mRNA_P-wetherbeei_contig54325.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54325.1.1
Unique NamemRNA_P-wetherbeei_contig54325.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A258JI92_9BRAD (Magnesium transporter MgtE n=1 Tax=Bradyrhizobium sp. 35-63-5 TaxID=1970326 RepID=A0A258JI92_9BRAD)

HSP 1 Score: 260 bits (665), Expect = 7.240e-84
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            VAPDW VG  IDYMR + +LPE+FYE+Y+VD D + LG V LD LLR +RPVP  +L+  ERRRV+A +DQE+VA+LF+RY+LVAAPVVD DDRLVGVIT DD+ DV+ EEAEEDI ALGGV  DEELSDSVW+IARGRFNWLLVNL TAFLASSVLGLFEG LQKMVALAVLAPIV
Sbjct:   62 VAPDWNVGRAIDYMRETEELPEQFYELYIVDEDGRFLGAVPLDRLLRAKRPVPVSELMIEERRRVKADEDQESVARLFQRYDLVAAPVVDSDDRLVGVITFDDVADVLVEEAEEDIKALGGVKADEELSDSVWTIARGRFNWLLVNLATAFLASSVLGLFEGSLQKMVALAVLAPIV 238
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: J6LIR1_9RHOB (Magnesium transporter MgtE n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J6LIR1_9RHOB)

HSP 1 Score: 263 bits (671), Expect = 1.730e-83
Identity = 135/177 (76.27%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V P WTVGH IDY+R + +LPERF+E+YVVDAD KLLG V LD LLR RRP    +L E ERRRVRA+DDQE VA+LFERYNL+A PVVD  DRLVGVIT DDI+DVI +EA++DI ALGGV  DEELSDSVW+IARGRFNWL+VNL TAFLASSVLGLFEG+LQKMVALAVLAPIV
Sbjct:  165 VPPSWTVGHTIDYLRETEELPERFFELYVVDADYKLLGAVPLDRLLRTRRPTHVDELTEAERRRVRATDDQEEVARLFERYNLIAVPVVDDSDRLVGVITVDDIVDVIEQEADQDIKALGGVGGDEELSDSVWTIARGRFNWLVVNLATAFLASSVLGLFEGQLQKMVALAVLAPIV 341
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A327KTQ0_9HYPH (Magnesium transporter MgtE n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KTQ0_9HYPH)

HSP 1 Score: 261 bits (666), Expect = 9.510e-83
Identity = 133/177 (75.14%), Postives = 152/177 (85.88%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V P WTVGH ID++R + +LPERF+E++VVDAD KLLG VALD LLR RRP     L++  RRRVRA+DD E VA++FERYNL+AAPVVD  DRLVGV+T DD++DVI EEAE+DI ALGGVT DEELSDSVW+IARGRFNWLLVNL TAFLASSVLGLFEGEL+KMVALAVLAPIV
Sbjct:  164 VPPSWTVGHTIDFLRENEELPERFFEIHVVDADYKLLGAVALDTLLRTRRPTLVADLMDAGRRRVRATDDLEEVARMFERYNLIAAPVVDDGDRLVGVVTVDDVVDVIEEEAEKDIKALGGVTGDEELSDSVWTIARGRFNWLLVNLATAFLASSVLGLFEGELEKMVALAVLAPIV 340
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A327KRN1_9HYPH (Magnesium transporter MgtE n=2 Tax=Rhodoplanes TaxID=29407 RepID=A0A327KRN1_9HYPH)

HSP 1 Score: 259 bits (663), Expect = 2.690e-82
Identity = 133/177 (75.14%), Postives = 152/177 (85.88%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V P W+VGH IDY+R + +LPERF+E+YVVD D +LLG VALD+LLR RRP    +L++  RRRVRA+ DQE VA+LFERYNL+A PVVD  DRLVGVIT DD++DVI EEAE+DI ALGGVT DEELSDSVW+IARGRFNWLLVNL TAFLAS+VLGLFEGELQKMVALAVLAPIV
Sbjct:  164 VPPSWSVGHTIDYLRDNDELPERFFEIYVVDGDYRLLGAVALDVLLRTRRPTRIEELMDAGRRRVRATADQEEVARLFERYNLIALPVVDDRDRLVGVITVDDVVDVIEEEAEKDIKALGGVTGDEELSDSVWTIARGRFNWLLVNLATAFLASAVLGLFEGELQKMVALAVLAPIV 340
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A6P1BS35_9BRAD (Magnesium transporter MgtE n=53 Tax=Proteobacteria TaxID=1224 RepID=A0A6P1BS35_9BRAD)

HSP 1 Score: 259 bits (663), Expect = 3.080e-82
Identity = 132/177 (74.58%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V PDW VG  IDYMR + DLPERFYE+YVVDAD+ LLG + LD LLR RRPVP   L++ +RRRV A +DQE VA++F +YNLVAAPVVD  DRLVGVIT DD++DVI EEA+ED+ ALGGVTH EELSD+VW+IARGRFNWLLVNL TAFLASSVLGLFEG+L+KMVALAVLAPIV
Sbjct:  169 VPPDWNVGQAIDYMRDTPDLPERFYEIYVVDADRHLLGAMPLDALLRARRPVPVKDLIDEDRRRVSALEDQEEVARMFGKYNLVAAPVVDTTDRLVGVITIDDVVDVIEEEADEDLKALGGVTHPEELSDTVWTIARGRFNWLLVNLATAFLASSVLGLFEGQLEKMVALAVLAPIV 345
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A327KBI0_9HYPH (Magnesium transporter MgtE n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327KBI0_9HYPH)

HSP 1 Score: 259 bits (661), Expect = 5.520e-82
Identity = 131/177 (74.01%), Postives = 150/177 (84.75%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V P WTVGH IDY+R + +LPERF+E+YVVDAD + LG VALD+LLR RRP    +L++  RRRVRA+ DQE VA+LFERYNL+A PVVD  DRL GV+T DD++DVI EEAE+DI ALGGV  DEELSDSVW+IARGRFNWLLVNL TAFLAS+VLGLFEGELQKMVALAVLAPIV
Sbjct:  165 VPPSWTVGHTIDYLRENEELPERFFEIYVVDADYRFLGAVALDVLLRTRRPTRVAELMDAGRRRVRATADQEEVARLFERYNLIALPVVDDQDRLAGVVTVDDVVDVIEEEAEKDIKALGGVAGDEELSDSVWTIARGRFNWLLVNLATAFLASAVLGLFEGELQKMVALAVLAPIV 341
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A537L922_9PROT (Magnesium transporter MgtE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L922_9PROT)

HSP 1 Score: 258 bits (660), Expect = 8.450e-82
Identity = 131/177 (74.01%), Postives = 150/177 (84.75%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V P WTVG  IDYMR + DLPERF+E+YVVD   K LG V LD L+R +RPVP  +L+EPER  VRA+DDQE VA+ FERYNLVAAPV+D +DR+VGV+T DDI+DVI +EAEEDI ALGGV   EELSDSVW+IA+GRFNWLL+NLGTAFLASSVLGLFEG+LQKMVALAVLAPIV
Sbjct:  168 VPPAWTVGQTIDYMRETEDLPERFFEIYVVDPAGKFLGAVPLDRLMRTKRPVPMSELMEPERHVVRATDDQEDVARRFERYNLVAAPVIDANDRMVGVMTFDDIVDVIEQEAEEDIKALGGVQAQEELSDSVWTIAKGRFNWLLINLGTAFLASSVLGLFEGQLQKMVALAVLAPIV 344
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A533JBZ1_9BRAD (Magnesium transporter MgtE n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533JBZ1_9BRAD)

HSP 1 Score: 258 bits (660), Expect = 8.680e-82
Identity = 131/177 (74.01%), Postives = 153/177 (86.44%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V PDWTVG  IDYMR ++DLPERFYE+Y VDAD++  G VALD+LLR RR VP  +LV+ +RRRV   DDQE VA++F +YNLVAAPVVD ++RLVGV+T DD++DVI EEA+ED+ ALGGVT DEELSDSVW+IARGRFNWLLVNL TAFLASSVLGLFEG+L+KMVALAVLAPIV
Sbjct:  169 VPPDWTVGQAIDYMRETSDLPERFYEIYAVDADKRWQGAVALDVLLRARRLVPLKELVDEDRRRVSVLDDQEEVARMFGKYNLVAAPVVDTENRLVGVVTIDDVVDVIEEEADEDLKALGGVTSDEELSDSVWTIARGRFNWLLVNLATAFLASSVLGLFEGQLEKMVALAVLAPIV 345
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A537UJD8_9PROT (Magnesium transporter MgtE (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UJD8_9PROT)

HSP 1 Score: 253 bits (647), Expect = 9.750e-81
Identity = 128/177 (72.32%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V PDWTVG  IDYMR ++DLP+RFYE+Y VD+++   G V LD+LLR+RR VP   LV+ +RRRV   DDQE VA++F +YNLVAAPVVD D+RLVGVIT DD++DVI EEA+ED+ ALGGVT DEELSD+VW+IARGRFNWLLVNL TAFLASSVLGLFEG+L+KMVALAVLAPIV
Sbjct:  169 VPPDWTVGQAIDYMRETSDLPDRFYEIYAVDSEKHWQGAVPLDVLLRSRRMVPLKDLVDEDRRRVSVLDDQEEVARMFGKYNLVAAPVVDTDNRLVGVITIDDVVDVIEEEADEDLRALGGVTSDEELSDNVWTIARGRFNWLLVNLATAFLASSVLGLFEGQLEKMVALAVLAPIV 345
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BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Match: A0A7Y4LYL7_9BRAD (Magnesium transporter MgtE n=31 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A7Y4LYL7_9BRAD)

HSP 1 Score: 254 bits (650), Expect = 3.150e-80
Identity = 129/177 (72.88%), Postives = 149/177 (84.18%), Query Frame = 1 
Query:    1 VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRRPVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVITHDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTAFLASSVLGLFEGELQKMVALAVLAPIV 531
            V PDWTVG  IDYMR + DLP+RFYE+Y VD++Q   G V+LD LLR RRPVP   L+E +RRRV   DDQE VA++F +YNLVAAPVVD  +RLVGVIT DD++DVI EEA+ED+ ALGGVT DEELSD+VW+IARGRFNWLLVNL TAFLASSVLGLFEG+L+KMVALAVLAPIV
Sbjct:  174 VPPDWTVGQAIDYMRDTPDLPDRFYEIYAVDSEQHWQGAVSLDTLLRARRPVPLADLIEEDRRRVSVLDDQEEVARMFGKYNLVAAPVVDTTNRLVGVITIDDVVDVIEEEADEDLKALGGVTSDEELSDNVWTIARGRFNWLLVNLATAFLASSVLGLFEGQLEKMVALAVLAPIV 350
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54325.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A258JI92_9BRAD7.240e-8475.14Magnesium transporter MgtE n=1 Tax=Bradyrhizobium ... [more]
J6LIR1_9RHOB1.730e-8376.27Magnesium transporter MgtE n=1 Tax=Rhodovulum sp. ... [more]
A0A327KTQ0_9HYPH9.510e-8375.14Magnesium transporter MgtE n=1 Tax=Rhodoplanes ele... [more]
A0A327KRN1_9HYPH2.690e-8275.14Magnesium transporter MgtE n=2 Tax=Rhodoplanes Tax... [more]
A0A6P1BS35_9BRAD3.080e-8274.58Magnesium transporter MgtE n=53 Tax=Proteobacteria... [more]
A0A327KBI0_9HYPH5.520e-8274.01Magnesium transporter MgtE n=1 Tax=Rhodoplanes pis... [more]
A0A537L922_9PROT8.450e-8274.01Magnesium transporter MgtE n=1 Tax=Alphaproteobact... [more]
A0A533JBZ1_9BRAD8.680e-8274.01Magnesium transporter MgtE n=1 Tax=Bradyrhizobium ... [more]
A0A537UJD8_9PROT9.750e-8172.32Magnesium transporter MgtE (Fragment) n=1 Tax=Alph... [more]
A0A7Y4LYL7_9BRAD3.150e-8072.88Magnesium transporter MgtE n=31 Tax=Bradyrhizobiac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54325contigP-wetherbeei_contig54325:2..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1187851.A33M_1683
Preferred namemgtE
PFAMsCBS,MgtE,MgtE_N
Model size531
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06213
KEGG TC1.A.26.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.84e-84
EggNOG OGsCOG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,2TRWK@28211|Alphaproteobacteria,3FCGF@34008|Rhodovulum
DescriptionActs as a magnesium transporter
Cds size531
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.9806066-CDS-P-wetherbeei_contig54325:1..5321683186811.9806066-CDS-P-wetherbeei_contig54325:1..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54325 2..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54325.1.1prot_P-wetherbeei_contig54325.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54325 2..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54325.1.1

>prot_P-wetherbeei_contig54325.1.1 ID=prot_P-wetherbeei_contig54325.1.1|Name=mRNA_P-wetherbeei_contig54325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
VAPDWTVGHVIDYMRVSTDLPERFYEVYVVDADQKLLGTVALDLLLRNRR
PVPFGQLVEPERRRVRASDDQEAVAQLFERYNLVAAPVVDGDDRLVGVIT
HDDIIDVIAEEAEEDIHALGGVTHDEELSDSVWSIARGRFNWLLVNLGTA
FLASSVLGLFEGELQKMVALAVLAPIV
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mRNA from alignment at P-wetherbeei_contig54325:2..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54325.1.1 ID=mRNA_P-wetherbeei_contig54325.1.1|Name=mRNA_P-wetherbeei_contig54325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig54325:2..532+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCCGGATTGGACCGTCGGCCATGTCATCGACTACATGCGGGTATC
CACCGATCTGCCGGAGCGGTTTTACGAGGTCTATGTGGTCGATGCCGACC
AAAAGCTGCTCGGCACCGTCGCGCTCGACCTGCTGCTGCGGAACAGGCGT
CCGGTGCCGTTCGGCCAGCTGGTGGAGCCGGAACGCCGCCGCGTCCGCGC
CTCCGACGACCAGGAGGCGGTGGCGCAATTATTCGAGCGCTACAATTTGG
TCGCCGCCCCTGTCGTCGATGGCGACGACCGGCTGGTCGGCGTCATCACC
CATGACGACATCATCGACGTCATCGCCGAGGAGGCGGAAGAGGATATCCA
CGCGCTGGGCGGCGTCACCCATGACGAGGAATTGTCGGATTCGGTGTGGT
CGATCGCGCGCGGCCGCTTCAACTGGTTGCTGGTCAATCTCGGCACCGCC
TTCCTGGCCTCCTCGGTGCTCGGCCTGTTTGAGGGCGAATTGCAGAAAAT
GGTGGCGCTGGCGGTGCTCGCCCCGATCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54325:2..532+

>mRNA_P-wetherbeei_contig54325.1.1 ID=mRNA_P-wetherbeei_contig54325.1.1|Name=mRNA_P-wetherbeei_contig54325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig54325:2..532+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCCGGATTGGACCGTCGGCCATGTCATCGACTACATGCGGGTATC
CACCGATCTGCCGGAGCGGTTTTACGAGGTCTATGTGGTCGATGCCGACC
AAAAGCTGCTCGGCACCGTCGCGCTCGACCTGCTGCTGCGGAACAGGCGT
CCGGTGCCGTTCGGCCAGCTGGTGGAGCCGGAACGCCGCCGCGTCCGCGC
CTCCGACGACCAGGAGGCGGTGGCGCAATTATTCGAGCGCTACAATTTGG
TCGCCGCCCCTGTCGTCGATGGCGACGACCGGCTGGTCGGCGTCATCACC
CATGACGACATCATCGACGTCATCGCCGAGGAGGCGGAAGAGGATATCCA
CGCGCTGGGCGGCGTCACCCATGACGAGGAATTGTCGGATTCGGTGTGGT
CGATCGCGCGCGGCCGCTTCAACTGGTTGCTGGTCAATCTCGGCACCGCC
TTCCTGGCCTCCTCGGTGCTCGGCCTGTTTGAGGGCGAATTGCAGAAAAT
GGTGGCGCTGGCGGTGCTCGCCCCGATCGTG
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