mRNA_P-wetherbeei_contig12442.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12442.2.1
Unique NamemRNA_P-wetherbeei_contig12442.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12442.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12442contigP-wetherbeei_contig12442:1073..1972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size900
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.9789426-UTR-P-wetherbeei_contig12442:1072..13901683185948.9789426-UTR-P-wetherbeei_contig12442:1072..1390Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12442 1073..1390 -
1683185949.0049157-UTR-P-wetherbeei_contig12442:1951..19721683185949.0049157-UTR-P-wetherbeei_contig12442:1951..1972Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12442 1952..1972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.9961839-CDS-P-wetherbeei_contig12442:1390..19511683185948.9961839-CDS-P-wetherbeei_contig12442:1390..1951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12442 1391..1951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12442.2.1prot_P-wetherbeei_contig12442.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12442 1391..1951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12442.2.1

>prot_P-wetherbeei_contig12442.2.1 ID=prot_P-wetherbeei_contig12442.2.1|Name=mRNA_P-wetherbeei_contig12442.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MLAAPVLPPYHHQFHFAPMAAQQSDFGVAAAAYPMQTMYPVAPIATPHGF
SNGNGRAVPLPPAAMPVAASGGDGSINGCSGGGGGRSGGGGCSGGVGGVG
SGGGSGGVVARRSLEPLHVVPGSGHGSAGRQTTRATNSSPNAATRAKTEA
AAAATAAGGSAAPAPAPLRARGHRTRQAARADGKGA*
back to top

mRNA from alignment at P-wetherbeei_contig12442:1073..1972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12442.2.1 ID=mRNA_P-wetherbeei_contig12442.2.1|Name=mRNA_P-wetherbeei_contig12442.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig12442:1073..1972- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGTACCAGCGCGCCTCGATGCTGGCCGCGCCGGTGCTCCCACCCTA
CCACCACCAATTCCACTTCGCTCCGATGGCGGCGCAGCAGAGCGACTTCG
GGGTGGCGGCGGCGGCATATCCGATGCAGACAATGTATCCCGTTGCGCCC
ATTGCGACGCCCCACGGCTTTAGCAACGGCAATGGTCGGGCTGTGCCGCT
GCCGCCCGCAGCAATGCCGGTTGCCGCGAGCGGCGGCGACGGCAGCATCA
ACGGCTGCAGTGGCGGCGGCGGTGGTCGCAGCGGAGGCGGCGGTTGCAGT
GGCGGTGTTGGCGGCGTTGGCAGCGGCGGAGGAAGCGGCGGCGTAGTCGC
ACGACGTTCACTCGAGCCATTACATGTCGTCCCCGGCTCCGGGCACGGCA
GCGCAGGCAGGCAGACAACGAGGGCTACGAATAGCAGTCCGAACGCGGCT
ACGCGAGCAAAGACAGAAGCAGCGGCGGCGGCGACGGCGGCGGGGGGCAG
TGCGGCGCCCGCGCCGGCGCCTTTGCGCGCTCGAGGGCACAGGACTCGGC
AGGCAGCCCGCGCAGACGGAAAGGGTGCATGAGAATCGGAATCGAAGTAG
TTGCGTCAAATTTGTTGAAAACAGGGATTGTCTCGCGGGGGGGCACAGCG
GCACCCTTGGGCGCGGCGGCATTGGCTTTGCCGGCGTTAGGAGTGAATTG
AGGCGTTGCAAAGCAAAGCAGCAGCAATCCCGGCTATGGGATAAGGATGC
TTGCTTTGTGACCAGCTCCCTCTTGGGTCGGGGGCGATACCAGCGTTCTC
CTCCAGTGCTGACAGTAGACGGCAAATACCTTGGAGGTGCGCCGGCTCAG
AAGCTTAACAATACACACCAGAAAGATAAGAGGAAATGACAATTTTACTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12442:1073..1972-

>mRNA_P-wetherbeei_contig12442.2.1 ID=mRNA_P-wetherbeei_contig12442.2.1|Name=mRNA_P-wetherbeei_contig12442.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig12442:1073..1972- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCCGCGCCGGTGCTCCCACCCTACCACCACCAATTCCACTTCGC
TCCGATGGCGGCGCAGCAGAGCGACTTCGGGGTGGCGGCGGCGGCATATC
CGATGCAGACAATGTATCCCGTTGCGCCCATTGCGACGCCCCACGGCTTT
AGCAACGGCAATGGTCGGGCTGTGCCGCTGCCGCCCGCAGCAATGCCGGT
TGCCGCGAGCGGCGGCGACGGCAGCATCAACGGCTGCAGTGGCGGCGGCG
GTGGTCGCAGCGGAGGCGGCGGTTGCAGTGGCGGTGTTGGCGGCGTTGGC
AGCGGCGGAGGAAGCGGCGGCGTAGTCGCACGACGTTCACTCGAGCCATT
ACATGTCGTCCCCGGCTCCGGGCACGGCAGCGCAGGCAGGCAGACAACGA
GGGCTACGAATAGCAGTCCGAACGCGGCTACGCGAGCAAAGACAGAAGCA
GCGGCGGCGGCGACGGCGGCGGGGGGCAGTGCGGCGCCCGCGCCGGCGCC
TTTGCGCGCTCGAGGGCACAGGACTCGGCAGGCAGCCCGCGCAGACGGAA
AGGGTGCATGA
back to top