mRNA_P-wetherbeei_contig544.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig544.1.1
Unique NamemRNA_P-wetherbeei_contig544.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: D7FYU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.250e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   10 PSRGHSLVMEAVMILLSPVRQPLQPPPPAAVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            PS+ H LVMEA++ILLSP        P +++ G+ W EAR +L  P  L   +  VD +++PP N+  L+AY+ H  WP
Sbjct:  903 PSQSHMLVMEALIILLSPETVFHNHIPLSSLRGVTWTEARHILGNPDKLCAAIARVDSFSIPPANLSTLQAYIGHDGWP 981          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: A0A329S669_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S669_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.260e-11
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    7 APSRGHSLVMEAVMILLSPVRQPLQPPPPA-AVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            APS    +VMEAV++LL+PV+    P     A + ++WR +RRLL  PA L  +++ VD+ T+PP N++ALE YL H  WP
Sbjct: 1116 APSPALVVVMEAVLVLLTPVKVYEGPSQSEIATSSVSWRLSRRLLAQPAFLRAKLQQVDVTTIPPVNLVALERYLRHSWWP 1196          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: A0A485LKR0_9STRA (Aste57867_22122 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKR0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.070e-10
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   10 PSRGHSLVMEAVMILLSPVRQPLQPPPPAAVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            P  G  LVMEAV+ILL+P++Q   P    + + + WR +RRLL  P +LAE+++++D+  +P  N M L+AY+ H  WP
Sbjct: 1038 PPVGLVLVMEAVLILLTPMQQYASPD--CSTSTVTWRLSRRLLATPHLLAEKLQAIDLPHIPINNTMVLKAYIEHCDWP 1114          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: D0NBL0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NBL0_PHYIT)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-10
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 ACAPSRGHSLVMEAVMILLSPVR---QPLQPPPPAAVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            A APS    +VMEAV++LL+P +    P Q       + ++WR +RRLL  PA L  +++ VD+ T+PP N++ALE YL H  WP
Sbjct:  790 APAPSPAFVVVMEAVIVLLTPGKIYEGPSQSD--VGTSSVSWRLSRRLLAQPAFLRAKLQQVDVTTIPPVNLLALERYLRHSLWP 872          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: A0A833SMC2_PHYIN (IQ calmodulin binding motif-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SMC2_PHYIN)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-10
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 ACAPSRGHSLVMEAVMILLSPVR---QPLQPPPPAAVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            A APS    +VMEAV++LL+P +    P Q       + ++WR +RRLL  PA L  +++ VD+ T+PP N++ALE YL H  WP
Sbjct: 1108 APAPSPAFVVVMEAVIVLLTPGKIYEGPSQSD--VGTSSVSWRLSRRLLAQPAFLRAKLQQVDVTTIPPVNLLALERYLRHSLWP 1190          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: W2R6E6_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R6E6_PHYPN)

HSP 1 Score: 64.7 bits (156), Expect = 2.750e-10
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    7 APSRGHSLVMEAVMILLSPVRQPLQPPPPA-AVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            +PS    +VMEAV++LL+P +    P     A + ++WR +RRLL  PA L  ++  VD+ T+PP N++ALE YL H  WP
Sbjct: 1108 SPSPALVVVMEAVIVLLTPGKVYEGPSQSEIATSSVSWRLSRRLLGQPAFLRSKLHHVDVTTIPPANLLALERYLRHSLWP 1188          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: A0A0W8BVJ0_PHYNI (PH domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BVJ0_PHYNI)

HSP 1 Score: 64.7 bits (156), Expect = 2.760e-10
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    7 APSRGHSLVMEAVMILLSPVRQPLQPPPPA-AVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            +PS    +VMEAV++LL+P +    P     A + ++WR +RRLL  PA L  ++  VD+ T+PP N++ALE YL H  WP
Sbjct: 2077 SPSPALVVVMEAVIVLLTPGKVYEGPSQSEIATSSVSWRLSRRLLGQPAFLRSKLHHVDVTTIPPANLLALERYLRHSLWP 2157          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: H3H2Q5_PHYRM (PH domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2Q5_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 3.770e-10
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    7 APSRGHSLVMEAVMILLSPVRQPLQPPPPA-AVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            AP+    +VMEAV++LL+P +    P     A + ++WR +RRLL  PA L  +++ VD+ T+PP N++ALE ++ HP WP
Sbjct: 2916 APNPALVVVMEAVIVLLTPGKVYEGPSQSEIATSSVSWRLSRRLLAQPAFLRAKLQQVDISTIPPVNLVALERFVRHPRWP 2996          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: A0A6G0XY69_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY69_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.560e-10
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   10 PSRGHSLVMEAVMILLSPVRQPLQPPPPAAVAGIAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            P  G  LVMEA++ILL+P ++   P   +A + + WR +RRLL AP + A+++ ++D+  +P  N M L+ Y+ H  WP
Sbjct: 1014 PHIGLVLVMEAILILLTPTQRYTSPE--SATSAVTWRLSRRLLAAPQLFADKLLALDLRQIPADNTMVLKEYIEHGEWP 1090          
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Match: A0A662WDJ4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDJ4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-9
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    7 APSRGHSLVMEAVMILLSPVRQPLQPPPPAAVAG----IAWREARRLLQAPAVLAERVKSVDMWTVPPGNVMALEAYLAHPAWP 246
            APS    +VMEAV++LL+P +    P   A  A     ++WR ARRLL  PA L  +++ VD  TVP  N+ ALE Y+  P WP
Sbjct: 1131 APSAALIVVMEAVIVLLTPSKSYEGPSCEATAAASTSAVSWRLARRLLAQPAFLLSKLQQVDPTTVPSSNLTALERYVRLPNWP 1214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig544.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FYU1_ECTSI2.250e-1141.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A329S669_9STRA2.260e-1145.68Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A485LKR0_9STRA1.070e-1043.04Aste57867_22122 protein n=1 Tax=Aphanomyces stella... [more]
D0NBL0_PHYIT1.470e-1043.53Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A833SMC2_PHYIN1.470e-1043.53IQ calmodulin binding motif-containing protein n=1... [more]
W2R6E6_PHYPN2.750e-1043.21Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
A0A0W8BVJ0_PHYNI2.760e-1043.21PH domain-containing protein n=1 Tax=Phytophthora ... [more]
H3H2Q5_PHYRM3.770e-1041.98PH domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A6G0XY69_9STRA9.560e-1039.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662WDJ4_9STRA2.430e-944.05Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig544contigP-wetherbeei_contig544:213..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYU1
PFAMsIQ
Model size246
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.68e-12
EggNOG OGs293JW@1|root,2RAGR@2759|Eukaryota
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size246
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.8135905-CDS-P-wetherbeei_contig544:212..2761683186812.8135905-CDS-P-wetherbeei_contig544:212..276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig544 213..276 +
1683186812.8227117-CDS-P-wetherbeei_contig544:375..5571683186812.8227117-CDS-P-wetherbeei_contig544:375..557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig544 376..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig544.1.1prot_P-wetherbeei_contig544.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig544 213..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig544.1.1

>prot_P-wetherbeei_contig544.1.1 ID=prot_P-wetherbeei_contig544.1.1|Name=mRNA_P-wetherbeei_contig544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
ACAPSRGHSLVMEAVMILLSPVRQPLQPPPPAAVAGIAWREARRLLQAPA
VLAERVKSVDMWTVPPGNVMALEAYLAHPAWP
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mRNA from alignment at P-wetherbeei_contig544:213..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig544.1.1 ID=mRNA_P-wetherbeei_contig544.1.1|Name=mRNA_P-wetherbeei_contig544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig544:213..557+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTGCGCGCCGTCGCGGGGCCACTCTCTCGTCATGGAGGCAGTGATGAT TCTGCTTTCTCCGGGTAATTCTTTCGCCCCGCCCACCAACGAGGAGGAGA GCGGCCGCGGCGGTGCACCATTGCGGCAGGCACTACCACAGCGCCGTAGC ATGTTTTCGGTAGTAAGGCAGCCGCTGCAGCCGCCCCCGCCGGCGGCGGT CGCCGGCATCGCATGGCGCGAGGCTCGCCGCCTGCTGCAGGCGCCAGCGG TCCTCGCCGAGCGCGTGAAGAGCGTCGATATGTGGACCGTGCCGCCTGGA AACGTCATGGCGCTGGAAGCATATCTAGCGCATCCTGCCTGGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig544:213..557+

>mRNA_P-wetherbeei_contig544.1.1 ID=mRNA_P-wetherbeei_contig544.1.1|Name=mRNA_P-wetherbeei_contig544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig544:213..557+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTGCGCGCCGTCGCGGGGCCACTCTCTCGTCATGGAGGCAGTGATGAT
TCTGCTTTCTCCGGTAAGGCAGCCGCTGCAGCCGCCCCCGCCGGCGGCGG
TCGCCGGCATCGCATGGCGCGAGGCTCGCCGCCTGCTGCAGGCGCCAGCG
GTCCTCGCCGAGCGCGTGAAGAGCGTCGATATGTGGACCGTGCCGCCTGG
AAACGTCATGGCGCTGGAAGCATATCTAGCGCATCCTGCCTGGCCG
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