mRNA_P-wetherbeei_contig54564.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54564.1.1
Unique NamemRNA_P-wetherbeei_contig54564.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A2U8PX85_9BRAD (Ubiquinone biosynthesis O-methyltransferase n=11 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2U8PX85_9BRAD)

HSP 1 Score: 256 bits (654), Expect = 2.000e-84
Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQIHRRRGEPTAA 399
            EELVAE RQFDIVLSLEVVEHVADTD FLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIA TLAPLGFSV+ETCGLELAPI MRWHTTRSCNTNYLQI+RRRG+PTAA
Sbjct:  126 EELVAERRQFDIVLSLEVVEHVADTDCFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIASTLAPLGFSVIETCGLELAPITMRWHTTRSCNTNYLQIYRRRGDPTAA 258          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A4Z255_BRASO (Ubiquinone biosynthesis O-methyltransferase n=7 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A4Z255_BRASO)

HSP 1 Score: 170 bits (431), Expect = 1.400e-50
Identity = 84/126 (66.67%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQIHRR 378
            E+L AEG Q DIVL+LEVVEHVAD  RF+     LV PGGLLVIGTLNRT +SFVKAIIGAEY+LGWLPRGTHDWRRF++P E+   LAP  F  VET  +EL P+ MRW      +TNYLQI+RR
Sbjct:  133 EDLAAEGEQADIVLTLEVVEHVADLARFVGHVADLVRPGGLLVIGTLNRTPISFVKAIIGAEYILGWLPRGTHDWRRFVKPSELRTLLAPRRFIPVETVAVELNPLTMRWRIGGRPSTNYLQIYRR 258          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A258L3H9_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A258L3H9_9HYPH)

HSP 1 Score: 161 bits (407), Expect = 4.840e-47
Identity = 79/126 (62.70%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQIHRR 378
            E+L  E   FDIVLSLEVVEHVAD   FL A G LV PGGL+VIGTLNRT  S+VKAIIGAEYVL WLPRGTHDW +F+RPDE+   LAPL FS +E  G+ L P+  +W      + NYLQ+ RR
Sbjct:  126 EDLAGEAAAFDIVLSLEVVEHVADVGDFLRAIGRLVKPGGLMVIGTLNRTPQSYVKAIIGAEYVLRWLPRGTHDWAKFVRPDEVTAHLAPLSFSALELKGVALNPLTFKWSVGADASVNYLQVLRR 251          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: UPI0019A08E11 (Bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI0019A08E11)

HSP 1 Score: 160 bits (406), Expect = 6.480e-47
Identity = 75/117 (64.10%), Postives = 90/117 (76.92%), Query Frame = 1
Query:   28 FDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQIHRR 378
            F+IVLSLEV+EHVAD   FL A   LVAPGG+LVIGTLNRTL S+ KAI+GAEYVLGWLPRGTHDWR+F++P EI R L P GF+V+E  G+ L P+ M+W  +R    NYLQ  R+
Sbjct:  134 FNIVLSLEVIEHVADVREFLRALAPLVAPGGVLVIGTLNRTLASYAKAIVGAEYVLGWLPRGTHDWRKFVKPVEIERGLQPYGFAVLEVAGVSLDPLTMKWGVSRDYGVNYLQFLRK 250          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A258J0T4_9BRAD (Bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase (Fragment) n=1 Tax=Bradyrhizobium sp. 35-63-5 TaxID=1970326 RepID=A0A258J0T4_9BRAD)

HSP 1 Score: 160 bits (404), Expect = 1.450e-46
Identity = 74/122 (60.66%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    4 ELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQI 369
            +L  EG   D+VL+LEVVEHVA+ DRF+     LV PGG+LVIGTLNRT  SFVKAI+GAEY+LGWLPRGTHDWR+F++P E+ R L P GF+++ET G++L P  MRW       TNYLQ+
Sbjct:  134 DLAKEGECGDVVLTLEVVEHVANLDRFVGDVAGLVRPGGILVIGTLNRTATSFVKAILGAEYLLGWLPRGTHDWRKFVKPAELERMLVPHGFALMETAGVKLNPFTMRWRVGGRPTTNYLQL 255          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A1H4RJF3_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhizobiales bacterium GAS188 TaxID=1884351 RepID=A0A1H4RJF3_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 4.430e-45
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQIHRR 378
            E+LV +   FD V+SLEV+EHVAD   FL A   LVAPGG+LVIGTLNRTL SFVKAIIGAEYVL WLPRGTHDWR+F+ P E+   L+  GF +VE CG+ L P+ M+W  +   +  YLQ H++
Sbjct:  127 EQLVDQAGAFDAVMSLEVIEHVADRAAFLEALARLVAPGGILVIGTLNRTLRSFVKAIIGAEYVLRWLPRGTHDWRKFVTPRELDLDLSRRGFRMVERCGVTLEPLSMQWAISSDVSATYLQFHQK 252          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: UPI001FE2DB5F (bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Pseudochelatococcus lubricantis TaxID=1538102 RepID=UPI001FE2DB5F)

HSP 1 Score: 147 bits (371), Expect = 4.810e-42
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYL 363
            E + A G QFD+VL++EVVEHVAD + F+AAT ++V PGGLLV+ TLNRT  SF  AI+GAEYVL WLPRGTHDWRRF+ PDE+A  ++  G +V +  G+   P+G  W T+   + NY+
Sbjct:   91 ESVAASGEQFDVVLAMEVVEHVADVEAFVAATCAVVRPGGLLVMATLNRTAKSFALAIVGAEYVLRWLPRGTHDWRRFITPDELAAAISRHGLAVTDRTGVVYRPLGDTWQTSSDLSVNYM 211          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A126NRM9_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Bosea sp. PAMC 26642 TaxID=1792307 RepID=A0A126NRM9_9HYPH)

HSP 1 Score: 145 bits (366), Expect = 6.960e-41
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQIHRRRG 384
            E LVAEG+ FDIVL++EVVEHVAD + F+AA  + V PGG+LV+ TLNRTL S+  AI+GAEYVL WLPRGTHDW +F+ PDE+ + +   G  + E+ G+   P+  RW T R  + NY+    RRG
Sbjct:  124 EALVAEGKTFDIVLAMEVVEHVADVEAFVAACCAAVKPGGVLVMATLNRTLKSYALAIVGAEYVLRWLPRGTHDWNKFVTPDELGQAIEANGLDLGESTGVVYNPLTDRWSTARDTDVNYMLAASRRG 251          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A516H222_9PROT (Ubiquinone biosynthesis O-methyltransferase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H222_9PROT)

HSP 1 Score: 144 bits (364), Expect = 1.250e-40
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQI 369
            E L A G QFD VL+LEVVEHVAD D FLAA G +V PGGLL+  TLNRT  SF   I+ AEY+LGW+PRGTHDW++F++P E+A +L   G S+ E  G+  +P+  RW   R  + NY+ +
Sbjct:  120 EALAAAGEQFDAVLALEVVEHVADLDGFLAACGQMVKPGGLLIAATLNRTPKSFALGIVAAEYILGWVPRGTHDWKKFLKPHELAGSLRRAGLSLGEVAGVSYSPLNDRWSIGRDTDVNYMLV 242          
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Match: A0A4R6WFJ9_9PROT (Ubiquinone biosynthesis O-methyltransferase n=2 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WFJ9_9PROT)

HSP 1 Score: 144 bits (364), Expect = 2.670e-40
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    1 EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRTLVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCGLELAPIGMRWHTTRSCNTNYLQI 369
            E+LVA+G++FDIVL++E+VEHVAD D FLAA   LV PGGLL + T++RT  S++ AI+GAEYVL WLPRGTHDW RF+RP E+AR L   G  + E  G+   P+   +H +R  + NY+ +
Sbjct:  144 EDLVAKGQRFDIVLAMEIVEHVADVDAFLAALSRLVKPGGLLFMATMSRTAKSYLMAIVGAEYVLRWLPRGTHDWNRFIRPSELARGLRRHGLDIAELTGVSYNPLKDNFHLSRDLDVNYMAL 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54564.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U8PX85_9BRAD2.000e-8494.74Ubiquinone biosynthesis O-methyltransferase n=11 T... [more]
A4Z255_BRASO1.400e-5066.67Ubiquinone biosynthesis O-methyltransferase n=7 Ta... [more]
A0A258L3H9_9HYPH4.840e-4762.70Ubiquinone biosynthesis O-methyltransferase n=2 Ta... [more]
UPI0019A08E116.480e-4764.10Bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A258J0T4_9BRAD1.450e-4660.66Bifunctional 3-demethylubiquinol 3-O-methyltransfe... [more]
A0A1H4RJF3_9HYPH4.430e-4559.52Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
UPI001FE2DB5F4.810e-4255.37bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A126NRM9_9HYPH6.960e-4153.91Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A516H222_9PROT1.250e-4053.66Ubiquinone biosynthesis O-methyltransferase n=3 Ta... [more]
A0A4R6WFJ9_9PROT2.670e-4053.66Ubiquinone biosynthesis O-methyltransferase n=2 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54564contigP-wetherbeei_contig54564:3..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog335659.S23_23160
PFAMsMethyltransf_11
Model size402
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568
KEGG ReactionR04988,R05614,R08769,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.82e-86
EggNOG OGsCOG2227@1|root,COG2227@2|Bacteria,1R7EG@1224|Proteobacteria,2U3Q8@28211|Alphaproteobacteria,3JVMU@41294|Bradyrhizobiaceae
EC2.1.1.222,2.1.1.64
DescriptionO-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway
Cds size402
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.0984995-CDS-P-wetherbeei_contig54564:2..4041683186815.0984995-CDS-P-wetherbeei_contig54564:2..404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54564 3..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54564.1.1prot_P-wetherbeei_contig54564.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54564 3..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54564.1.1

>prot_P-wetherbeei_contig54564.1.1 ID=prot_P-wetherbeei_contig54564.1.1|Name=mRNA_P-wetherbeei_contig54564.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
EELVAEGRQFDIVLSLEVVEHVADTDRFLAATGSLVAPGGLLVIGTLNRT
LVSFVKAIIGAEYVLGWLPRGTHDWRRFMRPDEIARTLAPLGFSVVETCG
LELAPIGMRWHTTRSCNTNYLQIHRRRGEPTAA*
back to top

mRNA from alignment at P-wetherbeei_contig54564:3..404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54564.1.1 ID=mRNA_P-wetherbeei_contig54564.1.1|Name=mRNA_P-wetherbeei_contig54564.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig54564:3..404+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCTGGTCGCCGAAGGGCGGCAGTTCGACATCGTGCTATCGCTCGA GGTCGTCGAGCACGTCGCGGACACCGATCGCTTTCTCGCTGCCACCGGCA GCCTGGTTGCGCCCGGCGGCCTGCTGGTGATCGGCACGTTGAACCGCACG CTGGTGTCGTTCGTGAAGGCGATCATCGGGGCGGAATATGTGCTGGGCTG GTTGCCCCGCGGCACGCACGACTGGCGTCGCTTCATGCGGCCGGACGAGA TCGCGCGCACGCTTGCTCCGCTCGGCTTCTCCGTCGTCGAGACCTGCGGA CTGGAACTCGCGCCGATCGGCATGCGCTGGCATACGACCCGCTCATGCAA CACCAACTATCTCCAGATCCACCGGCGGCGCGGCGAGCCGACGGCGGCAT GA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54564:3..404+

>mRNA_P-wetherbeei_contig54564.1.1 ID=mRNA_P-wetherbeei_contig54564.1.1|Name=mRNA_P-wetherbeei_contig54564.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig54564:3..404+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCTGGTCGCCGAAGGGCGGCAGTTCGACATCGTGCTATCGCTCGA
GGTCGTCGAGCACGTCGCGGACACCGATCGCTTTCTCGCTGCCACCGGCA
GCCTGGTTGCGCCCGGCGGCCTGCTGGTGATCGGCACGTTGAACCGCACG
CTGGTGTCGTTCGTGAAGGCGATCATCGGGGCGGAATATGTGCTGGGCTG
GTTGCCCCGCGGCACGCACGACTGGCGTCGCTTCATGCGGCCGGACGAGA
TCGCGCGCACGCTTGCTCCGCTCGGCTTCTCCGTCGTCGAGACCTGCGGA
CTGGAACTCGCGCCGATCGGCATGCGCTGGCATACGACCCGCTCATGCAA
CACCAACTATCTCCAGATCCACCGGCGGCGCGGCGAGCCGACGGCGGCAT
GA
back to top