mRNA_P-wetherbeei_contig54570.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54570.1.1
Unique NamemRNA_P-wetherbeei_contig54570.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54570.1.1 vs. uniprot
Match: A0A2D7RDW1_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2D7RDW1_9GAMM)

HSP 1 Score: 80.1 bits (196), Expect = 6.650e-15
Identity = 53/153 (34.64%), Postives = 89/153 (58.17%), Query Frame = 1 
Query:    7 VPPGHTVIFFQRILHIVTPRKLKFDSYRQFRCWRITRARERPAPLNGWREMMQCVKEFAVPRLPSSQVPPMYSSNHASCFLFKATENDPIHWSHLKVKSVCFDDEKICKGKNNAGKPYRMVRRFMPSLKELHMENGVRP-YELQEVDFMYPNR 462
            +PPGH  IF+++++H V   K K+ + R F  WR+T++ +    ++G   + + +K+ A+  L S Q+PPMY+  H  C++ K  +   I      +   C + ++I  GK  AG  YR+V RFM SLKEL M+  + P YE +E++ + P+R
Sbjct:  182 IPPGHIFIFYEKMVHEVKRSKNKYVN-RLFTGWRLTKSDQ---CIHGNENLRKMLKDKAIIPLKSGQIPPMYAKMHFLCWVDKIVDFTNI------IDEKCIETKEIKTGKK-AG-VYRLVHRFMKSLKELDMD--IYPEYEEREIEILIPHR 320
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BLAST of mRNA_P-wetherbeei_contig54570.1.1 vs. uniprot
Match: A0A0L0GG58_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GG58_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 1.290e-5
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    7 VPPGHTVIFFQRILHIVTPRKLKFDSYRQFRCWRITRARERPAPLNGWREMMQCVKEFAVPRLPSSQVPPMYSSNH 234
            +PPGH ++F+++ILH +   K + D YRQF  WR++   E P   N    + + +   AV  L S Q+PPMY+  H
Sbjct:  338 IPPGHILVFYEKILHEIEATKRRTDMYRQFLGWRMSPTGE-PLVAN----LRELLATQAVVPLKSGQMPPMYAKLH 408
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D7RDW1_9GAMM6.650e-1534.64Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A0L0GG58_9EUKA1.290e-538.16Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54570contigP-wetherbeei_contig54570:25..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_00068T0
PFAMsREJ
Model size474
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.11e-06
EggNOG OGs2D0VN@1|root,2SFP5@2759|Eukaryota
DescriptionREJ domain
Cds size474
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.1604443-CDS-P-wetherbeei_contig54570:24..4981683186815.1604443-CDS-P-wetherbeei_contig54570:24..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54570 25..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54570.1.1prot_P-wetherbeei_contig54570.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54570 25..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54570.1.1

>prot_P-wetherbeei_contig54570.1.1 ID=prot_P-wetherbeei_contig54570.1.1|Name=mRNA_P-wetherbeei_contig54570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
IIVPPGHTVIFFQRILHIVTPRKLKFDSYRQFRCWRITRARERPAPLNGW
REMMQCVKEFAVPRLPSSQVPPMYSSNHASCFLFKATENDPIHWSHLKVK
SVCFDDEKICKGKNNAGKPYRMVRRFMPSLKELHMENGVRPYELQEVDFM
YPNRKWVI
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mRNA from alignment at P-wetherbeei_contig54570:25..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54570.1.1 ID=mRNA_P-wetherbeei_contig54570.1.1|Name=mRNA_P-wetherbeei_contig54570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig54570:25..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATCATCGTGCCGCCGGGTCACACCGTCATCTTCTTCCAGAGAATCCTGCA
TATTGTGACGCCCCGGAAACTAAAATTCGACTCGTACCGTCAATTTCGGT
GCTGGCGAATCACCCGGGCTCGGGAACGACCAGCGCCACTGAACGGGTGG
CGGGAAATGATGCAATGCGTCAAGGAGTTTGCCGTCCCGCGCCTTCCGTC
GAGTCAGGTGCCCCCAATGTACAGCAGCAATCACGCAAGTTGCTTCCTGT
TCAAGGCCACGGAAAACGACCCGATCCACTGGAGCCACCTGAAAGTCAAG
AGCGTGTGCTTCGACGACGAAAAAATATGCAAAGGCAAAAACAACGCCGG
GAAGCCGTACCGCATGGTCCGCCGGTTCATGCCGTCTTTGAAGGAGCTGC
ATATGGAGAACGGCGTGCGGCCTTATGAACTGCAAGAGGTAGACTTTATG
TATCCGAATCGAAAGTGGGTGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54570:25..498+

>mRNA_P-wetherbeei_contig54570.1.1 ID=mRNA_P-wetherbeei_contig54570.1.1|Name=mRNA_P-wetherbeei_contig54570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig54570:25..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATCATCGTGCCGCCGGGTCACACCGTCATCTTCTTCCAGAGAATCCTGCA
TATTGTGACGCCCCGGAAACTAAAATTCGACTCGTACCGTCAATTTCGGT
GCTGGCGAATCACCCGGGCTCGGGAACGACCAGCGCCACTGAACGGGTGG
CGGGAAATGATGCAATGCGTCAAGGAGTTTGCCGTCCCGCGCCTTCCGTC
GAGTCAGGTGCCCCCAATGTACAGCAGCAATCACGCAAGTTGCTTCCTGT
TCAAGGCCACGGAAAACGACCCGATCCACTGGAGCCACCTGAAAGTCAAG
AGCGTGTGCTTCGACGACGAAAAAATATGCAAAGGCAAAAACAACGCCGG
GAAGCCGTACCGCATGGTCCGCCGGTTCATGCCGTCTTTGAAGGAGCTGC
ATATGGAGAACGGCGTGCGGCCTTATGAACTGCAAGAGGTAGACTTTATG
TATCCGAATCGAAAGTGGGTGATC
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