mRNA_P-wetherbeei_contig54535.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54535.1.1
Unique NamemRNA_P-wetherbeei_contig54535.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: UPI000A8DAA50 (hypothetical protein n=1 Tax=Streptomyces sp. CCM_MD2014 TaxID=1561022 RepID=UPI000A8DAA50)

HSP 1 Score: 58.9 bits (141), Expect = 5.330e-9
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 ELARRLVEVGFFEKKGND-DPDFRVPFLLRPALNMVQGQA 117
            E+A RLV++GFFEK+G   DP+F VPFL RPALN+VQG A
Sbjct:  468 EVALRLVDIGFFEKRGTFIDPEFWVPFLYRPALNLVQGTA 507          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: UPI001E581145 (hypothetical protein n=1 Tax=Halomonas sp. CUBES01 TaxID=2897340 RepID=UPI001E581145)

HSP 1 Score: 56.2 bits (134), Expect = 4.760e-8
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    4 LARRLVEVGFFEKKGN-DDPDFRVPFLLRPALNMVQGQA 117
            LARRL E+GFFE +G+ ++P + VPF+ RPALN+VQG+A
Sbjct:  458 LARRLAEIGFFEIRGDKNEPSYWVPFIYRPALNLVQGKA 496          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: A0A1F6D9W4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_01_FULL_56_24 TaxID=1798487 RepID=A0A1F6D9W4_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 6.510e-8
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 ELARRLVEVGFFEKKGND-DPDFRVPFLLRPALNMVQGQATE 123
            ++A RLV++GFFE +G+  +P+FRVPFL RP L ++QG+A E
Sbjct:  434 DMASRLVDIGFFETRGDKRNPEFRVPFLYRPYLKLIQGKADE 475          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: A0A2K0Y457_9SPHN (Uncharacterized protein n=1 Tax=Sphingobium sp. SA916 TaxID=1851207 RepID=A0A2K0Y457_9SPHN)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    1 ELARRLVEVGFFEKKGNDDPDFRVPFLLRPALNMVQGQA 117
            E+A +L  +GFFE+ G   P +RVPFL RPAL+++QG A
Sbjct:   33 EIAGQLETIGFFERLGGPTPAWRVPFLYRPALSLIQGSA 71          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: UPI00041F9159 (hypothetical protein n=1 Tax=Kushneria aurantia TaxID=504092 RepID=UPI00041F9159)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    4 LARRLVEVGFFEKKGNDD-PDFRVPFLLRPALNMVQGQA 117
            +ARRL E+GFFE +G+ + P + VPF+ RPALN+VQG+A
Sbjct:  458 MARRLAEIGFFEVRGDREAPSYWVPFIYRPALNLVQGKA 496          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: A0A149V9L8_9PROT (Uncharacterized protein n=1 Tax=Acetobacter malorum TaxID=178901 RepID=A0A149V9L8_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    1 ELARRLVEVGFFEKKG-NDDPDFRVPFLLRPALNMVQGQA 117
            E+  RL +VGFFE+ G N   ++RVPFL RPALN+VQG A
Sbjct:  456 EIVNRLEKVGFFERMGGNKGTNWRVPFLYRPALNLVQGSA 495          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: UPI001300172A (hypothetical protein n=1 Tax=Salinicola sp. RZ23 TaxID=1949087 RepID=UPI001300172A)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    4 LARRLVEVGFFEKKGNDDPD-FRVPFLLRPALNMVQGQATE 123
            LA RLV++GFF+K+ +   D + VPF+ RPALNMVQG+A +
Sbjct:  463 LAARLVDIGFFQKRDSKGEDTYWVPFIYRPALNMVQGKAVK 503          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: A0A6N7IIM8_9ACTN (Uncharacterized protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A6N7IIM8_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 LARRLVEVGFFEKKGN-DDPDFRVPFLLRPALNMVQGQA 117
            +A RLVEVGFFE++G+   P + VPF+ RPAL ++QG A
Sbjct:  466 IADRLVEVGFFERRGDRQQPTYWVPFMYRPALKLIQGSA 504          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: UPI000D556812 (hypothetical protein n=1 Tax=Aquimarina sp. Aq349 TaxID=1192023 RepID=UPI000D556812)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 ELARRLVEVGFFEKKGN-DDPDFRVPFLLRPALNMVQGQAT 120
            ++A+ L ++GFFE++G    P FRVPF+ RP LN++QG AT
Sbjct:  457 QIAKELEKIGFFEQRGTISSPKFRVPFMYRPYLNILQGSAT 497          
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Match: A0A831R5E0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Wildermuthbacteria bacterium TaxID=2053642 RepID=A0A831R5E0_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.200e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    4 LARRLVEVGFFEKKGN-DDPDFRVPFLLRPALNMVQGQATE 123
            +A  LV + FF +KG+ ++P + VPFL RPAL+M+QG ATE
Sbjct:  206 VAEELVNIRFFVRKGSKEEPKYWVPFLYRPALDMIQGTATE 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54535.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
UPI000A8DAA505.330e-967.50hypothetical protein n=1 Tax=Streptomyces sp. CCM_... [more]
UPI001E5811454.760e-861.54hypothetical protein n=1 Tax=Halomonas sp. CUBES01... [more]
A0A1F6D9W4_9BACT6.510e-854.76Uncharacterized protein n=1 Tax=Candidatus Kaiserb... [more]
A0A2K0Y457_9SPHN1.090e-753.85Uncharacterized protein n=1 Tax=Sphingobium sp. SA... [more]
UPI00041F91591.660e-758.97hypothetical protein n=1 Tax=Kushneria aurantia Ta... [more]
A0A149V9L8_9PROT1.090e-660.00Uncharacterized protein n=1 Tax=Acetobacter maloru... [more]
UPI001300172A1.090e-656.10hypothetical protein n=1 Tax=Salinicola sp. RZ23 T... [more]
A0A6N7IIM8_9ACTN1.490e-656.41Uncharacterized protein n=1 Tax=Streptosporangiale... [more]
UPI000D5568121.490e-651.22hypothetical protein n=1 Tax=Aquimarina sp. Aq349 ... [more]
A0A831R5E0_9BACT3.200e-653.66Uncharacterized protein n=1 Tax=Candidatus Wilderm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54535contigP-wetherbeei_contig54535:5..130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog421072.IO89_14045
Preferred namesoj
PFAMsAAA_31
Model size126
Max annot lvl2|Bacteria
KEGG koko:K03496
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0009295,GO:0016020,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044424,GO:0044464,GO:0071944
Exons1
Evalue1.6e-06
EggNOG OGsCOG1192@1|root,COG1192@2|Bacteria
Descriptionplasmid maintenance
Cds size126
COG categoryD
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.88822-CDS-P-wetherbeei_contig54535:4..1301683186814.88822-CDS-P-wetherbeei_contig54535:4..130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54535 5..130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54535.1.1prot_P-wetherbeei_contig54535.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54535 5..130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54535.1.1

>prot_P-wetherbeei_contig54535.1.1 ID=prot_P-wetherbeei_contig54535.1.1|Name=mRNA_P-wetherbeei_contig54535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
ELARRLVEVGFFEKKGNDDPDFRVPFLLRPALNMVQGQATE*
back to top

mRNA from alignment at P-wetherbeei_contig54535:5..130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54535.1.1 ID=mRNA_P-wetherbeei_contig54535.1.1|Name=mRNA_P-wetherbeei_contig54535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig54535:5..130+ (Phaeothamnion wetherbeei SAG_119_79)
GAATTGGCTAGGCGACTCGTTGAGGTTGGTTTCTTTGAAAAGAAAGGCAA TGACGATCCAGATTTTCGAGTTCCGTTCCTTCTTCGGCCGGCGCTAAACA TGGTTCAGGGGCAAGCAACCGAATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54535:5..130+

>mRNA_P-wetherbeei_contig54535.1.1 ID=mRNA_P-wetherbeei_contig54535.1.1|Name=mRNA_P-wetherbeei_contig54535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig54535:5..130+ (Phaeothamnion wetherbeei SAG_119_79)
GAATTGGCTAGGCGACTCGTTGAGGTTGGTTTCTTTGAAAAGAAAGGCAA
TGACGATCCAGATTTTCGAGTTCCGTTCCTTCTTCGGCCGGCGCTAAACA
TGGTTCAGGGGCAAGCAACCGAATAA
back to top