mRNA_P-wetherbeei_contig54376.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54376.1.1
Unique NamemRNA_P-wetherbeei_contig54376.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: UPI001C3C33C3 (cation:proton antiporter n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C33C3)

HSP 1 Score: 129 bits (324), Expect = 2.500e-33
Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 ITPGIGAPGFYIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            I+PG+     +  GL F G+AVLVA++ALTHQ ERAFS ++ YLAMG +AA  +ALLD  WLHLVDDA VVE LSE AV+VALF TG+RLDR   LR WRST LLL + MPL
Sbjct:   14 ISPGLHLADAFALGLLFLGVAVLVAMVALTHQRERAFSPAIVYLAMGALAAGGIALLDVHWLHLVDDADVVEHLSEFAVIVALFATGMRLDRPLGLRRWRSTVLLLALVMPL 125          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: UPI001C3D30D0 (cation:proton antiporter n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D30D0)

HSP 1 Score: 120 bits (302), Expect = 2.980e-30
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 ITPGIGAPGFYIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMP 333
            I PG+     +  GL F G+AV++AI+ALTHQ  RAFS S+ YLA+G+V A+  A LD  WL LV+DA +VERL+E+ V+VALF TG+RLDR   LR WRST LLLGV MP
Sbjct:    8 IAPGLDLADEWALGLLFLGVAVMIAIVALTHQRSRAFSPSVIYLALGLVGALGTAALDVAWLDLVEDADIVERLAEITVIVALFATGMRLDRPVGLRGWRSTLLLLGVVMP 118          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7W0NKD0_9ACTN (Cation:proton antiporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0NKD0_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 2.140e-26
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    7 PGIGAPGFYIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            PG   P  Y  GL F G+A+  A+ AL+HQ +RAFSASL YL +GI  A+ V + D  W+  VDDAT+VERL+E AV+VALF TGL+LDR      W S   LL +AMPL
Sbjct:    9 PGFAVPDLYAVGLIFLGVALAAAVAALSHQHDRAFSASLIYLVLGIAVALVVGVFDLHWIDPVDDATIVERLAEFAVIVALFSTGLKLDRDLTWSGWSSVTRLLAIAMPL 118          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7V9PNT6_9ACTN (Cation:proton antiporter n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9PNT6_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.070e-24
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    4 TPGIGAPGFYIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            +PG      Y  GL FAGLAV  AI AL+HQ ERAFSASL YLA+G+VAA  + LL   W+  + D  ++ERLSELAVV+ALFGTGL LDR      W ++A LL VAMPL
Sbjct:   18 SPGFSFADPYAIGLVFAGLAVFAAIGALSHQHERAFSASLIYLALGVVAAWIIDLLGVGWIDPLRDYALIERLSELAVVIALFGTGLSLDRRLRTWSWGTSARLLLVAMPL 128          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7W0RXD7_9ACTN (Cation:proton antiporter n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W0RXD7_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 1.090e-24
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   22 PGF-----YIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            PGF     Y  GLAFAGLAV  A+ AL+HQ ERAFSASL YL +G+ AA  + +LD  W+  + DA +VE L+E AV+VALFGTGL++DR    R W S A LL + MPL
Sbjct:    7 PGFSFADPYAIGLAFAGLAVFAAVGALSHQRERAFSASLIYLGLGLAAATIIDILDVDWIDPLADAELVEHLAEFAVIVALFGTGLKIDRALDSRAWGSVARLLVIVMPL 116          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7J9YQX4_9ACTN (Sodium:proton antiporter n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7J9YQX4_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 3.110e-24
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   31 YIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            Y  GL F  +AV  AI AL+HQ ERAFSA++ YLA+GI AA+++ LLD  W+  +DDA  +E LSELAV++ALFGTGL+LDR    R W     LL +AMPL
Sbjct:   18 YAVGLLFCAVAVFAAIGALSHQRERAFSAAIIYLALGIGAALAIGLLDLDWIDPIDDAEPIEHLSELAVIIALFGTGLKLDRPLDRRSWSGVGRLLLIAMPL 119          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7W0TKF3_9ACTN (Cation:proton antiporter n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W0TKF3_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 2.150e-23
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   31 YIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            Y   L FAG+A+  AI AL+HQ ERAFSASL YL +G+ AAV + LL   W+  + DA+++E LSE AV+VALFGTGLRL+R    R W S   LLG+ MPL
Sbjct:   16 YAIALVFAGIALFAAIGALSHQRERAFSASLIYLGLGLAAAVIIELLGVQWVAPIRDASLIEHLSEFAVIVALFGTGLRLERALHPRGWGSVGRLLGIVMPL 117          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7W0LAX6_9ACTN (Cation:proton antiporter (Fragment) n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W0LAX6_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 6.800e-23
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   31 YIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            Y   L FAG+A+  AI AL+HQ ERAFSASL YL +G+  AV + LL   W+  + D +++E L+E AV+VALFGTGLRL+R    R W S A LLG+ MPL
Sbjct:   16 YAIALVFAGIALFAAIGALSHQRERAFSASLIYLGLGLTGAVIIELLGVQWVAPLRDTSLIEHLTEFAVIVALFGTGLRLERALHPRGWGSVARLLGIVMPL 117          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7W0KK95_9ACTN (Cation:proton antiporter n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W0KK95_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 8.290e-23
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   31 YIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            Y   L FAG+A+  AI AL+HQ ERAFSASL YLA+G+ AAV + LL   W+  + D +++E LSE AV+VALFGTG+RL+R    R W S A LLG+ MPL
Sbjct:   16 YAIALVFAGVALFAAIGALSHQRERAFSASLIYLALGLGAAVIIELLGVQWIAPLRDTSLIEHLSEFAVIVALFGTGVRLERALHPRGWGSVARLLGIVMPL 117          
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Match: A0A7V9HA84_9ACTN (Cation:proton antiporter n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9HA84_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.210e-21
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   22 PGFYIA-----GLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVAAVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWRSTALLLGVAMPL 336
            PGF  A     G+ F G+AV  A+ AL+HQ ERAFSASL YL +G+ AA +V +L   WL  + D +++E ++ELAV++ALF  GL+LDR    R W S A LLG+ MPL
Sbjct:   10 PGFSFADPWALGILFLGVAVFAAVGALSHQHERAFSASLIYLGLGVFAAAAVTVLGIGWLDPIKDVSLLEHVTELAVIIALFSAGLKLDRTLSWRAWGSVARLLGITMPL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54376.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C33C32.500e-3363.39cation:proton antiporter n=1 Tax=Miltoncostaea mar... [more]
UPI001C3D30D02.980e-3058.56cation:proton antiporter n=1 Tax=Miltoncostaea oce... [more]
A0A7W0NKD0_9ACTN2.140e-2653.64Cation:proton antiporter n=1 Tax=Actinomycetia bac... [more]
A0A7V9PNT6_9ACTN1.070e-2457.66Cation:proton antiporter n=1 Tax=Solirubrobacteral... [more]
A0A7W0RXD7_9ACTN1.090e-2455.45Cation:proton antiporter n=1 Tax=Solirubrobacteral... [more]
A0A7J9YQX4_9ACTN3.110e-2455.88Sodium:proton antiporter n=1 Tax=Solirubrobacteral... [more]
A0A7W0TKF3_9ACTN2.150e-2355.88Cation:proton antiporter n=1 Tax=Geodermatophilace... [more]
A0A7W0LAX6_9ACTN6.800e-2353.92Cation:proton antiporter (Fragment) n=1 Tax=Geoder... [more]
A0A7W0KK95_9ACTN8.290e-2355.88Cation:proton antiporter n=1 Tax=Geodermatophilace... [more]
A0A7V9HA84_9ACTN1.210e-2150.00Cation:proton antiporter n=1 Tax=Solirubrobacteral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54376contigP-wetherbeei_contig54376:196..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122939.ATUD01000003_gene3443
PFAMsNa_H_Exchanger
Model size336
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.58e-15
EggNOG OGsCOG0025@1|root,COG0025@2|Bacteria,2GKCK@201174|Actinobacteria,4CQMT@84995|Rubrobacteria
DescriptionSodium/hydrogen exchanger family
Cds size336
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.5311515-CDS-P-wetherbeei_contig54376:195..5311683186812.5311515-CDS-P-wetherbeei_contig54376:195..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54376 196..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54376.1.1prot_P-wetherbeei_contig54376.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54376 196..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54376.1.1

>prot_P-wetherbeei_contig54376.1.1 ID=prot_P-wetherbeei_contig54376.1.1|Name=mRNA_P-wetherbeei_contig54376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
ITPGIGAPGFYIAGLAFAGLAVLVAILALTHQGERAFSASLAYLAMGIVA
AVSVALLDAPWLHLVDDATVVERLSELAVVVALFGTGLRLDRHFILREWR
STALLLGVAMPL
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mRNA from alignment at P-wetherbeei_contig54376:196..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54376.1.1 ID=mRNA_P-wetherbeei_contig54376.1.1|Name=mRNA_P-wetherbeei_contig54376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig54376:196..531+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACGCCCGGCATCGGCGCGCCGGGCTTCTACATCGCAGGATTGGCGTT CGCCGGCCTGGCAGTGCTGGTGGCGATCCTCGCGCTGACCCACCAGGGCG AGCGGGCCTTCTCGGCGAGCCTCGCCTACCTGGCGATGGGCATCGTGGCC GCCGTCTCGGTGGCGCTGCTCGACGCCCCGTGGCTTCACCTGGTGGACGA TGCCACCGTCGTGGAGCGACTCAGCGAGCTGGCCGTGGTGGTGGCCCTCT TCGGCACCGGGCTGCGCCTGGACCGGCATTTCATCCTGCGTGAATGGCGC TCGACGGCGCTCCTGCTGGGGGTCGCGATGCCCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54376:196..531+

>mRNA_P-wetherbeei_contig54376.1.1 ID=mRNA_P-wetherbeei_contig54376.1.1|Name=mRNA_P-wetherbeei_contig54376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig54376:196..531+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACGCCCGGCATCGGCGCGCCGGGCTTCTACATCGCAGGATTGGCGTT
CGCCGGCCTGGCAGTGCTGGTGGCGATCCTCGCGCTGACCCACCAGGGCG
AGCGGGCCTTCTCGGCGAGCCTCGCCTACCTGGCGATGGGCATCGTGGCC
GCCGTCTCGGTGGCGCTGCTCGACGCCCCGTGGCTTCACCTGGTGGACGA
TGCCACCGTCGTGGAGCGACTCAGCGAGCTGGCCGTGGTGGTGGCCCTCT
TCGGCACCGGGCTGCGCCTGGACCGGCATTTCATCCTGCGTGAATGGCGC
TCGACGGCGCTCCTGCTGGGGGTCGCGATGCCCCTC
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