSLSGADQLYDAMFERYGIARVTSVTALAEALKLLHHGGPLPGGRLVSHSCSGGEAALIADMAVGRKVSFPPFKEETKPKIKQSLNEFVSVDNPFDYHTFIWNDEEKLTATFTATLSGGFDCGVLILDTPALPQTDPAAWLKTARA 392          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: UPI0010C94ABB (acetate--CoA ligase family protein n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C94ABB)

HSP 1 Score: 209 bits (532), Expect = 6.990e-61
Identity = 109/172 (63.37%), Postives = 132/172 (76.74%), Query Frame = 1
Query:   10 ARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAK 525
            AR  +KP++ LKTGRS+ GA+VA SHT SLAGAD LYDA+FERYGI R  S+T FVETLKFL   GPLP +R+VS+SCSGGEAAL+ADMA  R ++FPPF   + A V+ATLN+YV+I+NPLDYHTFIW + D   AT+SA L G FDAG+LILD PT      + WV AA+
Sbjct:  231 ARLARKPIVVLKTGRSDAGARVAKSHTGSLAGADRLYDAMFERYGIIRAASMTGFVETLKFLSIVGPLPGNRVVSLSCSGGEAALVADMAEGRGLTFPPFG-DSAAAVRATLNDYVAIENPLDYHTFIWGKPDQQMATFSAALAGPFDAGILILDMPTGR-LERSDWVAAAE 400          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: UPI001185D2A6 (acetate--CoA ligase family protein n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI001185D2A6)

HSP 1 Score: 206 bits (523), Expect = 1.490e-59
Identity = 110/169 (65.09%), Postives = 130/169 (76.92%), Query Frame = 1
Query:   22 KKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAWVVAAKA 528
            +KP++ALKTGRSE GA+VA SHT SLAGAD+LY ALF+RYGIAR  S+T+FVETLKFL   GPLP +R+VSMSCSGGEAAL+ADMA    + FP F  +T   V+ TLN YV+I+NPLDYHTFIW + + L AT+SAVL G FD G LILD PT AG  +A W  AA A
Sbjct:  237 RKPIVALKTGRSEAGARVAKSHTGSLAGADSLYSALFKRYGIARATSLTTFVETLKFLCIVGPLPGNRLVSMSCSGGEAALVADMAEGLAIEFPAFG-ETAPAVRETLNAYVAIENPLDYHTFIWGRREQLEATFSAVLSGPFDLGFLILDTPT-AGLPSADWYTAADA 403          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: A0A848YHJ6_9HYPH (Acetate--CoA ligase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A848YHJ6_9HYPH)

HSP 1 Score: 195 bits (495), Expect = 1.630e-55
Identity = 94/170 (55.29%), Postives = 125/170 (73.53%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAPTHAGSNAAAW 510
            A  AR  +KPVIALKTGRSEQGAK   SHT+SL+G+D LY+ALFERYGIAR+ ++++F ETL  LHHGGP+    ++SMSCSGGEAAL+AD+    K++ P F   +K  + A LNE+V ++NPLDYHTFIW Q + LTA Y+  + GGFDA +L++D P     + ++W
Sbjct:  229 AAKARHNRKPVIALKTGRSEQGAKTTRSHTNSLSGSDDLYNALFERYGIARVSTMSAFTETLILLHHGGPVEGYNLLSMSCSGGEAALVADLTEPMKLTTPAFPEHSKKALAAALNEFVQLENPLDYHTFIWGQREALTACYAGAMSGGFDASMLLIDTPDGDDLDKSSW 398          
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Match: UPI0019E17C1A (Acetate--CoA ligase family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E17C1A)

HSP 1 Score: 189 bits (479), Expect = 1.230e-53
Identity = 91/160 (56.88%), Postives = 121/160 (75.62%), Query Frame = 1
Query:    1 AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIARMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSFPPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGFDAGVLILDAP 480
            A  AR    P++ALKTGRS +GA++AMSHT+SLAG D LYDALFER G+AR+ ++   +E LK L   GPLPD+R+ SMSCSGGEA+L+AD++ +R V FPP +   +  V ATLNE VS+ NPLDYHTFIW Q D +TAT++A++ GG+D  +++LD P
Sbjct:  222 AAAARAAGIPMVALKTGRSIKGAEIAMSHTASLAGPDGLYDALFERLGVARVHTIPELLECLKLLSVVGPLPDNRVCSMSCSGGEASLMADLSEDRAVEFPPMEAGHRERVAATLNELVSVSNPLDYHTFIWGQEDQITATFTAMMSGGYDLSMVVLDFP 381          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54582.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537NRW1_9PROT1.600e-8578.29Acetate--CoA ligase family protein (Fragment) n=1 ... [more]
A0A2W2BHP6_9HYPH4.570e-8273.30ATP-grasp domain-containing protein n=1 Tax=Aestua... [more]
A0A6G6X2B8_9HYPH1.650e-7973.86Acetate--CoA ligase family protein n=3 Tax=Hyphomi... [more]
UPI0019B67A913.240e-7872.99Acetate--CoA ligase family protein n=1 Tax=Hyphomi... [more]
A0A847ZUP2_9HYPH1.150e-7369.14Acetate--CoA ligase family protein n=1 Tax=Phyllob... [more]
UPI0018C71F1D1.150e-7367.05acetate--CoA ligase family protein n=1 Tax=Aestuar... [more]
UPI0010C94ABB6.990e-6163.37acetate--CoA ligase family protein n=1 Tax=Rhodoli... [more]
UPI001185D2A61.490e-5965.09acetate--CoA ligase family protein n=1 Tax=Rhodoli... [more]
A0A848YHJ6_9HYPH1.630e-5555.29Acetate--CoA ligase family protein n=1 Tax=Hyphomi... [more]
UPI0019E17C1A1.230e-5356.88Acetate--CoA ligase family protein n=1 Tax=Proteob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54582contigP-wetherbeei_contig54582:1..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1116369.KB890024_gene3719
PFAMsATP-grasp_5,CoA_binding_2,Succ_CoA_lig
Model size528
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00004,RC00012,RC00043,RC00070,RC02746,RC02816
KEGG koko:K01895
KEGG ReactionR00235,R00236,R00316,R00926,R01354
KEGG Pathwayko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00357
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.9e-49
EggNOG OGsCOG0045@1|root,COG1042@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,43IJV@69277|Phyllobacteriaceae
EC6.2.1.1
DescriptionAcyl-CoA synthetase
Cds size528
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.235481-CDS-P-wetherbeei_contig54582:0..5281683186815.235481-CDS-P-wetherbeei_contig54582:0..528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54582 1..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54582.1.1prot_P-wetherbeei_contig54582.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54582 1..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54582.1.1

>prot_P-wetherbeei_contig54582.1.1 ID=prot_P-wetherbeei_contig54582.1.1|Name=mRNA_P-wetherbeei_contig54582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
AEVARQLKKPVIALKTGRSEQGAKVAMSHTSSLAGADTLYDALFERYGIA
RMKSVTSFVETLKFLHHGGPLPDSRIVSMSCSGGEAALIADMALERKVSF
PPFDPKTKAEVKATLNEYVSIDNPLDYHTFIWDQFDNLTATYSAVLRGGF
DAGVLILDAPTHAGSNAAAWVVAAKA
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mRNA from alignment at P-wetherbeei_contig54582:1..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54582.1.1 ID=mRNA_P-wetherbeei_contig54582.1.1|Name=mRNA_P-wetherbeei_contig54582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54582:1..528+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGGTCGCCCGCCAGTTAAAAAAGCCGGTGATCGCGCTCAAAACCGG CCGCTCCGAGCAAGGCGCAAAAGTGGCCATGAGCCACACCTCATCGCTTG CCGGCGCCGACACCCTCTATGATGCGCTGTTCGAGCGTTACGGCATCGCC CGCATGAAGTCGGTGACGTCCTTTGTGGAAACCCTGAAGTTTCTTCACCA CGGCGGACCCTTGCCGGACAGCCGCATTGTGTCCATGAGCTGTTCGGGGG GCGAAGCGGCCCTCATTGCCGATATGGCGCTGGAGCGCAAAGTGAGCTTC CCGCCCTTTGACCCAAAAACCAAGGCGGAAGTGAAAGCCACCCTCAATGA ATATGTCTCAATCGACAATCCGCTCGACTATCACACCTTCATCTGGGACC AATTCGACAATCTGACGGCAACCTATTCAGCCGTGTTGCGTGGCGGCTTT GATGCAGGCGTGCTGATCCTCGATGCGCCAACCCATGCGGGCAGCAATGC CGCCGCCTGGGTCGTCGCGGCAAAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54582:1..528+

>mRNA_P-wetherbeei_contig54582.1.1 ID=mRNA_P-wetherbeei_contig54582.1.1|Name=mRNA_P-wetherbeei_contig54582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54582:1..528+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGGTCGCCCGCCAGTTAAAAAAGCCGGTGATCGCGCTCAAAACCGG
CCGCTCCGAGCAAGGCGCAAAAGTGGCCATGAGCCACACCTCATCGCTTG
CCGGCGCCGACACCCTCTATGATGCGCTGTTCGAGCGTTACGGCATCGCC
CGCATGAAGTCGGTGACGTCCTTTGTGGAAACCCTGAAGTTTCTTCACCA
CGGCGGACCCTTGCCGGACAGCCGCATTGTGTCCATGAGCTGTTCGGGGG
GCGAAGCGGCCCTCATTGCCGATATGGCGCTGGAGCGCAAAGTGAGCTTC
CCGCCCTTTGACCCAAAAACCAAGGCGGAAGTGAAAGCCACCCTCAATGA
ATATGTCTCAATCGACAATCCGCTCGACTATCACACCTTCATCTGGGACC
AATTCGACAATCTGACGGCAACCTATTCAGCCGTGTTGCGTGGCGGCTTT
GATGCAGGCGTGCTGATCCTCGATGCGCCAACCCATGCGGGCAGCAATGC
CGCCGCCTGGGTCGTCGCGGCAAAGGCG
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