mRNA_P-wetherbeei_contig54387.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54387.1.1
Unique NamemRNA_P-wetherbeei_contig54387.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.560e-27
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   10 MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            M FFSLFSI+LNILLI IILIRSPNEQSLQENL PFKLFESS+RAE SIDK +QILT  YF +AI YVI  YF
Sbjct:    1 MTFFSLFSILLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 7.120e-27
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            N    FS+ SI+LNILLISIILIRSPNEQSLQENL PFK FESS RAE SIDK IQILT FYFI+A+ Y+IQ YF
Sbjct:    2 NYTTIFSIISILLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.810e-25
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            NSM  F + SI+LNILLI IILIRSPNEQSLQENL PF+LFESS RAE SIDK IQ+LT  YF++A+ YVIQ YF
Sbjct:    2 NSMTLFGILSIMLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.380e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            N M  F + SI+LNILLI +IL+RSPNEQSLQENL PFKLFESS RAE SIDK IQ+LT  YF++A+ YVIQ YF
Sbjct:    2 NYMTIFGVLSILLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI)

HSP 1 Score: 92.8 bits (229), Expect = 3.240e-23
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            ++++ FS+ SIILN  L+ IIL+RSPNEQSLQENL PFKLFESS RAE SIDK IQILT  YF++A+ Y IQ YF
Sbjct:    2 SNVNIFSILSIILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.300e-23
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            N  D FSL SI  NILLI +IL+RSPNEQSLQENL P KLFESS +AE SIDK IQIL  FYF++A+ Y IQ YF
Sbjct:    2 NYKDIFSLLSITSNILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.190e-21
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   10 MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            M+ F + + ILNI+LI +IL+RSPNEQSLQENL PF LFESS RAE SID+ I+ LTF YF +A+ Y IQGYF
Sbjct:    4 MNIFGILTTILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.660e-20
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   10 MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGY 225
            M FFS+ SII+N  L+ IILIRSPNEQSLQENL PFK+FESS +AE SID  I+ILT  YF +A+ Y I+ Y
Sbjct:    1 MKFFSIISIIVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A1I9LVL0_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.980e-19
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            N M  F + SI+LNILLISIILIRSPNE SL+ENLTPF  F SS  AE SID  I +L  FYF++A+ ++IQG+F
Sbjct:    2 NDMMIFIIISIVLNILLISIILIRSPNEISLKENLTPFNFFASSSSAEKSIDNLIIVLITFYFLLALIHIIQGFF 76          
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.450e-18
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   16 FFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
            F S+ SI +NI+LI IILIRSPNEQSLQENL PFK FESS +AEI ID  IQIL   YF +A+ Y I+ YF
Sbjct:    6 FLSIISIGINIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6B7EUY5_9PHAE6.560e-2779.45Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
D1J765_ECTSI7.120e-2776.00Uncharacterized protein ycf47 n=2 Tax=Ectocarpus s... [more]
A0A344PF79_9PHAE4.810e-2573.33Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A5A4MI59_9PHAE1.380e-2470.67Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A0R6LUQ0_UNDPI3.240e-2368.00Probable protein-export membrane protein SecG n=23... [more]
A0A8F0F7T2_9PHAE9.300e-2369.33Probable protein-export membrane protein SecG n=2 ... [more]
A0A8F0F9M4_9PHAE2.190e-2165.75Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A141BSB1_9PHAE1.660e-2065.28Probable protein-export membrane protein SecG n=14... [more]
A0A1I9LVL0_9PHAE5.980e-1962.67Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A2R4QPS9_9PHAE3.450e-1866.20Hypothetical chloroplast protein ycf47 n=3 Tax=Fuc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54387contigP-wetherbeei_contig54387:11..241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size231
Hectar predicted targeting categorysignal peptide
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.7332222-CDS-P-wetherbeei_contig54387:10..2321683186812.7332222-CDS-P-wetherbeei_contig54387:10..232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54387 11..232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.7451794-UTR-P-wetherbeei_contig54387:232..2411683186812.7451794-UTR-P-wetherbeei_contig54387:232..241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54387 233..241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54387.1.1prot_P-wetherbeei_contig54387.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54387 11..232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54387.1.1

>prot_P-wetherbeei_contig54387.1.1 ID=prot_P-wetherbeei_contig54387.1.1|Name=mRNA_P-wetherbeei_contig54387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISID
KSIQILTFFYFIVAIGYVIQGYF*
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mRNA from alignment at P-wetherbeei_contig54387:11..241-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54387.1.1 ID=mRNA_P-wetherbeei_contig54387.1.1|Name=mRNA_P-wetherbeei_contig54387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig54387:11..241- (Phaeothamnion wetherbeei SAG_119_79)
ATCAATTCTATGGATTTTTTTAGTTTATTTTCGATAATACTTAATATCTT ATTAATTTCAATCATATTAATCAGGAGCCCAAATGAACAGAGTTTACAAG AAAATTTAACTCCATTCAAACTTTTTGAGAGTTCTAAAAGAGCGGAAATA TCAATTGACAAATCAATCCAAATATTAACTTTTTTCTATTTCATAGTAGC TATAGGTTATGTTATTCAAGGTTATTTTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54387:11..241-

>mRNA_P-wetherbeei_contig54387.1.1 ID=mRNA_P-wetherbeei_contig54387.1.1|Name=mRNA_P-wetherbeei_contig54387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig54387:11..241- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTTTTTAGTTTATTTTCGATAATACTTAATATCTTATTAATTTC
AATCATATTAATCAGGAGCCCAAATGAACAGAGTTTACAAGAAAATTTAA
CTCCATTCAAACTTTTTGAGAGTTCTAAAAGAGCGGAAATATCAATTGAC
AAATCAATCCAAATATTAACTTTTTTCTATTTCATAGTAGCTATAGGTTA
TGTTATTCAAGGTTATTTTTAA
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