mRNA_P-wetherbeei_contig54352.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54352.1.1
Unique NamemRNA_P-wetherbeei_contig54352.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A835YLV9_9STRA (Citrate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV9_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.940e-42
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRGLTIPDCQ+KLP Y +GGEPTPE+L+WLLLTSEVPT+ Q D LTA+LHARSKLPAHIEPLIRSFPK MH MT F+AAV AMQ
Sbjct:   83 EGIRFRGLTIPDCQKKLPGYQKGGEPTPEALIWLLLTSEVPTKEQADMLTADLHARSKLPAHIEPLIRSFPKDMHPMTQFAAAVAAMQ 170
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: D8LKC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC6_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.060e-40
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRGLTIPDCQEKLP Y EGGEP PE+LLWLLLT EVPT+AQ+D+LTA+LH RS +P H+E +IR FPK MHAM+MF AA+ A+Q
Sbjct:   85 EGIRFRGLTIPDCQEKLPGYTEGGEPMPEALLWLLLTGEVPTKAQVDELTADLHKRSGIPKHVEEMIRQFPKDMHAMSMFGAALFALQ 172
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A6H5JX30_9PHAE (Citrate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX30_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.840e-38
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRGLTIPDCQEKLP Y EGGEP PE+LLWLLLT EVPT+AQ+D+LTA+LH RS +P H+E +IR FPK MHAM+MF AA+ A+Q
Sbjct:   85 EGIRFRGLTIPDCQEKLPGYTEGGEPMPEALLWLLLTGEVPTKAQVDELTADLHKRSGIPKHVEEMIRQFPKDMHAMSMFGAALFALQ 172
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A7S2FY07_9EUKA (Citrate synthase n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FY07_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 2.060e-37
Identity = 62/88 (70.45%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRG TIP+ QEKLP +  GGEPTPE+LLWLLLT +VPT+AQ D LTAELH+R++LPAH+EP+IR+FPKGMH MT FS+A+ A+Q
Sbjct:   57 EGIRFRGFTIPELQEKLPGFQPGGEPTPEALLWLLLTGDVPTKAQADALTAELHSRAQLPAHVEPMIRNFPKGMHPMTQFSSAILALQ 144
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A0M0JWK7_9EUKA (Citrate synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JWK7_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 3.310e-37
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRG TIP+ QEKLP Y  GGEPTPE+LLWLLLT EVPT+ Q D LTA+LHAR+KLPAH+EP+IR+FPKGMH MT  S+A+ A+Q
Sbjct:   66 EGIRFRGYTIPELQEKLPGYKTGGEPTPEALLWLLLTGEVPTKEQCDALTADLHARAKLPAHVEPMIRAFPKGMHPMTQLSSAILALQ 153
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A7S4FBK6_CHRCT (Citrate synthase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBK6_CHRCT)

HSP 1 Score: 129 bits (323), Expect = 2.180e-33
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYV--EGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRG TIP+ QEKLP Y    G EP PE L WLLLT ++PT+AQ+D LT ELHAR+KLPAH+EP+IRSFPKGMH MT  S+A+ A+Q
Sbjct:  101 EGIRFRGYTIPELQEKLPNYTGKAGDEPQPEGLFWLLLTGDIPTKAQVDALTQELHARAKLPAHVEPMIRSFPKGMHPMTQLSSAILALQ 190
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A7S0JIV8_9EUKA (Citrate synthase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIV8_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 1.500e-32
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRG TIP+ QEKLP    G EP PESLLWLLLT EVPT+AQ+D LTA+LH+RSKLP H+  +I +FPKGMH MT FS+A+ A Q
Sbjct:   97 EGIRFRGYTIPELQEKLPSATGGAEPLPESLLWLLLTGEVPTKAQVDSLTADLHSRSKLPDHVPAMIANFPKGMHPMTQFSSAILACQ 184
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A397CZP5_9STRA (Citrate synthase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A397CZP5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.130e-32
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAM 261
            +GIRFRG TIPD Q+KLP Y+EGGEP PE L+WLLLT E+PTR Q+D LT ELH+RSK+PAH++ ++   PKG H MT FS AV AM
Sbjct:  102 EGIRFRGHTIPDLQKKLPTYIEGGEPMPEGLIWLLLTGEIPTREQVDGLTKELHSRSKIPAHVKQMLCDLPKGTHPMTQFSIAVMAM 188
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A7S3V0B5_9STRA (Citrate synthase n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V0B5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.880e-31
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYV--EGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRG TIP+ Q+ LP     +G EP PE+LLWLLLT E+PTRAQ + LT ELH+R+KLPAH+EPLIRS PK MH MT FS AV AMQ
Sbjct:   89 EGIRFRGYTIPELQKALPSVTGKDGAEPGPEALLWLLLTGEIPTRAQSEALTEELHSRAKLPAHVEPLIRSLPKNMHPMTKFSTAVLAMQ 178
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BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Match: A0A067BY16_SAPPC (Citrate synthase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BY16_SAPPC)

HSP 1 Score: 122 bits (307), Expect = 3.300e-31
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLTAELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ 264
            +GIRFRG TIP+ Q+KLP  VEGGEP PE L+WLLLT E+P++AQ D LTAE HARSKLP H++ ++   PK MH MT FS A+ AMQ
Sbjct:   83 EGIRFRGYTIPELQKKLPTAVEGGEPLPEGLIWLLLTGEIPSKAQADSLTAEFHARSKLPDHVKAVLCDLPKNMHPMTQFSIAIMAMQ 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54352.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLV9_9STRA5.940e-4280.68Citrate synthase n=1 Tax=Tribonema minus TaxID=303... [more]
D8LKC6_ECTSI1.060e-4072.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX30_9PHAE3.840e-3872.73Citrate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/... [more]
A0A7S2FY07_9EUKA2.060e-3770.45Citrate synthase n=2 Tax=Haptolina brevifila TaxID... [more]
A0A0M0JWK7_9EUKA3.310e-3771.59Citrate synthase n=1 Tax=Chrysochromulina tobinii ... [more]
A0A7S4FBK6_CHRCT2.180e-3366.67Citrate synthase n=1 Tax=Chrysotila carterae TaxID... [more]
A0A7S0JIV8_9EUKA1.500e-3267.05Citrate synthase n=1 Tax=Calcidiscus leptoporus Ta... [more]
A0A397CZP5_9STRA2.130e-3265.52Citrate synthase n=5 Tax=Aphanomyces TaxID=100860 ... [more]
A0A7S3V0B5_9STRA1.880e-3166.67Citrate synthase n=2 Tax=Aplanochytrium stocchinoi... [more]
A0A067BY16_SAPPC3.300e-3163.64Citrate synthase n=4 Tax=Saprolegniaceae TaxID=476... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54352contigP-wetherbeei_contig54352:269..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKC6
Preferred nameCS
PFAMsCitrate_synt
Model size264
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00067
KEGG koko:K01647
KEGG ReactionR00351
KEGG Pathwayko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00740
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004108,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005975,GO:0006081,GO:0006082,GO:0006084,GO:0006091,GO:0006097,GO:0006099,GO:0006101,GO:0006107,GO:0006139,GO:0006163,GO:0006195,GO:0006520,GO:0006536,GO:0006537,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009109,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009403,GO:0009404,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0014823,GO:0015980,GO:0016042,GO:0016053,GO:0016054,GO:0016740,GO:0016746,GO:0016999,GO:0017001,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019637,GO:0019679,GO:0019693,GO:0019748,GO:0019752,GO:0030312,GO:0030554,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0035639,GO:0036094,GO:0036440,GO:0042221,GO:0042579,GO:0042737,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043385,GO:0043386,GO:0043436,GO:0043603,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044262,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045333,GO:0045460,GO:0045461,GO:0046356,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046487,GO:0046686,GO:0046700,GO:0046872,GO:0046912,GO:0046914,GO:0050440,GO:0050896,GO:0051186,GO:0051187,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072329,GO:0072350,GO:0072521,GO:0072523,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901376,GO:1901378,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607
Exons1
Evalue1.74e-41
EggNOG OGsCOG0372@1|root,KOG2617@2759|Eukaryota
EC2.3.3.1
Descriptioncitrate (Si)-synthase activity
Cds size264
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.134094-CDS-P-wetherbeei_contig54352:268..5321683186812.134094-CDS-P-wetherbeei_contig54352:268..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54352 269..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54352.1.1prot_P-wetherbeei_contig54352.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54352 269..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54352.1.1

>prot_P-wetherbeei_contig54352.1.1 ID=prot_P-wetherbeei_contig54352.1.1|Name=mRNA_P-wetherbeei_contig54352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
QGIRFRGLTIPDCQEKLPPYVEGGEPTPESLLWLLLTSEVPTRAQMDQLT
AELHARSKLPAHIEPLIRSFPKGMHAMTMFSAAVTAMQ
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mRNA from alignment at P-wetherbeei_contig54352:269..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54352.1.1 ID=mRNA_P-wetherbeei_contig54352.1.1|Name=mRNA_P-wetherbeei_contig54352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54352:269..532- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCATCCGATTCCGGGGCCTGACCATCCCGGACTGCCAGGAGAAGCT
GCCGCCATACGTCGAGGGCGGGGAGCCGACGCCGGAGTCGCTGTTGTGGC
TGCTCCTAACGAGCGAGGTGCCGACGCGGGCGCAGATGGACCAGCTGACG
GCGGAGCTGCACGCGCGGTCGAAGCTGCCGGCGCACATCGAGCCGCTGAT
CCGGTCGTTCCCCAAGGGGATGCATGCCATGACCATGTTCTCTGCCGCCG
TCACCGCCATGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54352:269..532-

>mRNA_P-wetherbeei_contig54352.1.1 ID=mRNA_P-wetherbeei_contig54352.1.1|Name=mRNA_P-wetherbeei_contig54352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54352:269..532- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCATCCGATTCCGGGGCCTGACCATCCCGGACTGCCAGGAGAAGCT
GCCGCCATACGTCGAGGGCGGGGAGCCGACGCCGGAGTCGCTGTTGTGGC
TGCTCCTAACGAGCGAGGTGCCGACGCGGGCGCAGATGGACCAGCTGACG
GCGGAGCTGCACGCGCGGTCGAAGCTGCCGGCGCACATCGAGCCGCTGAT
CCGGTCGTTCCCCAAGGGGATGCATGCCATGACCATGTTCTCTGCCGCCG
TCACCGCCATGCAG
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