mRNA_P-wetherbeei_contig54366.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54366.1.1
Unique NamemRNA_P-wetherbeei_contig54366.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: A0A7C4XV87_9HYPH (Glycosyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XV87_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 1.890e-51
Identity = 90/152 (59.21%), Postives = 118/152 (77.63%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARLL 456
            L LL++A+ MLRA+GI V LGVAG GDI   + RLAAL AEVINRW+++ EI PLLARYDA+AL ++EASQSGVAA AFG CMP +  P  G+ EQV++G+TG+LA+ ++A +FADA  RLA D  LY++++R LKE+A +RSM  F+  LL
Sbjct:   71 LSLLIEAMAMLRAQGIAVHLGVAGQGDISRYQARLAALGAEVINRWIEEEEIPPLLARYDAIALSHVEASQSGVAATAFGSCMPAIGTPVAGIAEQVVDGKTGLLARRLSARAFADAAARLALDPGLYQRMARHLKESAHERSMARFLDLLL 222          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: A0A6N0DUK8_9HYPH (Glycosyltransferase family 4 protein n=1 Tax=Methyloligella sp. GL2 TaxID=2742204 RepID=A0A6N0DUK8_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 3.770e-46
Identity = 81/153 (52.94%), Postives = 114/153 (74.51%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARLLG 459
            LPL +DA+E+LR +G+ + +G+AG+GD+   R RL  L AE+INRW+ D EI  +L+RYDAMA  ++EASQSGV   AFG  MPVVAMP GG+ EQV++G TGVL++ +T   FA+A++RLAT+  LY+ I+  L ETA++RSM  F+  ++G
Sbjct:  213 LPLFVDAMEILREQGVPIEVGLAGSGDLGPERTRLERLGAEIINRWIPDSEIHGILSRYDAMACSHMEASQSGVVCAAFGTAMPVVAMPVGGIAEQVVDGETGVLSRRMTPQGFAEAVKRLATEPGLYQHITTHLTETAENRSMERFLREIVG 365          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: A0A1E3W619_9HYPH (Glyco_trans_4-like_N domain-containing protein n=1 Tax=Methyloceanibacter methanicus TaxID=1774968 RepID=A0A1E3W619_9HYPH)

HSP 1 Score: 162 bits (410), Expect = 7.480e-46
Identity = 83/151 (54.97%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARL 453
            LPLL+DAVE LR  G+ V LGVAG+G + + R RL A+ A++ NRW+ D E+  + +R+DAMA  ++EASQSGV + AFG  +PVVAMP GG+ EQV++GRTG+LA+++TA +FADAIRRLAT+  LY  I+R L E A  RSM  F++++
Sbjct:  207 LPLLIDAVEALRQSGLEVDLGVAGSGALGEDRVRLEAMGADMTNRWIADSEVRDIFSRFDAMACSHVEASQSGVVSAAFGNGLPVVAMPIGGIAEQVVDGRTGLLARQITAPAFADAIRRLATEPGLYESIARTLIEEAPHRSMDRFLSQI 357          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: UPI00131F36D7 (glycosyltransferase family 4 protein n=1 Tax=Methyloceanibacter sp. wino2 TaxID=2170729 RepID=UPI00131F36D7)

HSP 1 Score: 151 bits (382), Expect = 8.940e-42
Identity = 75/151 (49.67%), Postives = 107/151 (70.86%), Query Frame = 1
Query:   10 LLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARLLGT 462
            L DA+E+L  +G+ + LG+AG+GD+   R RL AL AE+INRW+D+ E++ +L RYD MA P++EASQSGV A A G  MPVVAMP+GG+ EQ+++  TG+L +++TA + A+AI RLAT+  LY  IS  +   A DRSM  F+  +  +
Sbjct:  207 LTDAIEILHGQGMDIELGLAGSGDLGKERARLEALGAEIINRWIDESEVSGILDRYDVMASPHVEASQSGVVATALGHGMPVVAMPTGGITEQIVDSETGILTKDITAMALAEAINRLATEPDLYDTISSHIVARADDRSMTRFLEEIYAS 357          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: M4Z164_9BRAD (WffQ protein n=2 Tax=Bradyrhizobium oligotrophicum TaxID=44255 RepID=M4Z164_9BRAD)

HSP 1 Score: 143 bits (360), Expect = 5.970e-39
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIAR 450
            L LLLD+VE LR EG  V LGV G G + D R RLAAL AEVINRWL ++EIA +L+RY A+ L +IEASQSGVAA + G  +PV+A P GGL EQ+ +G  G+LA  V A + +DAI+R+  D  L+  I R ++ T  DRSM  F+ +
Sbjct:  135 LTLLLDSVEALRREGFQVELGVFGEGALGDNRRRLAALGAEVINRWLTEQEIAAILSRYHAVVLSHIEASQSGVAATSLGAGIPVIATPVGGLIEQIQDGVNGILAARVDAAALSDAIKRIVLDPNLFDAICRRIEATRADRSMARFLQK 284          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: A0A0Q6CSS6_9HYPH (Uncharacterized protein n=3 Tax=Aureimonas TaxID=414371 RepID=A0A0Q6CSS6_9HYPH)

HSP 1 Score: 134 bits (336), Expect = 1.400e-36
Identity = 71/148 (47.97%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFI 444
            LPL ++A E LR +G+ + +GV G GD+ D RERL  L+AE++NRWL + E+A  LA YD + + ++EASQSGV A AFG  MPVVA P G L EQV +G TG++A+    +S A+AI+R   D  LYR++S  +   +  RSM  F+
Sbjct:   47 LPLFVEAAERLRRDGMPIEIGVFGDGDLRDCRERLDQLNAEIVNRWLTEGEVAGALAAYDVVVVSHVEASQSGVVAAAFGAGMPVVATPVGALPEQVDQGITGLIAEAADGSSLANAIKRFWNDPSLYRKMSDEIARASDRRSMDAFL 194          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: UPI001BAC617B (glycosyltransferase family 4 protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BAC617B)

HSP 1 Score: 137 bits (344), Expect = 5.860e-36
Identity = 75/148 (50.68%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFI 444
            LPL LDA+++LRAEG+ V +GV G G + +   RLA++ AEVINRWL ++EI  +L RY A+ L +IEASQSGVAA AFG  +PVVA P+GGL EQV +G  GV+A  V A+   DA++RL  D  L+  + R +  +   RSM  F+
Sbjct:  215 LPLFLDAIDLLRAEGVPVSVGVFGEGALGESAPRLASMGAEVINRWLTEQEIGAILPRYHALVLSHIEASQSGVAATAFGAGLPVVATPAGGLLEQVQDGINGVIATHVGASELRDAVKRLLLDEELFDIVCRNIAASRGRRSMPRFV 362          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: UPI001FE8FEB5 (glycosyltransferase family 4 protein n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI001FE8FEB5)

HSP 1 Score: 134 bits (337), Expect = 7.460e-35
Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFI 444
            L L LD VE+LR EGI + +GV G G +     RLA L AEV+NRWL + EI  +L RY A+ L +IEASQSGVAA AFG  +PVVA P GGL +QV +G  G+LA  V A S ADA++R+  +  LY  +   LKET  +RSM  F+
Sbjct:  216 LALFLDTVELLRNEGIAIEVGVFGEGALGPNVARLAILGAEVVNRWLTEAEIGAMLKRYHAVVLSHIEASQSGVAATAFGAELPVVATPVGGLVDQVKDGVNGLLAARVDADSMADAVKRMIGNSQLYSGMCNYLKETKAERSMSRFV 363          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: UPI001998A428 (Glycosyltransferase family 4 protein n=1 Tax=Rhizobiaceae bacterium TaxID=1913961 RepID=UPI001998A428)

HSP 1 Score: 129 bits (323), Expect = 5.710e-33
Identity = 74/145 (51.03%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   19 AVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARL 453
            AVE+L A GI VRL + G GD++  R+RL AL A V+NRWL D EI   LA +DA+ L ++EASQSGVAA+A G  +P+VA P GGL EQV +G TGVLA        A AI RLA D  L R I   +      RSM  F+  L
Sbjct:  221 AVEILHARGIDVRLSIYGEGDVEPYRQRLGALGAIVVNRWLSDDEIDTALASHDALVLSHVEASQSGVAALALGSGLPIVATPVGGLVEQVTDGETGVLAAGTDPADIAFAIARLAADGTLRRHICSVIAARRAGRSMQAFVHAL 365          
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Match: UPI0019BB098B (glycosyltransferase n=1 Tax=Bosea sp. SSUT16 TaxID=2773451 RepID=UPI0019BB098B)

HSP 1 Score: 124 bits (312), Expect = 2.790e-31
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 LPLLLDAVEMLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARYDAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEVTATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARL 453
            L L +D +E+LR  G+ V  GV G GD+     RLAALDAEV NRWL D EI     RYD + + ++EASQSGV A AFG  +PVV  P GGL EQV     G++A E++  + A+A+ R+A ++ LY  +   +++   DRSM  F++ L
Sbjct:  227 LSLFVDMLEILRERGLSVEAGVFGEGDLGPEASRLAALDAEVANRWLSDGEIVSAFDRYDLVVVSHVEASQSGVIATAFGAGLPVVTTPVGGLPEQVNHNVDGLIAAELSGQALANAVERIALEKGLYDVLFAGVRKQLNDRSMQRFVSEL 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54366.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XV87_9HYPH1.890e-5159.21Glycosyltransferase n=1 Tax=Hyphomicrobiales bacte... [more]
A0A6N0DUK8_9HYPH3.770e-4652.94Glycosyltransferase family 4 protein n=1 Tax=Methy... [more]
A0A1E3W619_9HYPH7.480e-4654.97Glyco_trans_4-like_N domain-containing protein n=1... [more]
UPI00131F36D78.940e-4249.67glycosyltransferase family 4 protein n=1 Tax=Methy... [more]
M4Z164_9BRAD5.970e-3953.33WffQ protein n=2 Tax=Bradyrhizobium oligotrophicum... [more]
A0A0Q6CSS6_9HYPH1.400e-3647.97Uncharacterized protein n=3 Tax=Aureimonas TaxID=4... [more]
UPI001BAC617B5.860e-3650.68glycosyltransferase family 4 protein n=1 Tax=Brady... [more]
UPI001FE8FEB57.460e-3552.03glycosyltransferase family 4 protein n=1 Tax=Hypho... [more]
UPI001998A4285.710e-3351.03Glycosyltransferase family 4 protein n=1 Tax=Rhizo... [more]
UPI0019BB098B2.790e-3145.03glycosyltransferase n=1 Tax=Bosea sp. SSUT16 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54366contigP-wetherbeei_contig54366:1..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1245469.S58_08520
PFAMsGlyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
Model size465
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-35
EggNOG OGsCOG0438@1|root,COG0438@2|Bacteria,1R7HK@1224|Proteobacteria,2U0X1@28211|Alphaproteobacteria,3JXPY@41294|Bradyrhizobiaceae
DescriptionGlycosyl transferases group 1
Cds size438
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.331085-UTR-P-wetherbeei_contig54366:0..271683186812.331085-UTR-P-wetherbeei_contig54366:0..27Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54366 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.348861-CDS-P-wetherbeei_contig54366:27..4651683186812.348861-CDS-P-wetherbeei_contig54366:27..465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54366 28..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54366.1.1prot_P-wetherbeei_contig54366.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54366 28..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54366.1.1

>prot_P-wetherbeei_contig54366.1.1 ID=prot_P-wetherbeei_contig54366.1.1|Name=mRNA_P-wetherbeei_contig54366.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MLRAEGIHVRLGVAGAGDIDDMRERLAALDAEVINRWLDDREIAPLLARY
DAMALPYIEASQSGVAAVAFGGCMPVVAMPSGGLGEQVIEGRTGVLAQEV
TATSFADAIRRLATDRPLYRQISRCLKETAQDRSMHTFIARLLGT*
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mRNA from alignment at P-wetherbeei_contig54366:1..465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54366.1.1 ID=mRNA_P-wetherbeei_contig54366.1.1|Name=mRNA_P-wetherbeei_contig54366.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig54366:1..465+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGCTGCTGCTCGACGCCGTGGAAATGCTGCGCGCGGAGGGCATTCA TGTCCGTCTTGGGGTGGCTGGCGCAGGCGACATCGATGATATGCGCGAGC GTCTCGCGGCGCTCGATGCGGAGGTCATCAATCGCTGGCTTGACGACAGG GAAATCGCGCCGCTGCTCGCGCGTTACGATGCGATGGCGCTGCCGTATAT CGAGGCGAGCCAGTCCGGTGTTGCGGCGGTGGCGTTCGGCGGTTGCATGC CGGTGGTGGCGATGCCGTCCGGCGGGCTTGGCGAGCAGGTGATCGAGGGC AGGACCGGCGTGCTTGCGCAAGAGGTGACTGCGACATCCTTTGCCGACGC CATTCGCCGGCTTGCGACGGACCGGCCGCTCTATCGGCAGATTTCGCGAT GTCTGAAGGAGACGGCGCAGGATCGGTCGATGCACACGTTCATTGCAAGG TTGCTTGGGACATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54366:1..465+

>mRNA_P-wetherbeei_contig54366.1.1 ID=mRNA_P-wetherbeei_contig54366.1.1|Name=mRNA_P-wetherbeei_contig54366.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig54366:1..465+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGCGCGGAGGGCATTCATGTCCGTCTTGGGGTGGCTGGCGCAGG
CGACATCGATGATATGCGCGAGCGTCTCGCGGCGCTCGATGCGGAGGTCA
TCAATCGCTGGCTTGACGACAGGGAAATCGCGCCGCTGCTCGCGCGTTAC
GATGCGATGGCGCTGCCGTATATCGAGGCGAGCCAGTCCGGTGTTGCGGC
GGTGGCGTTCGGCGGTTGCATGCCGGTGGTGGCGATGCCGTCCGGCGGGC
TTGGCGAGCAGGTGATCGAGGGCAGGACCGGCGTGCTTGCGCAAGAGGTG
ACTGCGACATCCTTTGCCGACGCCATTCGCCGGCTTGCGACGGACCGGCC
GCTCTATCGGCAGATTTCGCGATGTCTGAAGGAGACGGCGCAGGATCGGT
CGATGCACACGTTCATTGCAAGGTTGCTTGGGACATAG
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