mRNA_P-wetherbeei_contig54454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54454.1.1
Unique NamemRNA_P-wetherbeei_contig54454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A521XEG7_9PROT (ATP synthase subunit alpha n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XEG7_9PROT)

HSP 1 Score: 253 bits (647), Expect = 4.710e-80
Identity = 126/138 (91.30%), Postives = 133/138 (96.38%), Query Frame = 1 
Query:    1 MQQLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            MQQL PSEISELI+++IQ LALS+DVRTQGTV+SVTDGICR+HGLSD MAGEMLEFP NTFGLALNLERDSVGAV+LG YEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI
Sbjct:    1 MQQLNPSEISELIKSKIQNLALSADVRTQGTVVSVTDGICRIHGLSDVMAGEMLEFPKNTFGLALNLERDSVGAVVLGPYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 138
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A4Y9RSD3_9BURK (F0F1 ATP synthase subunit alpha (Fragment) n=1 Tax=Oxalobacteraceae bacterium OM1 TaxID=2561929 RepID=A0A4Y9RSD3_9BURK)

HSP 1 Score: 238 bits (607), Expect = 9.560e-79
Identity = 117/136 (86.03%), Postives = 129/136 (94.85%), Query Frame = 1 
Query:    7 QLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            QL PSEISELI++RIQGL  ++++R QGTVISVTDGICR+HGLSDAM GEMLEFP NTFGLALNLERDSVGAVILGEYEHISEGDTVK TGR+L+VPVGPEL+GRVVN+LGQPIDGKGPVNAK+TDVIEKVAPGVI
Sbjct:    2 QLNPSEISELIKSRIQGLGDTAEIRNQGTVISVTDGICRIHGLSDAMQGEMLEFPGNTFGLALNLERDSVGAVILGEYEHISEGDTVKTTGRVLEVPVGPELVGRVVNALGQPIDGKGPVNAKLTDVIEKVAPGVI 137
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A536SNS1_9PROT (F0F1 ATP synthase subunit alpha (Fragment) n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SNS1_9PROT)

HSP 1 Score: 244 bits (624), Expect = 2.940e-78
Identity = 119/138 (86.23%), Postives = 132/138 (95.65%), Query Frame = 1 
Query:    1 MQQLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            MQQL PSEIS+LIR++IQ LALS+DVRTQGTV++VTDGICR+HGLSD M GEMLEFP NT+GLALNLERDSVGAVILGEYEHI+EGDTVKCTGRIL+VPVGPEL+GRVVNSLGQPIDGKGP+ AKMTDVIEKVAPGV+
Sbjct:    1 MQQLNPSEISDLIRSKIQNLALSADVRTQGTVVTVTDGICRIHGLSDVMQGEMLEFPKNTYGLALNLERDSVGAVILGEYEHITEGDTVKCTGRILEVPVGPELLGRVVNSLGQPIDGKGPIAAKMTDVIEKVAPGVV 138
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: UPI0019C0F8F1 (F0F1 ATP synthase subunit alpha n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019C0F8F1)

HSP 1 Score: 236 bits (602), Expect = 7.230e-78
Identity = 117/136 (86.03%), Postives = 127/136 (93.38%), Query Frame = 1 
Query:    7 QLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            QL PSEISELI++RIQ L + S+VR QG+V+SVTDGICRVHGLSD M GEMLEFPNNTFGLALNLERDSVGAVILGEYEHI+EGDTVK TGRIL+VPVGPELIGRVVN+LGQPIDGKGP+NA MTDVIEKVAPGVI
Sbjct:    2 QLNPSEISELIKSRIQNLGVGSEVRNQGSVVSVTDGICRVHGLSDVMQGEMLEFPNNTFGLALNLERDSVGAVILGEYEHITEGDTVKTTGRILEVPVGPELIGRVVNALGQPIDGKGPINAAMTDVIEKVAPGVI 137
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A537AWS5_9PROT (ATP synthase subunit alpha n=6 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AWS5_9PROT)

HSP 1 Score: 244 bits (624), Expect = 1.370e-76
Identity = 121/138 (87.68%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:    1 MQQLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            MQQL PSEISELIR +IQ L+LS+DVRTQGTV++VTDGICRVHGLSD M GEMLEFPNNTFGLALNLERDSVGAVILGEYEHI+EGDTVKCT RIL+VPVGPEL+GRVVNSLGQPIDGKGP+ AKMTDVIEKVAPGV+
Sbjct:    1 MQQLNPSEISELIRNKIQNLSLSADVRTQGTVVTVTDGICRVHGLSDVMQGEMLEFPNNTFGLALNLERDSVGAVILGEYEHITEGDTVKCTSRILEVPVGPELLGRVVNSLGQPIDGKGPILAKMTDVIEKVAPGVV 138
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A368L0Q9_9BURK (ATP synthase subunit alpha n=1 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L0Q9_9BURK)

HSP 1 Score: 244 bits (623), Expect = 1.800e-76
Identity = 121/136 (88.97%), Postives = 128/136 (94.12%), Query Frame = 1 
Query:    7 QLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            QL PSEISELI++RIQGL  ++DVR QGTV+SVTDGICRVHGLS  M GEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGD VKCTGRILDVPVGPELIGRVVN+LGQPIDGKGP+NAKMTDVIEKVAPGVI
Sbjct:    2 QLNPSEISELIKSRIQGLGTAADVRNQGTVVSVTDGICRVHGLSGVMQGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDVVKCTGRILDVPVGPELIGRVVNTLGQPIDGKGPINAKMTDVIEKVAPGVI 137
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A7V2UGV2_9BURK (F0F1 ATP synthase subunit alpha (Fragment) n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A7V2UGV2_9BURK)

HSP 1 Score: 232 bits (592), Expect = 1.850e-76
Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:    7 QLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNN-----TFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            QL P+EISELI++RI+GLA S+DVR QGTV+SVTDGI RVHGLSD M GEMLEFP N     TFGLALNLERDSVGAV+LGEYEHISEGDTVKCTGRIL+VPVGPEL+GRVVN+LGQPIDGKGPVNAKMTD+IEKVAPGVI
Sbjct:    2 QLNPAEISELIKSRIEGLAPSADVRNQGTVVSVTDGIVRVHGLSDVMQGEMLEFPANAAGQPTFGLALNLERDSVGAVVLGEYEHISEGDTVKCTGRILEVPVGPELVGRVVNALGQPIDGKGPVNAKMTDMIEKVAPGVI 142
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: UPI001ACAB3AD (Partial F-type H+-transporting ATPase subunit alpha n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001ACAB3AD)

HSP 1 Score: 233 bits (595), Expect = 1.220e-75
Identity = 115/136 (84.56%), Postives = 126/136 (92.65%), Query Frame = 1 
Query:    7 QLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            QL PSEISELI+++IQ L  SSD+RTQGTV+SVTDGICRVHGL+  M GEMLEFP NT G+ALNLERDSVGAV+LGEYEHISEGDTVK TGRIL+VPVGPEL+GRVVNSLGQPIDGKGP+NAKMTDVIEKVAPGVI
Sbjct:    2 QLNPSEISELIKSKIQNLQASSDLRTQGTVVSVTDGICRVHGLTGVMQGEMLEFPGNTIGMALNLERDSVGAVVLGEYEHISEGDTVKTTGRILEVPVGPELLGRVVNSLGQPIDGKGPINAKMTDVIEKVAPGVI 137
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: A0A1F4A2G6_9PROT (ATP synthase subunit alpha n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12 TaxID=1797487 RepID=A0A1F4A2G6_9PROT)

HSP 1 Score: 242 bits (617), Expect = 1.530e-75
Identity = 119/138 (86.23%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:    1 MQQLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            MQQLKPSEIS+LIR++IQ L LS+DVRTQGTV+SVTDGICRVHGLSD M GEMLEFP NTFGLALNLERDSVG+V+LG+Y+HI+EGDTVKCTGRIL+VPVGPEL+GRVVNSLGQPIDGKGPV AK TDVIEKVAPGVI
Sbjct:    1 MQQLKPSEISDLIRSKIQNLTLSADVRTQGTVVSVTDGICRVHGLSDVMQGEMLEFPQNTFGLALNLERDSVGSVVLGDYQHITEGDTVKCTGRILEVPVGPELLGRVVNSLGQPIDGKGPVLAKATDVIEKVAPGVI 138
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BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Match: UPI0019CE4D38 (F0F1 ATP synthase subunit alpha n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019CE4D38)

HSP 1 Score: 231 bits (590), Expect = 3.910e-75
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:    7 QLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMAGEMLEFPNN-----TFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPVGPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI 414
            QL P+EISELI++RI+GLA S+D+R QGTV+SVTDGI RVHGLSDAMAGEMLEFP       TFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRIL+VPVG ELIGRVVN+LGQPIDGKGP+NAKMTDVIEKVAPGVI
Sbjct:    2 QLNPAEISELIKSRIEGLATSADIRNQGTVLSVTDGIVRVHGLSDAMAGEMLEFPPTADGTPTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILEVPVGRELIGRVVNALGQPIDGKGPINAKMTDVIEKVAPGVI 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521XEG7_9PROT4.710e-8091.30ATP synthase subunit alpha n=3 Tax=Betaproteobacte... [more]
A0A4Y9RSD3_9BURK9.560e-7986.03F0F1 ATP synthase subunit alpha (Fragment) n=1 Tax... [more]
A0A536SNS1_9PROT2.940e-7886.23F0F1 ATP synthase subunit alpha (Fragment) n=5 Tax... [more]
UPI0019C0F8F17.230e-7886.03F0F1 ATP synthase subunit alpha n=1 Tax=Proteobact... [more]
A0A537AWS5_9PROT1.370e-7687.68ATP synthase subunit alpha n=6 Tax=Betaproteobacte... [more]
A0A368L0Q9_9BURK1.800e-7688.97ATP synthase subunit alpha n=1 Tax=Parvibium lacun... [more]
A0A7V2UGV2_9BURK1.850e-7683.69F0F1 ATP synthase subunit alpha (Fragment) n=2 Tax... [more]
UPI001ACAB3AD1.220e-7584.56Partial F-type H+-transporting ATPase subunit alph... [more]
A0A1F4A2G6_9PROT1.530e-7586.23ATP synthase subunit alpha n=1 Tax=Betaproteobacte... [more]
UPI0019CE4D383.910e-7584.40F0F1 ATP synthase subunit alpha n=1 Tax=Chitinopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54454contigP-wetherbeei_contig54454:5..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog395495.Lcho_3528
Preferred nameatpA
PFAMsATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
Model size414
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02111
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.9e-74
EggNOG OGsCOG0056@1|root,COG0056@2|Bacteria,1MUG7@1224|Proteobacteria,2VHQU@28216|Betaproteobacteria,1KJ5T@119065|unclassified Burkholderiales
EC3.6.3.14
DescriptionProduces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
Cds size414
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.8736825-CDS-P-wetherbeei_contig54454:4..4181683186813.8736825-CDS-P-wetherbeei_contig54454:4..418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54454 5..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54454.1.1prot_P-wetherbeei_contig54454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54454 5..418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54454.1.1

>prot_P-wetherbeei_contig54454.1.1 ID=prot_P-wetherbeei_contig54454.1.1|Name=mRNA_P-wetherbeei_contig54454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MQQLKPSEISELIRARIQGLALSSDVRTQGTVISVTDGICRVHGLSDAMA
GEMLEFPNNTFGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILDVPV
GPELIGRVVNSLGQPIDGKGPVNAKMTDVIEKVAPGVI
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mRNA from alignment at P-wetherbeei_contig54454:5..418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54454.1.1 ID=mRNA_P-wetherbeei_contig54454.1.1|Name=mRNA_P-wetherbeei_contig54454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig54454:5..418- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACAGCTGAAACCCTCCGAAATCAGCGAATTGATCCGCGCGAGGAT
CCAGGGCCTCGCGCTCTCGTCGGACGTTCGCACCCAGGGCACCGTCATCT
CCGTGACCGACGGCATCTGCCGTGTCCACGGCCTGTCCGACGCGATGGCC
GGCGAGATGCTCGAATTCCCCAACAATACGTTCGGCCTCGCGCTGAACCT
TGAGCGCGACTCTGTCGGCGCGGTGATCCTGGGCGAATACGAGCACATCT
CCGAGGGCGACACGGTGAAGTGCACCGGCCGGATCCTGGACGTGCCCGTC
GGCCCCGAACTCATCGGTCGCGTGGTCAACTCTCTCGGCCAGCCGATCGA
CGGCAAGGGCCCGGTCAACGCAAAGATGACTGACGTGATCGAAAAGGTCG
CGCCGGGCGTGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54454:5..418-

>mRNA_P-wetherbeei_contig54454.1.1 ID=mRNA_P-wetherbeei_contig54454.1.1|Name=mRNA_P-wetherbeei_contig54454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig54454:5..418- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACAGCTGAAACCCTCCGAAATCAGCGAATTGATCCGCGCGAGGAT
CCAGGGCCTCGCGCTCTCGTCGGACGTTCGCACCCAGGGCACCGTCATCT
CCGTGACCGACGGCATCTGCCGTGTCCACGGCCTGTCCGACGCGATGGCC
GGCGAGATGCTCGAATTCCCCAACAATACGTTCGGCCTCGCGCTGAACCT
TGAGCGCGACTCTGTCGGCGCGGTGATCCTGGGCGAATACGAGCACATCT
CCGAGGGCGACACGGTGAAGTGCACCGGCCGGATCCTGGACGTGCCCGTC
GGCCCCGAACTCATCGGTCGCGTGGTCAACTCTCTCGGCCAGCCGATCGA
CGGCAAGGGCCCGGTCAACGCAAAGATGACTGACGTGATCGAAAAGGTCG
CGCCGGGCGTGATC
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