mRNA_P-wetherbeei_contig54482.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54482.2.1
Unique NamemRNA_P-wetherbeei_contig54482.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: A0A515KT28_9BRAD (Type II toxin-antitoxin system RelE/ParE family toxin n=1 Tax=Tardiphaga sp. vice352 TaxID=2592816 RepID=A0A515KT28_9BRAD)

HSP 1 Score: 67.8 bits (164), Expect = 9.850e-13
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARRWP 279
            VK R++ TA  EL+Q   ++ + +P +A   A  I      L E P+S +E+++ G+RR +V  + Y + Y I +  DE+LIVSVRH AR+ P
Sbjct:    4 VKLRWSDTARRELEQIFAFVRERSPASARSVAQRILHRARFLREFPFSGKESQVAGVRRLFVVNYPYVILYEIHQSDDEVLIVSVRHTARKQP 96          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: UPI001EE2CB8E (type II toxin-antitoxin system RelE/ParE family toxin n=1 Tax=Methylobacterium organophilum TaxID=410 RepID=UPI001EE2CB8E)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-12
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARR 273
            +K R TR A+ +LD+ + Y+ QH P  A    D + A +  L+++P++   T  +GIRR  V  + YA+ Y++    DE++I+ VRH ARR
Sbjct:    1 MKLRLTRPAAQQLDKVLIYIAQHNPSGARKVQDRVQATMQMLVDHPFAGHATARRGIRRMIVTPYPYAITYSLGA--DEVIILGVRHTARR 89          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: C0QCM4_DESAH (Uncharacterized protein n=1 Tax=Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2) TaxID=177437 RepID=C0QCM4_DESAH)

HSP 1 Score: 62.4 bits (150), Expect = 1.160e-10
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARR 273
            +K RF   A AE+ +A  Y          +F D I+AAVAE+IENP +  + EL GI+R+ VRRF Y++ Y + E  DE++I ++ H  ++
Sbjct:    1 MKLRFLEPAEAEMMEAAAYYEVQVERLGTNFLDIIEAAVAEIIENPGTWPKNEL-GIQRRLVRRFPYSILYAVHE--DEVIITAIMHQKQK 88          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: A0A5C5SEZ4_9HYPH (Type II toxin-antitoxin system RelE/ParE family toxin n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5SEZ4_9HYPH)

HSP 1 Score: 60.5 bits (145), Expect = 9.170e-10
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAAR 270
            VK R+T  A A+L+Q   Y+    P AAG  A  I  ++  L   PY  + T L  +R   V R+ Y +FYTID+ K E++I+ + H+AR
Sbjct:   17 VKVRYTTQALAQLEQIHAYITHRNPKAAGIVARRITRSIELLAAFPYMYRRTSLPHVRVLPVIRYPYLVFYTIDDAKQEVVILRIVHSAR 106          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: A0A418VI90_RHOPL (Type II toxin-antitoxin system RelE/ParE family toxin n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A418VI90_RHOPL)

HSP 1 Score: 60.1 bits (144), Expect = 9.550e-10
Identity = 31/91 (34.07%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARR 273
            +K R++  A  ELD  + Y+  H P A+   A  I   V  L + P +  +T+++ +R   V R+ + +F+ +D+  DE++IVS+RH ARR
Sbjct:    1 MKVRWSDHAVQELDAILSYIAAHQPSASAGVARRIQDRVRLLEQFPLAGHKTDVENVRALSVVRYPFVIFHVVDDVADEVVIVSIRHTARR 91          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: UPI001909D702 (Type II toxin-antitoxin system RelE/ParE family toxin n=2 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001909D702)

HSP 1 Score: 58.9 bits (141), Expect = 2.700e-9
Identity = 27/90 (30.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAAR 270
            +K RFT  A+ +L    +Y+ +H+P  A     +I  ++  L+  P   +  +++G+R+   RR+ Y ++Y++D+E DE++I++++H AR
Sbjct:    1 MKLRFTPRATQDLISIADYVREHSPQGALRVRAAILESLQNLVRFPRLGRPQKVEGVRKLVTRRYPYLVYYSLDQEADEVVILAIQHPAR 90          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: UPI000D64F742 (type II toxin-antitoxin system RelE/ParE family toxin n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI000D64F742)

HSP 1 Score: 58.9 bits (141), Expect = 2.700e-9
Identity = 25/90 (27.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAAR 270
            +K RFT+ A+ +L +  +Y+ +H+P  A     +I  ++ +L+  P   +  E++G+R+   RR+RY ++Y ++ E  E+++++++H A+
Sbjct:    1 MKLRFTQRAAKDLIEIADYVREHSPKGALRVRAAILESLRDLVRFPQLGRRQEVEGVRKLVTRRYRYLVYYRLEVEAGEIVVLAIKHPAQ 90          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: A0A2R4GNR8_RHOPL (Uncharacterized protein n=4 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A2R4GNR8_RHOPL)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-8
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARRWP 279
            +K R++  A  ELD+ + ++ +    AA   AD I      L E P +  +T+L  +R   V R+ + +F+ +D+ KDE++I+SVRH ARR P
Sbjct:    1 MKVRWSDNAVHELDEILSFIAERNVSAAEAVADLIWERTRLLGEFPLAGHKTDLTHVRALSVVRYPFVIFHKVDDAKDEVVILSVRHTARRDP 93          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: A0A327KQ48_9HYPH (Plasmid stabilization protein n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KQ48_9HYPH)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-8
Identity = 26/88 (29.55%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   10 RFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARR 273
            R+TR A A+L    +++  H P AA    D+I  ++  L+  P + +   + G+R+   R++ Y ++Y++DE   +++++++RH ARR
Sbjct:    4 RYTRRAVADLAGIADHIRFHDPAAAFRVRDAILDSIRTLVLFPRAGRRQSVAGVRKLITRKYPYLVYYSVDEATGDIVVLTIRHPARR 91          
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Match: A0A537SBS6_9PROT (Type II toxin-antitoxin system RelE/ParE family toxin n=3 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A537SBS6_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 1.530e-8
Identity = 29/91 (31.87%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   10 RFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARRWPW 282
            RFT  A A+L    +YL +  P AA     +I  ++  L+E P   ++  ++G+R+   RR+ Y  +Y +DE+ +E++I++++H AR  P+
Sbjct:    4 RFTPRAVADLISIADYLRERNPQAALSVRAAILDSLRLLLEFPKLGRDQSVEGVRKLVTRRYGYLAYYALDEQAEEVVILTIQHPARDRPF 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54482.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A515KT28_9BRAD9.850e-1338.71Type II toxin-antitoxin system RelE/ParE family to... [more]
UPI001EE2CB8E1.620e-1237.36type II toxin-antitoxin system RelE/ParE family to... [more]
C0QCM4_DESAH1.160e-1039.56Uncharacterized protein n=1 Tax=Desulforapulum aut... [more]
A0A5C5SEZ4_9HYPH9.170e-1038.89Type II toxin-antitoxin system RelE/ParE family to... [more]
A0A418VI90_RHOPL9.550e-1034.07Type II toxin-antitoxin system RelE/ParE family to... [more]
UPI001909D7022.700e-930.00Type II toxin-antitoxin system RelE/ParE family to... [more]
UPI000D64F7422.700e-927.78type II toxin-antitoxin system RelE/ParE family to... [more]
A0A2R4GNR8_RHOPL1.080e-835.48Uncharacterized protein n=4 Tax=Rhodopseudomonas T... [more]
A0A327KQ48_9HYPH1.080e-829.55Plasmid stabilization protein n=1 Tax=Rhodoplanes ... [more]
A0A537SBS6_9PROT1.530e-831.87Type II toxin-antitoxin system RelE/ParE family to... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54482contigP-wetherbeei_contig54482:167..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog177437.HRM2_20000
PFAMsParE_toxin
Model size291
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.9e-11
EggNOG OGsCOG3668@1|root,COG3668@2|Bacteria,1NHQV@1224|Proteobacteria,43B9Q@68525|delta/epsilon subdivisions,2WTGV@28221|Deltaproteobacteria,2MPRB@213118|Desulfobacterales
DescriptionParE toxin of type II toxin-antitoxin system, parDE
Cds size291
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.1120107-CDS-P-wetherbeei_contig54482:166..4571683186814.1120107-CDS-P-wetherbeei_contig54482:166..457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54482 167..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54482.2.1prot_P-wetherbeei_contig54482.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54482 167..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54482.2.1

>prot_P-wetherbeei_contig54482.2.1 ID=prot_P-wetherbeei_contig54482.2.1|Name=mRNA_P-wetherbeei_contig54482.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
VKRRFTRTASAELDQAVEYLIQHAPLAAGDFADSIDAAVAELIENPYSAQ
ETELKGIRRKYVRRFRYALFYTIDEEKDELLIVSVRHAARRWPWQA*
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mRNA from alignment at P-wetherbeei_contig54482:167..457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54482.2.1 ID=mRNA_P-wetherbeei_contig54482.2.1|Name=mRNA_P-wetherbeei_contig54482.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig54482:167..457+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAAACGTCGTTTTACGCGAACGGCGTCCGCAGAGCTCGATCAAGCTGT GGAATACCTGATCCAACACGCGCCTCTTGCTGCGGGTGATTTCGCCGACA GCATCGACGCGGCGGTGGCTGAGCTGATCGAAAATCCATATTCTGCGCAG GAAACCGAACTCAAGGGCATTCGCAGGAAATATGTTCGACGGTTTCGCTA TGCGCTGTTCTACACGATCGACGAAGAGAAGGACGAATTGCTTATCGTGA GCGTCAGGCATGCCGCTCGCCGGTGGCCGTGGCAGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54482:167..457+

>mRNA_P-wetherbeei_contig54482.2.1 ID=mRNA_P-wetherbeei_contig54482.2.1|Name=mRNA_P-wetherbeei_contig54482.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig54482:167..457+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAAACGTCGTTTTACGCGAACGGCGTCCGCAGAGCTCGATCAAGCTGT
GGAATACCTGATCCAACACGCGCCTCTTGCTGCGGGTGATTTCGCCGACA
GCATCGACGCGGCGGTGGCTGAGCTGATCGAAAATCCATATTCTGCGCAG
GAAACCGAACTCAAGGGCATTCGCAGGAAATATGTTCGACGGTTTCGCTA
TGCGCTGTTCTACACGATCGACGAAGAGAAGGACGAATTGCTTATCGTGA
GCGTCAGGCATGCCGCTCGCCGGTGGCCGTGGCAGGCCTGA
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