mRNA_P-wetherbeei_contig54440.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54440.1.1
Unique NamemRNA_P-wetherbeei_contig54440.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A3D5DG07_9GAMM (Cell division protein FtsQ n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG07_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 3.460e-43
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1
Query:   55 WLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            +LA++L DP   PI+++ V+GEF HLT +H+Q  V  AVH GFF VDVT +R  + DE W+ DA V R+WPD + V+I EQ+ VARWG+Y LLN  ADIFVP    +P DLV  NG +G+E+E+L+RF
Sbjct:   42 FLAQQLFDPMTFPIKKIAVDGEFHHLTAKHMQTVVSNAVHGGFFDVDVTSVRAHILDEPWVSDATVRRVWPDMIRVSIREQVAVARWGEYALLNPVADIFVPEPSAIPDDLVAFNGPIGTEEEMLQRF 169          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A3M1DP19_9GAMM (Cell division protein FtsQ n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DP19_9GAMM)

HSP 1 Score: 135 bits (341), Expect = 8.930e-37
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 1
Query:   22 VMLLATLIGMVWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            V+ LA L G V   R L+DP  LPIR V V GEF+HL+   +++ V      GFFG+DV  IR++L DE W+R+ +V R+WPD L VT++EQ+PVARWG++ L+N+  ++F P    +P+ LV+L G  GSE+E+L R 
Sbjct:   29 VLSLALLTGAVQGWRWLTDPGTLPIREVRVLGEFRHLSPARMEQGVADRATGGFFGIDVEGIRKVLLDEPWVREVSVRRVWPDTLQVTVLEQVPVARWGEHALVNDAGELFRPDPATIPRRLVRLEGPRGSERELLARM 167          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A523NX98_9PROT (Cell division protein FtsQ n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NX98_9PROT)

HSP 1 Score: 135 bits (340), Expect = 1.060e-36
Identity = 64/128 (50.00%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   55 WLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            +L + +++PAA PI+++ VEGEF H+T+EHVQ  V+ AV  GFF V+V  +R  + DE W+ DA V R+WPD + V+I EQ  VARWG++ LLN  ADIFVP S      L  L+G +GSE E+L R+
Sbjct:   44 YLTQWITNPAAFPIKKIAVEGEFNHMTSEHVQAVVLNAVDGGFFNVNVAAVRSRILDEPWVLDAAVRRVWPDTIRVSIHEQTAVARWGEHALLNRFADIFVPESSPKSSRLAVLDGPIGSESEMLSRY 171          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A836X7A3_9GAMM (Cell division protein FtsQ n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836X7A3_9GAMM)

HSP 1 Score: 122 bits (307), Expect = 7.610e-32
Identity = 59/130 (45.38%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   49 MVWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            +VW    LS+P  LPI++V VEG+F HL+   +Q  V   V  GFF +DV  +R  L +E W+ +  V R+WPD L V ++EQIPV RW D GLLN   + F P    +PQ+L  L+G +G+E  VL RF
Sbjct:   40 LVWGGMFLSNPDTLPIKQVRVEGDFTHLSPIDLQLLVTDKVRGGFFNLDVDAVRFALLNEPWVSEVTVKRIWPDALRVIVIEQIPVVRWNDSGLLNSSGEYFSPELSTIPQELPLLSGPIGAEVNVLNRF 169          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A661BM65_9GAMM (Cell division protein FtsQ n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BM65_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 5.610e-31
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   70 LSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            L+D  A PIR V + GEF+HL    +Q+++ GA+ A  F VDV  +R   +   W+RDA+V R+WPD LHV +VE++ VARWG+ GLL E   +F+P  +    DLVQL G  GS++EVL R+
Sbjct:   24 LADLQARPIRAVRIAGEFQHLARPALQQSISGALSARVFSVDVDAVRDAARRLPWVRDASVRRVWPDSLHVAVVERVAVARWGERGLLEEDGALFIPERQTALNDLVQLRGPDGSQREVLSRY 146          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A1G0G9M6_9GAMM (Cell division protein FtsQ n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G9M6_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 1.340e-30
Identity = 59/140 (42.14%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   19 LVMLLATLIGMVWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            LV+ +  ++ +VW A  LS+PA LPI++V +EGEF  L  + ++  V   V  GFF ++V  +R +L    W+++  V R+WPDGL V++ EQ+ VARWG  GLLN   + F P  E  P +L +L G  G+E  VL RF
Sbjct:   32 LVLTITCMVLLVWGAYLLSNPATLPIKQVRIEGEFFRLAPDRLKIMVTDKVRGGFFNLNVDTVRNVLLANPWVKEVTVQRVWPDGLRVSVSEQVAVARWGQDGLLNPAGEYFAPERETFPDELPELYGPRGTEVLVLNRF 171          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A849MFW0_9PROT (Cell division protein FtsQ n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MFW0_9PROT)

HSP 1 Score: 118 bits (296), Expect = 3.350e-30
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   52 VWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            VW    LS+   LPI++V +EG+F +L+   +Q  V   V  GFF +DV  +R  L DE W+++  V R+WPD L V ++EQIPV RW + GLLN  A+ F P    +P+DL  L G  G+E  +LERF
Sbjct:   41 VWAGMYLSNSDTLPIKQVRIEGDFTNLSPIDLQLLVTDKVRGGFFNLDVDAVRLALLDEPWVKEVTVKRIWPDALRVIVIEQIPVVRWKESGLLNAGAEYFAPEVASIPKDLPLLAGPAGTEAVLLERF 169          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A5Q0EJ01_9GAMM (Cell division protein FtsQ n=1 Tax=gamma proteobacterium SS-5 TaxID=947516 RepID=A0A5Q0EJ01_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 2.270e-29
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   13 VFLVMLLATLIGMVWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            V L ++LA L+G+ WL    SDP+  P+R   +EG+ +HL    +++AV  ++ AGFF VDV +++R  +   W+   +V R+WPD LH+ + EQ P+ARWG++ L+N R  +F P    +PQ L  L+G  GS  E+++R+
Sbjct:   27 VSLFLVLALLLGVRWL----SDPSVSPLRLARIEGDLRHLKRADLEQAVAASIRAGFFTVDVQEVKRAAEALPWVERVSVRRVWPDTLHLWVQEQQPLARWGEHALVNPRGQVFRPEPASIPQRLPLLHGPEGSAAELIQRY 164          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A1I4RB30_ECTMO (Cell division protein FtsQ n=4 Tax=Ectothiorhodospira mobilis TaxID=195064 RepID=A0A1I4RB30_ECTMO)

HSP 1 Score: 114 bits (285), Expect = 1.790e-28
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   28 LLATLIGMVW-LARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            LL  L G VW L   L     LP+ RV VEGE +HL  E VQ  V   + AGFF +D+  +RR L+   WIR+A+V R+WPDG+ + + EQ+PVARWGD  +LN+  + F P +  LP  L  L G  G E+ ++ER 
Sbjct:   36 LLVALAGTVWTLTGYLDRVDTLPVERVTVEGELRHLPRETVQEVVSAHLPAGFFTLDLAAVRRDLEALPWIRNASVERVWPDGVRLRVDEQVPVARWGDAAVLNQYGEPFRPGAGTLPPGLPALEGPPGRERVLMERL 173          
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Match: A0A2E0PVC7_9GAMM (Cell division protein FtsQ n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0PVC7_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 2.420e-28
Identity = 57/145 (39.31%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    4 TTVVFLVMLLATLIGMVWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVHAGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDYGLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF 438
            +++ FL+ +L  ++G++ L     +P  LPI++V +EG+F  L+   ++  V+  V  GFF +DV  +R  L DE W+ +  V R+WPD L VT++EQIPV RW + GLLN   + F P  E +P+ L  L+G  GSEQ +L ++
Sbjct:   29 SSIFFLIFMLVIMVGVMILL----NPGILPIKQVRIEGDFTRLSPVDLKLLVIDKVRGGFFNLDVDAVRFALLDEPWVSEVIVKRIWPDLLRVTVMEQIPVVRWANSGLLNMAGEYFSPEFETIPKWLPMLSGPAGSEQSLLNKY 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54440.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DG07_9GAMM3.460e-4353.91Cell division protein FtsQ n=1 Tax=Gammaproteobact... [more]
A0A3M1DP19_9GAMM8.930e-3747.48Cell division protein FtsQ n=1 Tax=Gammaproteobact... [more]
A0A523NX98_9PROT1.060e-3650.00Cell division protein FtsQ n=1 Tax=Proteobacteria ... [more]
A0A836X7A3_9GAMM7.610e-3245.38Cell division protein FtsQ n=1 Tax=Thiotrichaceae ... [more]
A0A661BM65_9GAMM5.610e-3147.15Cell division protein FtsQ n=1 Tax=Gammaproteobact... [more]
A0A1G0G9M6_9GAMM1.340e-3042.14Cell division protein FtsQ n=1 Tax=Gammaproteobact... [more]
A0A849MFW0_9PROT3.350e-3044.19Cell division protein FtsQ n=1 Tax=Proteobacteria ... [more]
A0A5Q0EJ01_9GAMM2.270e-2939.44Cell division protein FtsQ n=1 Tax=gamma proteobac... [more]
A0A1I4RB30_ECTMO1.790e-2844.93Cell division protein FtsQ n=4 Tax=Ectothiorhodosp... [more]
A0A2E0PVC7_9GAMM2.420e-2839.31Cell division protein FtsQ n=1 Tax=Legionellales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54440contigP-wetherbeei_contig54440:93..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog472759.Nhal_0494
Preferred nameftsQ
PFAMsFtsQ,POTRA_1
Model size438
Max annot lvl135613|Chromatiales
KEGG koko:K03589
KEGG Pathwayko04112,map04112
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.83e-28
EggNOG OGsCOG1589@1|root,COG1589@2|Bacteria,1N0T7@1224|Proteobacteria,1S9FJ@1236|Gammaproteobacteria,1X2GI@135613|Chromatiales
DescriptionEssential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
Cds size414
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.527551-UTR-P-wetherbeei_contig54440:92..1161683186813.527551-UTR-P-wetherbeei_contig54440:92..116Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54440 93..116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.5394762-CDS-P-wetherbeei_contig54440:116..5301683186813.5394762-CDS-P-wetherbeei_contig54440:116..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54440 117..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54440.1.1prot_P-wetherbeei_contig54440.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54440 117..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54440.1.1

>prot_P-wetherbeei_contig54440.1.1 ID=prot_P-wetherbeei_contig54440.1.1|Name=mRNA_P-wetherbeei_contig54440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MLLATLIGMVWLARELSDPAALPIRRVMVEGEFKHLTTEHVQRAVVGAVH
AGFFGVDVTDIRRLLQDEAWIRDANVSRMWPDGLHVTIVEQIPVARWGDY
GLLNERADIFVPMSEDLPQDLVQLNGLLGSEQEVLERF
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mRNA from alignment at P-wetherbeei_contig54440:93..530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54440.1.1 ID=mRNA_P-wetherbeei_contig54440.1.1|Name=mRNA_P-wetherbeei_contig54440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig54440:93..530+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACCACCGTGGTGTTTCTGGTGATGCTGCTCGCGACCTTGATCGGCAT GGTCTGGCTCGCGCGTGAGTTGTCCGATCCGGCAGCCCTGCCGATCCGAC GTGTGATGGTGGAAGGCGAATTCAAGCACCTCACCACCGAGCATGTGCAG CGCGCGGTGGTCGGTGCGGTGCATGCAGGCTTTTTCGGCGTCGATGTCAC CGACATCCGCCGACTCTTGCAGGACGAGGCGTGGATACGCGACGCCAACG TCAGTCGCATGTGGCCCGATGGCCTGCACGTGACCATCGTCGAACAGATC CCCGTGGCGCGCTGGGGCGACTATGGCCTGTTGAACGAGCGCGCCGACAT CTTCGTGCCTATGTCCGAAGACTTGCCGCAGGACCTCGTGCAGCTCAATG GTCTGCTGGGTTCGGAGCAGGAGGTGCTTGAGCGTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54440:93..530+

>mRNA_P-wetherbeei_contig54440.1.1 ID=mRNA_P-wetherbeei_contig54440.1.1|Name=mRNA_P-wetherbeei_contig54440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig54440:93..530+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTCGCGACCTTGATCGGCATGGTCTGGCTCGCGCGTGAGTTGTC
CGATCCGGCAGCCCTGCCGATCCGACGTGTGATGGTGGAAGGCGAATTCA
AGCACCTCACCACCGAGCATGTGCAGCGCGCGGTGGTCGGTGCGGTGCAT
GCAGGCTTTTTCGGCGTCGATGTCACCGACATCCGCCGACTCTTGCAGGA
CGAGGCGTGGATACGCGACGCCAACGTCAGTCGCATGTGGCCCGATGGCC
TGCACGTGACCATCGTCGAACAGATCCCCGTGGCGCGCTGGGGCGACTAT
GGCCTGTTGAACGAGCGCGCCGACATCTTCGTGCCTATGTCCGAAGACTT
GCCGCAGGACCTCGTGCAGCTCAATGGTCTGCTGGGTTCGGAGCAGGAGG
TGCTTGAGCGTTTC
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