mRNA_P-wetherbeei_contig54418.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54418.1.1
Unique NamemRNA_P-wetherbeei_contig54418.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: A0A4P7R9Y3_9BURK (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Hydrogenophaga sp. PAMC20947 TaxID=2565558 RepID=A0A4P7R9Y3_9BURK)

HSP 1 Score: 282 bits (721), Expect = 2.170e-91
Identity = 135/173 (78.03%), Postives = 147/173 (84.97%), Query Frame = 1 
Query:   13 DVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            DVAIVGGGLAGVVALTYARRAGL+A+VLE+ G VGGLWRDLPAWQDIQIS  DW LGDLPL G+ QP ILANI AWVE+F LADGIRLN PV+ AR   SGWA+ TP G V+ARHLVAATG HN PV+P +AR  STVRE+HSSALREP  L GRDV+VVGGGASAFDLLELC
Sbjct:   17 DVAIVGGGLAGVVALTYARRAGLEAIVLERHGRVGGLWRDLPAWQDIQISTVDWALGDLPLQGATQPHILANIEAWVERFGLADGIRLNAPVQLARRDGSGWAMSTPHGVVHARHLVAATGVHNAPVIPQLARAASTVREFHSSALREPTMLTGRDVLVVGGGASAFDLLELC 189
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: UPI001F3E517F (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Hydrogenophaga sp. SL48 TaxID=2806347 RepID=UPI001F3E517F)

HSP 1 Score: 276 bits (706), Expect = 3.160e-89
Identity = 135/176 (76.70%), Postives = 146/176 (82.95%), Query Frame = 1 
Query:    4 NDLDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            N  DVAIVGGGLAGVVAL  AR+AGL AVVLE+QG VGGLWRDLPAWQDIQISAADWTLGDLPL G  QP ILANI AWV++FDLADGIRLNTPV  AR   +GWAL TP G V+ARHLVAATG HN PV+P  AR  STVRE+HSS LR+P  L GRDV+VVGGGASAFDLL+ C
Sbjct:    6 NRFDVAIVGGGLAGVVALACARKAGLAAVVLERQGRVGGLWRDLPAWQDIQISAADWTLGDLPLQGVTQPHILANIEAWVQRFDLADGIRLNTPVHGARQDGAGWALTTPAGEVHARHLVAATGAHNTPVIPACARTASTVREFHSSTLRDPGLLTGRDVLVVGGGASAFDLLDQC 181
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: UPI0010F4E5DF (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0010F4E5DF)

HSP 1 Score: 276 bits (705), Expect = 4.480e-89
Identity = 129/177 (72.88%), Postives = 150/177 (84.75%), Query Frame = 1 
Query:    1 NNDLDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            N+  DVAIVGGGLAG++AL YARRAGL+A+VLE+QG VGGLWRDLP+WQDIQIS  DW LGDLPL G+ QP ILANI AW+ +F LADG+RLN PV+RAR  DS W L TPQG V ARHL+AATG HN PVVP ++R+ STV+E+HSSALR+P+ L GRDV+VVGGGASAFDLLELC
Sbjct:    5 NSPFDVAIVGGGLAGILALAYARRAGLEAIVLERQGRVGGLWRDLPSWQDIQISPLDWALGDLPLDGATQPHILANIEAWLTRFSLADGVRLNAPVQRARFGDSAWELVTPQGAVRARHLIAATGAHNTPVVPRVSRLGSTVQEFHSSALRDPEMLAGRDVLVVGGGASAFDLLELC 181
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: A0A3A4RMN9_9BURK (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Comamonadaceae TaxID=80864 RepID=A0A3A4RMN9_9BURK)

HSP 1 Score: 275 bits (703), Expect = 8.970e-89
Identity = 134/173 (77.46%), Postives = 144/173 (83.24%), Query Frame = 1 
Query:   13 DVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            DVAIVGGGLAGVVAL YARRAGLDAVVLE+QG VGGLWRDLPAWQDIQIS ADW LG+LPL G+ QP ILANI AWVE F LADGIRLNTPV+ AR   +GW L TP G V+ARHLVAATG HN PV+P   R  STVRE+HSSALR+P  L GR V+VVGGGASAFDLLELC
Sbjct:    9 DVAIVGGGLAGVVALAYARRAGLDAVVLERQGRVGGLWRDLPAWQDIQISPADWQLGELPLQGATQPHILANIEAWVEHFGLADGIRLNTPVQSAREDAAGWELATPNGPVHARHLVAATGAHNTPVIPACPRTGSTVREFHSSALRDPSLLTGRSVLVVGGGASAFDLLELC 181
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: A0A1B3LV92_9BURK (Pyridine nucleotide-disulfide oxidoreductase family protein n=1 Tax=Hydrogenophaga sp. RAC07 TaxID=1842537 RepID=A0A1B3LV92_9BURK)

HSP 1 Score: 272 bits (696), Expect = 1.020e-87
Identity = 131/173 (75.72%), Postives = 144/173 (83.24%), Query Frame = 1 
Query:   13 DVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            DVAIVGGGLAGVVAL YARRAGLDAVVLE+QG VGGLWRDLPAWQDIQIS  DW LG+LPL G+ QP ILANI AWVE FDLADGI+LNTPV+ AR   +GW L TP+G V+ARHLVAATG HN P +PD  R  STVRE+HSSALR+P  L  R V+VVGGGASAFDLL+LC
Sbjct:    9 DVAIVGGGLAGVVALAYARRAGLDAVVLERQGRVGGLWRDLPAWQDIQISTVDWQLGELPLQGATQPHILANIEAWVEHFDLADGIQLNTPVQAAREDAAGWELVTPKGLVHARHLVAATGAHNTPAIPDCPRTGSTVREFHSSALRDPGLLTDRSVLVVGGGASAFDLLDLC 181
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: A0A351EVG7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EVG7_9ACTN)

HSP 1 Score: 265 bits (678), Expect = 7.130e-86
Identity = 126/173 (72.83%), Postives = 145/173 (83.82%), Query Frame = 1 
Query:   13 DVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            DVAIVGGG+AGVVAL  ARRAGL+A+VLE+Q  +GGLWRDLPAWQDIQISA DWTLGDLP+ G+ QP ILANI AWVEQFDLADGI ++TPV  AR   + W LDTP+GTV++RHL+AATG HN PV+P + R  STVRE+HSSAL  P  L GRDV+VVGGGASAFDLL+LC
Sbjct:   20 DVAIVGGGIAGVVALAAARRAGLEAIVLERQDRIGGLWRDLPAWQDIQISALDWTLGDLPIDGTTQPHILANIEAWVEQFDLADGIWVDTPVECARHAGTMWELDTPRGTVHSRHLIAATGAHNTPVIPALERTSSTVREFHSSALHGPQELVGRDVLVVGGGASAFDLLDLC 192
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: A0A2P8KBS3_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variovorax sp. WS11 TaxID=1105204 RepID=A0A2P8KBS3_9BURK)

HSP 1 Score: 262 bits (669), Expect = 1.170e-83
Identity = 125/174 (71.84%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:   10 LDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            LD+AIVGGG+AGV+ L YAR++ LDA++LEKQG VGGLWR LP WQDIQIS ADW LGDLPL G  QP ILANI AWVE+F LAD IRL+TPV RAR T + W +DTPQGT+ ARHLVAATGGHN P +P++ R ES VRE HSSALR+P  L GR+V+VVGGGASAFDLL+LC
Sbjct:    7 LDLAIVGGGVAGVIHLHYARQSDLDALLLEKQGGVGGLWRQLPQWQDIQISPADWALGDLPLGGPKQPHILANIEAWVERFGLADRIRLDTPVSRARYTGTCWEIDTPQGTMRARHLVAATGGHNTPAIPEVLRHESAVRELHSSALRDPAELTGREVLVVGGGASAFDLLDLC 180
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: A0A562ZN58_9BURK (Uncharacterized protein n=1 Tax=Caenimonas sp. HX-9-20 TaxID=2596921 RepID=A0A562ZN58_9BURK)

HSP 1 Score: 261 bits (668), Expect = 1.700e-83
Identity = 124/174 (71.26%), Postives = 145/174 (83.33%), Query Frame = 1 
Query:   10 LDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            LDVAIVGGG+ GV+AL YA+RAGLDA++ EKQ +VGGLWR LPAWQDIQIS  DW LGDLPL G+ QP+I+ANI AWVE+F LAD IRL+TPV +AR   +GW L+TPQG V ARHLVAA+G HN PVVP + RV+S VRE HSSAL +P  L+GRDV+VVGGGASAFDLL+LC
Sbjct:    8 LDVAIVGGGIGGVIALHYAQRAGLDALLFEKQSAVGGLWRQLPAWQDIQISPPDWALGDLPLAGALQPDIVANIEAWVERFGLADCIRLDTPVLQARQEGTGWVLETPQGVVRARHLVAASGAHNTPVVPPVERVQSQVRELHSSALHDPGELHGRDVLVVGGGASAFDLLDLC 181
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: UPI00199D89C0 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Ramlibacter sp. TaxID=1917967 RepID=UPI00199D89C0)

HSP 1 Score: 244 bits (624), Expect = 7.190e-77
Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 1 
Query:   10 LDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            LDVAI+G G+ GV+AL YARRAGL A + EKQ  VGGLWR+LPAWQDIQIS ADW LGDL L G  QP+ILANI+AWVEQF L + I L+TPV+RAR  D GWALDTP+GT  AR LVA +G HNRP VP + R    V E HSSALR+P  L  R VVVVGGGASAFDL++LC
Sbjct:    8 LDVAIIGAGIGGVIALFYARRAGLQAAIFEKQDGVGGLWRELPAWQDIQISPADWALGDLLLEGPMQPQILANIQAWVEQFGLDEAIHLSTPVQRAREADGGWALDTPKGTFRARALVAMSGAHNRPFVPPVKRRNPQVEELHSSALRDPALLANRAVVVVGGGASAFDLIDLC 181
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BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Match: UPI0017871C57 (NAD(P)-binding domain-containing protein n=1 Tax=Marinobacter halotolerans TaxID=1569211 RepID=UPI0017871C57)

HSP 1 Score: 234 bits (598), Expect = 5.520e-73
Identity = 111/175 (63.43%), Postives = 133/175 (76.00%), Query Frame = 1 
Query:    7 DLDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQDIQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRARATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSALREPDALNGRDVVVVGGGASAFDLLELC 531
            DLD+ IVGGG+ GV+ L YAR AGL+A++LE+   VGGLWRDLP+WQDIQ    DWTLG+LPL G  QP IL NI AWVE+FDLA  IRLN  V  AR  ++GW L T  G   AR L+AATGGHNRP +P + RV++TV EYHSSALR+P+ L G+ V VVGGGASA+DLL+LC
Sbjct:    4 DLDLIIVGGGIGGVICLKYARDAGLNALLLERGNRVGGLWRDLPSWQDIQFRKEDWTLGNLPLSGEDQPSILGNIEAWVERFDLAPYIRLNAAVTSARQGENGWRLTTDTGNHEARWLIAATGGHNRPRLPQVERVDATVTEYHSSALRDPELLRGKRVTVVGGGASAYDLLDLC 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54418.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P7R9Y3_9BURK2.170e-9178.03NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Hydrog... [more]
UPI001F3E517F3.160e-8976.70NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Hydrog... [more]
UPI0010F4E5DF4.480e-8972.88NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Hydrog... [more]
A0A3A4RMN9_9BURK8.970e-8977.46NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Comamo... [more]
A0A1B3LV92_9BURK1.020e-8775.72Pyridine nucleotide-disulfide oxidoreductase famil... [more]
A0A351EVG7_9ACTN7.130e-8672.83Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2P8KBS3_9BURK1.170e-8371.84NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variov... [more]
A0A562ZN58_9BURK1.700e-8371.26Uncharacterized protein n=1 Tax=Caenimonas sp. HX-... [more]
UPI00199D89C07.190e-7767.82NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Ramlib... [more]
UPI0017871C575.520e-7363.43NAD(P)-binding domain-containing protein n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54418contigP-wetherbeei_contig54418:1..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1048339.KB913029_gene2057
PFAMsPyr_redox_3
Model size531
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.21e-22
EggNOG OGsCOG2072@1|root,COG2072@2|Bacteria,2GKYU@201174|Actinobacteria,4EU78@85013|Frankiales
DescriptionFlavin-binding monooxygenase-like
Cds size531
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.2819684-CDS-P-wetherbeei_contig54418:0..5311683186813.2819684-CDS-P-wetherbeei_contig54418:0..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54418 1..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54418.1.1prot_P-wetherbeei_contig54418.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54418 1..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54418.1.1

>prot_P-wetherbeei_contig54418.1.1 ID=prot_P-wetherbeei_contig54418.1.1|Name=mRNA_P-wetherbeei_contig54418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
NNDLDVAIVGGGLAGVVALTYARRAGLDAVVLEKQGSVGGLWRDLPAWQD
IQISAADWTLGDLPLHGSAQPEILANIRAWVEQFDLADGIRLNTPVRRAR
ATDSGWALDTPQGTVNARHLVAATGGHNRPVVPDIARVESTVREYHSSAL
REPDALNGRDVVVVGGGASAFDLLELC
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mRNA from alignment at P-wetherbeei_contig54418:1..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54418.1.1 ID=mRNA_P-wetherbeei_contig54418.1.1|Name=mRNA_P-wetherbeei_contig54418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig54418:1..531+ (Phaeothamnion wetherbeei SAG_119_79)
AACAACGACCTTGATGTTGCCATCGTGGGAGGCGGCCTGGCGGGAGTCGT
CGCCCTCACCTACGCACGGCGTGCCGGCCTTGACGCTGTGGTGCTCGAGA
AGCAGGGCAGCGTGGGCGGGCTGTGGCGCGACCTGCCGGCATGGCAGGAT
ATCCAGATCAGCGCTGCGGACTGGACGCTTGGCGACCTGCCATTGCATGG
CTCGGCGCAACCGGAGATCCTTGCCAACATCAGGGCATGGGTCGAACAGT
TCGACCTTGCCGATGGCATCCGTCTCAACACCCCGGTGCGACGCGCCCGC
GCGACGGATTCCGGGTGGGCACTGGACACGCCGCAAGGGACCGTGAACGC
GCGGCATCTCGTGGCCGCTACAGGCGGCCACAACCGGCCGGTGGTTCCCG
ACATTGCACGAGTTGAAAGCACAGTTCGTGAATACCACTCGAGCGCGCTG
CGCGAGCCGGACGCGCTGAACGGCCGCGACGTCGTGGTTGTGGGGGGCGG
CGCATCCGCCTTCGACCTGCTGGAACTGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54418:1..531+

>mRNA_P-wetherbeei_contig54418.1.1 ID=mRNA_P-wetherbeei_contig54418.1.1|Name=mRNA_P-wetherbeei_contig54418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig54418:1..531+ (Phaeothamnion wetherbeei SAG_119_79)
AACAACGACCTTGATGTTGCCATCGTGGGAGGCGGCCTGGCGGGAGTCGT
CGCCCTCACCTACGCACGGCGTGCCGGCCTTGACGCTGTGGTGCTCGAGA
AGCAGGGCAGCGTGGGCGGGCTGTGGCGCGACCTGCCGGCATGGCAGGAT
ATCCAGATCAGCGCTGCGGACTGGACGCTTGGCGACCTGCCATTGCATGG
CTCGGCGCAACCGGAGATCCTTGCCAACATCAGGGCATGGGTCGAACAGT
TCGACCTTGCCGATGGCATCCGTCTCAACACCCCGGTGCGACGCGCCCGC
GCGACGGATTCCGGGTGGGCACTGGACACGCCGCAAGGGACCGTGAACGC
GCGGCATCTCGTGGCCGCTACAGGCGGCCACAACCGGCCGGTGGTTCCCG
ACATTGCACGAGTTGAAAGCACAGTTCGTGAATACCACTCGAGCGCGCTG
CGCGAGCCGGACGCGCTGAACGGCCGCGACGTCGTGGTTGTGGGGGGCGG
CGCATCCGCCTTCGACCTGCTGGAACTGTGC
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