mRNA_P-wetherbeei_contig5445.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5445.2.1
Unique NamemRNA_P-wetherbeei_contig5445.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5445.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5445contigP-wetherbeei_contig5445:1116..2677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1510
Hectar predicted targeting categoryother localisation
Exons2
Cds size1200
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.7042644-UTR-P-wetherbeei_contig5445:1115..14171683186813.7042644-UTR-P-wetherbeei_contig5445:1115..1417Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5445 1116..1417 -
1683186813.7515328-UTR-P-wetherbeei_contig5445:2669..26771683186813.7515328-UTR-P-wetherbeei_contig5445:2669..2677Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5445 2670..2677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.7164657-CDS-P-wetherbeei_contig5445:1417..14911683186813.7164657-CDS-P-wetherbeei_contig5445:1417..1491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5445 1418..1491 -
1683186813.7304635-CDS-P-wetherbeei_contig5445:1543..26691683186813.7304635-CDS-P-wetherbeei_contig5445:1543..2669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5445 1544..2669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5445.2.1prot_P-wetherbeei_contig5445.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5445 1418..2669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5445.2.1

>prot_P-wetherbeei_contig5445.2.1 ID=prot_P-wetherbeei_contig5445.2.1|Name=mRNA_P-wetherbeei_contig5445.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=400bp
MELVAARTATTGAAADAAAGAAAEAAALRRRLVAMENRAAALEVLLFTAV
DVGPTEFGNRAAASSGGGGSGGRGSGNGNGAYGSGGSGGDSAGRRRSSVV
DDAAAAARDGRRGSGLAAVAAAAREWQRGSAAGERSAVRTEASPRWPSSS
VEQRRGSATSTAGSLSPPSVFATGRGTSALPAAAAAKSAAVREVGMRRGS
ASPSPASSPSPADRRTERPAVLRRPRSPFDDNYDEYAAAAAPQPTREAEG
AWEGEQSAQQQKGKQLANAGGSFHGSIAAIAAPSSVSPLQPQDSDALTCT
AAAAANVVVWLPNERASQDGGSGGGSGSSGSGGQAAAAFVAVSTGAADAT
AASIVAASLQDRLWRTNGSAVADGGAVRLGMLQAGEAAPTPRRRRRPHR*
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mRNA from alignment at P-wetherbeei_contig5445:1116..2677-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5445.2.1 ID=mRNA_P-wetherbeei_contig5445.2.1|Name=mRNA_P-wetherbeei_contig5445.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1562bp|location=Sequence derived from alignment at P-wetherbeei_contig5445:1116..2677- (Phaeothamnion wetherbeei SAG_119_79)
CCGCGGAGATGGAGCTGGTGGCAGCGCGAACGGCGACAACGGGCGCGGCG
GCCGATGCGGCGGCGGGGGCGGCGGCCGAGGCAGCGGCTCTCCGCAGGCG
GCTTGTGGCAATGGAGAACCGGGCGGCGGCGCTAGAGGTGCTACTCTTTA
CGGCGGTCGACGTCGGGCCGACCGAGTTCGGGAACAGAGCTGCCGCTAGC
TCCGGCGGCGGCGGCAGCGGCGGCCGCGGCAGCGGTAACGGAAACGGAGC
TTACGGCAGCGGTGGCAGCGGTGGTGACAGTGCCGGGAGGCGTCGCAGTT
CGGTCGTCGACGACGCCGCTGCGGCTGCTCGCGATGGGCGGCGCGGTAGC
GGACTCGCCGCAGTTGCAGCGGCAGCACGGGAGTGGCAGCGCGGCAGCGC
CGCTGGCGAAAGATCTGCGGTAAGAACGGAGGCGTCGCCGAGATGGCCGT
CGTCCTCCGTGGAGCAACGGCGGGGCTCGGCGACGAGCACGGCGGGGTCC
CTGTCGCCGCCATCGGTTTTTGCGACCGGTAGAGGCACTTCGGCCTTACC
AGCAGCGGCGGCGGCTAAAAGTGCAGCCGTGCGCGAGGTGGGGATGCGTC
GCGGCAGCGCATCGCCGTCTCCGGCGTCGTCCCCGTCGCCAGCGGACCGA
CGAACCGAAAGGCCGGCTGTGTTGCGGAGGCCGAGGTCGCCGTTCGATGA
CAATTACGATGAATACGCGGCGGCCGCCGCGCCACAGCCGACGAGAGAGG
CCGAGGGAGCGTGGGAGGGAGAACAGTCCGCTCAGCAACAGAAAGGAAAA
CAACTTGCTAACGCCGGCGGCAGCTTTCACGGCAGCATCGCCGCCATCGC
TGCGCCATCATCTGTGTCTCCGTTACAACCCCAGGATTCTGATGCGTTGA
CCTGTACTGCGGCAGCGGCAGCAAATGTTGTCGTGTGGTTGCCTAACGAG
CGAGCGAGCCAAGACGGCGGTAGCGGTGGCGGAAGCGGCAGCAGTGGCAG
TGGAGGCCAGGCGGCAGCTGCCTTCGTTGCCGTTTCCACCGGTGCCGCGG
ACGCCACCGCCGCATCCATCGTCGCGGCTTCCCTGCAGGATCGGCTTTGG
CGCACAAACGGCAGCGCCGTGGCTGACGGCGGCGGCGGCGATGCCGCCGA
CCCCAGCACGCCCACCATCTTGCTGCCCCGCTGCAGCAGTCCGCCTTGGA
ATGCTCCAGGCCGGCGAGGCAGCACCGACTCCTCGTCGTCGTCGTCGTCC
TCATCGGTGACGGCGGCAGCAGCAGCGGCAGCGACATCGGCAGTAACGGC
GCCGTCGGCAGCAGCAGTGGCGTCGGCTCGACCGACATCATCAGCCCGCG
CACCACCTACAGCGGTAGCTTCGGCGGTGGCGACAGCAGCAACGGCAGTA
GCGGTGCCTGCGGCAGCAACCCCATTAGGAACGCGGCCGTCAACCTCCCG
TTCACTACCGCCGCCGCCAGGCGCCGGGCATACAGGGCTGCGGCAGGCCA
GCGGCGCCCTCAACCCGTGGCAGCGGAGGGAGATCTTTGCGGCGCGTCTG
ATGCAAGGAGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5445:1116..2677-

>mRNA_P-wetherbeei_contig5445.2.1 ID=mRNA_P-wetherbeei_contig5445.2.1|Name=mRNA_P-wetherbeei_contig5445.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1200bp|location=Sequence derived from alignment at P-wetherbeei_contig5445:1116..2677- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGGTGGCAGCGCGAACGGCGACAACGGGCGCGGCGGCCGATGC
GGCGGCGGGGGCGGCGGCCGAGGCAGCGGCTCTCCGCAGGCGGCTTGTGG
CAATGGAGAACCGGGCGGCGGCGCTAGAGGTGCTACTCTTTACGGCGGTC
GACGTCGGGCCGACCGAGTTCGGGAACAGAGCTGCCGCTAGCTCCGGCGG
CGGCGGCAGCGGCGGCCGCGGCAGCGGTAACGGAAACGGAGCTTACGGCA
GCGGTGGCAGCGGTGGTGACAGTGCCGGGAGGCGTCGCAGTTCGGTCGTC
GACGACGCCGCTGCGGCTGCTCGCGATGGGCGGCGCGGTAGCGGACTCGC
CGCAGTTGCAGCGGCAGCACGGGAGTGGCAGCGCGGCAGCGCCGCTGGCG
AAAGATCTGCGGTAAGAACGGAGGCGTCGCCGAGATGGCCGTCGTCCTCC
GTGGAGCAACGGCGGGGCTCGGCGACGAGCACGGCGGGGTCCCTGTCGCC
GCCATCGGTTTTTGCGACCGGTAGAGGCACTTCGGCCTTACCAGCAGCGG
CGGCGGCTAAAAGTGCAGCCGTGCGCGAGGTGGGGATGCGTCGCGGCAGC
GCATCGCCGTCTCCGGCGTCGTCCCCGTCGCCAGCGGACCGACGAACCGA
AAGGCCGGCTGTGTTGCGGAGGCCGAGGTCGCCGTTCGATGACAATTACG
ATGAATACGCGGCGGCCGCCGCGCCACAGCCGACGAGAGAGGCCGAGGGA
GCGTGGGAGGGAGAACAGTCCGCTCAGCAACAGAAAGGAAAACAACTTGC
TAACGCCGGCGGCAGCTTTCACGGCAGCATCGCCGCCATCGCTGCGCCAT
CATCTGTGTCTCCGTTACAACCCCAGGATTCTGATGCGTTGACCTGTACT
GCGGCAGCGGCAGCAAATGTTGTCGTGTGGTTGCCTAACGAGCGAGCGAG
CCAAGACGGCGGTAGCGGTGGCGGAAGCGGCAGCAGTGGCAGTGGAGGCC
AGGCGGCAGCTGCCTTCGTTGCCGTTTCCACCGGTGCCGCGGACGCCACC
GCCGCATCCATCGTCGCGGCTTCCCTGCAGGATCGGCTTTGGCGCACAAA
CGGCAGCGCCGTGGCTGACGGCGGCGCAGTCCGCCTTGGAATGCTCCAGG
CCGGCGAGGCAGCACCGACTCCTCGTCGTCGTCGTCGTCCTCATCGGTGA
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