mRNA_P-wetherbeei_contig54368.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54368.1.1
Unique NamemRNA_P-wetherbeei_contig54368.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54368.1.1 vs. uniprot
Match: A0A838GI64_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GI64_9CHLR)

HSP 1 Score: 80.1 bits (196), Expect = 1.230e-17
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   10 RAYYAAYLEARSFCEAHLGFERSRKGSEHQEVPRQIGSVDPVLMVRLTFLRKSRNTADYDLDVSAETM 213
            RAYYAA+LEAR FCE  LG+ER + G EH  VPR + +VD  L V L FLR+ RN ADYDL  + ET+
Sbjct:   29 RAYYAAFLEARQFCEDRLGYERVKSGGEHVTVPRLMATVDAKLEVDLAFLRQLRNHADYDLHFAEETI 96
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BLAST of mRNA_P-wetherbeei_contig54368.1.1 vs. uniprot
Match: A0A7W0PQZ2_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PQZ2_9CHLR)

HSP 1 Score: 76.6 bits (187), Expect = 2.560e-16
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   10 RAYYAAYLEARSFCEAHLGFERSRKGSEHQEVPRQIGSVDPVLMVRLTFLRKSRNTADYDLDVSAETMVRVA 225
            RAYYAA+LEAR+FCE HLG+   + G EH E+P+ + ++D      L FLR+ RN ADYDL+VSA T+   A
Sbjct:   29 RAYYAAFLEARTFCETHLGYIVRKSGREHGEIPQVLTTLDWRSTDNLVFLRRLRNVADYDLNVSAVTIAEQA 100
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BLAST of mRNA_P-wetherbeei_contig54368.1.1 vs. uniprot
Match: A0A7W0KC50_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KC50_9CHLR)

HSP 1 Score: 74.3 bits (181), Expect = 2.230e-15
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   10 RAYYAAYLEARSFCEAHLGFERSRKGSEHQEVPRQIGSVDPVLMVRLTFLRKSRNTADYDLDVSAETM 213
            R YYA YLEAR++CE HLG+ R R   EH  +P  + +VD  +   L F+R  RNTADYD+D+S +T+
Sbjct:   28 RLYYAVYLEARAWCEDHLGYVRIRSAREHVNIPGLLRNVDAEVAASLVFMRDLRNTADYDMDLSPDTI 95
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BLAST of mRNA_P-wetherbeei_contig54368.1.1 vs. uniprot
Match: A0A7W0ST66_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0ST66_9CHLR)

HSP 1 Score: 60.8 bits (146), Expect = 2.010e-10
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   16 YYAAYLEARSFCEAHLGFERSRKGSEHQEVPRQIGSVDPVLMVRLTFLRKSRNTADYDLDVSAET 210
            YYAAY EAR++CE HL + R+R   EH +V R I + D      L FLR  RNTADYD++   ET
Sbjct:    2 YYAAYREARAWCEDHLEYIRNRYSREHADVARLINAHD----TDLAFLRAYRNTADYDMNPGLET 62
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54368.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A838GI64_9CHLR1.230e-1758.82Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0PQZ2_9CHLR2.560e-1652.78Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0KC50_9CHLR2.230e-1550.00Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0ST66_9CHLR2.010e-1050.77Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54368contigP-wetherbeei_contig54368:142..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size231
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.3811457-CDS-P-wetherbeei_contig54368:141..3721683186812.3811457-CDS-P-wetherbeei_contig54368:141..372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54368 142..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54368.1.1prot_P-wetherbeei_contig54368.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54368 142..372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54368.1.1

>prot_P-wetherbeei_contig54368.1.1 ID=prot_P-wetherbeei_contig54368.1.1|Name=mRNA_P-wetherbeei_contig54368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
SRERAYYAAYLEARSFCEAHLGFERSRKGSEHQEVPRQIGSVDPVLMVRL
TFLRKSRNTADYDLDVSAETMVRVATD
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mRNA from alignment at P-wetherbeei_contig54368:142..372-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54368.1.1 ID=mRNA_P-wetherbeei_contig54368.1.1|Name=mRNA_P-wetherbeei_contig54368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig54368:142..372- (Phaeothamnion wetherbeei SAG_119_79)
TCGCGTGAGAGGGCCTATTACGCGGCCTACCTCGAAGCACGCTCGTTCTG
TGAGGCGCATCTTGGGTTCGAGCGGTCGCGGAAAGGCAGCGAGCATCAGG
AGGTGCCACGGCAGATCGGGTCGGTCGATCCCGTCCTTATGGTGCGCCTG
ACCTTTCTGCGCAAGAGTCGCAATACGGCAGATTACGATCTCGACGTCTC
GGCGGAGACGATGGTGCGTGTGGCGACGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54368:142..372-

>mRNA_P-wetherbeei_contig54368.1.1 ID=mRNA_P-wetherbeei_contig54368.1.1|Name=mRNA_P-wetherbeei_contig54368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig54368:142..372- (Phaeothamnion wetherbeei SAG_119_79)
TCGCGTGAGAGGGCCTATTACGCGGCCTACCTCGAAGCACGCTCGTTCTG
TGAGGCGCATCTTGGGTTCGAGCGGTCGCGGAAAGGCAGCGAGCATCAGG
AGGTGCCACGGCAGATCGGGTCGGTCGATCCCGTCCTTATGGTGCGCCTG
ACCTTTCTGCGCAAGAGTCGCAATACGGCAGATTACGATCTCGACGTCTC
GGCGGAGACGATGGTGCGTGTGGCGACGGAT
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