mRNA_P-wetherbeei_contig54513.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A8I1G7F4_9HYPH (Tyrosine-type recombinase/integrase n=1 Tax=Rhodomicrobium udaipurense TaxID=1202716 RepID=A0A8I1G7F4_9HYPH) HSP 1 Score: 146 bits (369), Expect = 1.560e-39 Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNP-ASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
+++K +D L GQ +RD+EL GFG RR+ G P YFVQ RI G+L+ LTIG HG PWT ETARK+A +LL I G +P A +R+++ + SV ++ HG +LKPRTREEY+RL R LVPAFGKK + +IT ++ R H + TP A
Sbjct: 8 KVTKTAIDRLQPGQLIRDTELSGFGARRRAGAPVYFVQTRIAGRLRWLTIGTHGIPWTAETARKQALKLLGEIAGGGDPTAPKREAKAQITLKEASVL--FMEQHGPRLKPRTREEYDRLFRLHLVPAFGKKNIIDITRPDIARFHAKRAATPSGA 161
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI000930DC18 (site-specific integrase n=1 Tax=Hyphomicrobium sp. CS1BSMeth3 TaxID=1892844 RepID=UPI000930DC18) HSP 1 Score: 143 bits (361), Expect = 5.160e-38 Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQE--GVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
RI+ +VD L G ++ D LKGFGVR+Q P YFV RI G+L+R+TIG HGSPWTP TAR+ A LL +++ GNNP ER++ R TF ++ +L +HG LK RT E Y I +L PAF KK + EIT+ +V +AH W+E AA
Sbjct: 7 RITNTVVDGLTAGSQVFDPFLKGFGVRKQSKSATPTYFVLTRIAGRLRRMTIGKHGSPWTPSTARERANHLLQSVQTGNNPILEREAARAKLMTFQELSVQFLEIHGPTLKSRTLETYTDCIELRLRPAFAKKAINEITSQDVAKAHVSWREHKTAA 163
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A3S0RGW9_HYPSQ (DUF4102 domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A3S0RGW9_HYPSQ) HSP 1 Score: 132 bits (331), Expect = 1.030e-33 Identity = 70/155 (45.16%), Postives = 102/155 (65.81%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
+++K +D L GQ +RD ELKGFG RRQ YF+ RI G+L+ +TIG+HGSPWT E+ARKEA RLL +I +G +PA+ + R + + +FT + +++ HGAKLK +R +YE L+R L PAFG + L +I +V R H++ + P A
Sbjct: 8 KVTKAAIDRLVAGQTIRDVELKGFGARRQADAVSYFLLKRINGRLRWMTIGLHGSPWTAESARKEAHRLLGSIASGGDPATLKQER-LENPSFTEASEQFMADHGAKLKAGSRVKYEILLRLYLRPAFGVRRLMDIKRADVLRFHSKLADKPATA 161
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A1E3W0R1_9HYPH (Uncharacterized protein n=2 Tax=Methyloceanibacter methanicus TaxID=1774968 RepID=A0A1E3W0R1_9HYPH) HSP 1 Score: 114 bits (286), Expect = 2.450e-27 Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
R+++N + + G+ L D ELKGFG RRQ+ +F++ R G+ + TIG GSPWT +TAR+EA RLLL I G +P + R D T +L HG KLKPRT EY+RL + ++P GK L E EV R H TPR A
Sbjct: 6 RLNRNALKKMHPGETLWDGELKGFGARRQKDAVTFFLKCRFRGRQRWCTIGRLGSPWTLDTARREALRLLLGIADGEDPVR---ASRGADTTVKEAVEQFLKEHGPKLKPRTLVEYKRLCEQVIIPKLGKLHLDEDMQREVGRLHAGLSSTPRKA 157
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI0007F08773 (site-specific integrase n=3 Tax=Rhizobiaceae TaxID=82115 RepID=UPI0007F08773) HSP 1 Score: 112 bits (281), Expect = 1.190e-26 Identity = 60/146 (41.10%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVR-RQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAH 444
+I+K +VD L G+ + D+E+KGFGVR R G Y ++ RIGG+ + +TIG HGSPWT ++AR +A RLL AG +PASERD R+ + G +K +T ++YE LIR+ ++PA G+ +A++ +V R H
Sbjct: 4 KITKRVVDQLMPGETVWDTEVKGFGVRCRSSGAKYYGLKTRIGGRQRWITIGRHGSPWTADSARADALRLLGQKAAGKDPASERDHRKQAVSVKELCERFLADYAGTHVKAKTAKDYEHLIRKLIIPALGRHRIADVKRPDVSRLH 149
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI001FF62A93 (site-specific integrase n=1 Tax=Aliiroseovarius sp. S1123 TaxID=2926404 RepID=UPI001FF62A93) HSP 1 Score: 112 bits (280), Expect = 1.660e-26 Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHG-AKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETP 465
++S VD L G L D+ELKGFGVR Q Y ++ RI G+ + LTIG HG PWTP++AR EA RLL I G +P E+ SR+++ T +A +L+ H KLKP T Y L+ ++PA G+ + E++T V + H TP
Sbjct: 7 KVSLASVDELSTGDTLWDNELKGFGVRCQAKAKSYILKTRINGRQRFLTIGRHGQPWTPKSARIEALRLLGEIAGGKDPVQEKKSRKMM-LTVGELADRFLTEHADKKLKPGTAYHYRSLLTNHVIPALGRHRIEEVSTERVSKLHNSLSSTP 158
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI0009DDAE5A (site-specific integrase n=1 Tax=Parvularcula oceani TaxID=1247963 RepID=UPI0009DDAE5A) HSP 1 Score: 112 bits (279), Expect = 2.730e-26 Identity = 68/157 (43.31%), Postives = 95/157 (60.51%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQEG-VPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERL-IRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
RI+K VD L G+ D ELKGFGV+R +G Y ++ R GG+ + LTIG HGSPWTP+TARKEA LL + G +PA+E+ + R ATF + A YL+ H + K + +R +R L+PAFG + L +IT +V + H+ + P AA
Sbjct: 13 RITKRAVDALPAGERRWDGELKGFGVQRTKGGTASYVLKFRAGGRQRWLTIGKHGSPWTPDTARKEAQALLALVAQGKDPATEKLAARD-RATFAAFAERYLAEHAERHKKASSVRDDRANLRNHLLPAFGARALDQITRQDVAKLHSSLADRPVAA 168
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: E3I768_RHOVT (Integrase family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) TaxID=648757 RepID=E3I768_RHOVT) HSP 1 Score: 110 bits (276), Expect = 5.840e-26 Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 1
Query: 7 MRISKNLVDNLGVGQELRDSELKGFGVRRQ-EGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
++I+ V L G L D ++KGF + G + ++ R+ G+ + +TIG GSPWT ETAR+EA RLL +GN+ +E+ ++R F VA ++++H KLKPRTRE Y +IR L PAFG +A+I V H R ETPR A
Sbjct: 4 IKITLTGVQALSPGSTLWDGQVKGFAAKANANGSVSFVLKTRVNGRQRWVTIGKFGSPWTVETARREALRLLGEAASGNDIGAEKQAKRAKGLLFGHVADQFIAIHFPKLKPRTRESYGTIIRLHLKPAFGATPIADIRKTSVATFHARHAETPRNA 160
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A1E2RVJ4_9HYPH (Tyrosine recombinase XerD n=1 Tax=Methyloligella halotolerans TaxID=1177755 RepID=A0A1E2RVJ4_9HYPH) HSP 1 Score: 110 bits (276), Expect = 6.760e-26 Identity = 66/155 (42.58%), Postives = 88/155 (56.77%), Query Frame = 1
Query: 10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
R+++N + + G L D ELKGFG RRQ + ++ R+ G+ + +IG GSPWT E+AR+EA RLLL+I G P S + +R V T +L HG KLKP T+ EY RL R ++VP GK L E EV R H+ TPR A
Sbjct: 4 RLTRNALKKMTPGDLLWDGELKGFGARRQRETITFCLKCRVRGRQRWYSIGRLGSPWTLESARREALRLLLSIADGEEPVSRKRDKRPV--TVEEGIEQFLDEHGPKLKPSTQAEYTRLCRLKIVPKLGKLKLDEDMRREVGRMHSGMASTPRQA 156
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A6N7AFU2_9PROT (Phage integrase family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AFU2_9PROT) HSP 1 Score: 110 bits (274), Expect = 1.750e-25 Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query: 7 MRISKNLVDNLGVGQELR-----DSELKGFGVR-RQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGA-KLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETP 465
M+++K VD+ G Q+ R DSE+KGFG+R GV Y + R G+ +R TIG HGSPWT E AR+ A LL I AGN+P + + T T +A +L+ H A K KPRT EY RL ++PA G++T+ +IT +++ R H ++TP
Sbjct: 1 MKLTKRTVDSAGPAQDGRQLIFWDSEVKGFGLRITPAGVKSYILNYRFAGRERRYTIGKHGSPWTCEEARQTAIALLRDIAAGNDPLEAKAEAKAAP-TMTDLAERFLTEHAATKCKPRTAAEYRRLFDTIILPALGRRTVKDITRMDIARIHHDLRQTP 159 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig54513.1.1 >prot_P-wetherbeei_contig54513.1.1 ID=prot_P-wetherbeei_contig54513.1.1|Name=mRNA_P-wetherbeei_contig54513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp MRISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTback to top mRNA from alignment at P-wetherbeei_contig54513:56..529+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig54513.1.1 ID=mRNA_P-wetherbeei_contig54513.1.1|Name=mRNA_P-wetherbeei_contig54513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig54513:56..529+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig54513:56..529+ >mRNA_P-wetherbeei_contig54513.1.1 ID=mRNA_P-wetherbeei_contig54513.1.1|Name=mRNA_P-wetherbeei_contig54513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig54513:56..529+ (Phaeothamnion wetherbeei SAG_119_79)back to top |