mRNA_P-wetherbeei_contig54295.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54295.1.1
Unique NamemRNA_P-wetherbeei_contig54295.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: A0A1U7PII5_9BACI (Endonuclease YncB, thermonuclease family n=1 Tax=Edaphobacillus lindanitolerans TaxID=550447 RepID=A0A1U7PII5_9BACI)

HSP 1 Score: 58.9 bits (141), Expect = 5.810e-9
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKASK 126
            +K  AS++ YH+PGG+YYDR   +++F +E+EA AAGY+ASK
Sbjct:  372 IKGNASSRIYHMPGGQYYDRTNAEVMFCSESEAQAAGYRASK 413
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: UPI0003FA4332 (hypothetical protein n=1 Tax=Nakamurella lactea TaxID=459515 RepID=UPI0003FA4332)

HSP 1 Score: 55.5 bits (132), Expect = 5.330e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKASK 126
            +K  A +  YHVPGG +YDR   +  FATEA+A+AAGY+ASK
Sbjct:  168 IKGNADSMIYHVPGGEFYDRTNPEECFATEADAVAAGYRASK 209
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: UPI0004C32601 (hypothetical protein n=1 Tax=Lentzea aerocolonigenes TaxID=68170 RepID=UPI0004C32601)

HSP 1 Score: 50.8 bits (120), Expect = 7.110e-7
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYK 117
            +K  + T  YH P   YY R  GD++FA+EAEA+AAGY+
Sbjct:   63 IKGNSKTLVYHTPDSPYYKRTKGDLMFASEAEAIAAGYR 101
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: A0A7W1CPH3_9ACTN (50S ribosomal protein L22 n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CPH3_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 8.720e-7
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKA 120
            +K  AS+K YHVPGGRYYD  + ++ F T   A AAGY+A
Sbjct:  360 IKGNASSKKYHVPGGRYYDVTIAEVFFDTAEHAEAAGYEA 399
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: A0A1H9JTI9_9PSEU (Uncharacterized protein n=1 Tax=Lentzea xinjiangensis TaxID=402600 RepID=A0A1H9JTI9_9PSEU)

HSP 1 Score: 48.1 bits (113), Expect = 1.040e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYK 117
            +K  + T  YH P   YY R+ GD+ FA+EA+ALAAGY+
Sbjct:   73 LKGNSRTMVYHTPESPYYKRMKGDMTFASEADALAAGYR 111
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: A0A7C9VW19_9PSEU (Uncharacterized protein n=2 Tax=Lentzea TaxID=165301 RepID=A0A7C9VW19_9PSEU)

HSP 1 Score: 46.6 bits (109), Expect = 3.370e-5
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYK 117
            +K  + T  YH     YY+R+ GD+ FA+EAEA+AAGY+
Sbjct:   66 LKGNSKTMVYHTSDSPYYNRMKGDMAFASEAEAVAAGYR 104
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: C3AVP5_9BACI (Metallo-beta-lactamase super n=11 Tax=Bacillus TaxID=1386 RepID=C3AVP5_9BACI)

HSP 1 Score: 47.4 bits (111), Expect = 4.390e-5
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 KATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKASK 126
            K +   K YH+PG ++YD+   + +F +EAEA AAGY+ASK
Sbjct:  142 KNSKGEKIYHMPGQQFYDKTNAEKMFCSEAEAKAAGYRASK 182
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: UPI001F46F076 (thermonuclease family protein n=1 Tax=Paenibacillus sp. YPD9-1 TaxID=2908839 RepID=UPI001F46F076)

HSP 1 Score: 47.4 bits (111), Expect = 6.120e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   22 KTYHVPGGRYYDRVVGDILFATEAEALAAGYKAS 123
            K YHVPGGRYYD+   +++F TE +A+A G++ S
Sbjct:  201 KIYHVPGGRYYDQTHAEMMFCTEEDAVAQGFRKS 234
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: UPI001573489D (hypothetical protein n=3 Tax=Bacillus TaxID=1386 RepID=UPI001573489D)

HSP 1 Score: 47.4 bits (111), Expect = 6.140e-5
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 KATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKASK 126
            K +   K YH+PG ++YD+   + +F +EAEA AAGY+ASK
Sbjct:  196 KNSKGEKIYHMPGQQFYDKTNAEEMFCSEAEAKAAGYRASK 236
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BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Match: A0A2B4BJ90_BACTU (Uncharacterized protein n=3 Tax=Bacillus cereus group TaxID=86661 RepID=A0A2B4BJ90_BACTU)

HSP 1 Score: 47.0 bits (110), Expect = 6.610e-5
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 KATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKASK 126
            K +   K YH+PG ++YD+   + +F +EA+A AAGY+ASK
Sbjct:  151 KNSKGEKIYHIPGQQFYDKTNAEEMFCSEADAQAAGYRASK 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A1U7PII5_9BACI5.810e-954.76Endonuclease YncB, thermonuclease family n=1 Tax=E... [more]
UPI0003FA43325.330e-857.14hypothetical protein n=1 Tax=Nakamurella lactea Ta... [more]
UPI0004C326017.110e-751.28hypothetical protein n=1 Tax=Lentzea aerocolonigen... [more]
A0A7W1CPH3_9ACTN8.720e-755.0050S ribosomal protein L22 n=1 Tax=Acidimicrobiia b... [more]
A0A1H9JTI9_9PSEU1.040e-551.28Uncharacterized protein n=1 Tax=Lentzea xinjiangen... [more]
A0A7C9VW19_9PSEU3.370e-548.72Uncharacterized protein n=2 Tax=Lentzea TaxID=1653... [more]
C3AVP5_9BACI4.390e-548.78Metallo-beta-lactamase super n=11 Tax=Bacillus Tax... [more]
UPI001F46F0766.120e-552.94thermonuclease family protein n=1 Tax=Paenibacillu... [more]
UPI001573489D6.140e-548.78hypothetical protein n=3 Tax=Bacillus TaxID=1386 R... [more]
A0A2B4BJ90_BACTU6.610e-546.34Uncharacterized protein n=3 Tax=Bacillus cereus gr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54295contigP-wetherbeei_contig54295:85..216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog929506.CbC4_2116
PFAMsAda_Zn_binding,Lactamase_B
Model size132
Max annot lvl186801|Clostridia
KEGG koko:K02238
KEGG TC3.A.11.1,3.A.11.2
KEGG ModuleM00429
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.43e-07
EggNOG OGsCOG2333@1|root,COG2333@2|Bacteria,1TS9U@1239|Firmicutes,249VR@186801|Clostridia,36DFY@31979|Clostridiaceae
Descriptiondomain protein
Cds size132
COG categoryL
BRITEko00000,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.5727854-CDS-P-wetherbeei_contig54295:84..2161683186811.5727854-CDS-P-wetherbeei_contig54295:84..216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54295 85..216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54295.1.1prot_P-wetherbeei_contig54295.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54295 85..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54295.1.1

>prot_P-wetherbeei_contig54295.1.1 ID=prot_P-wetherbeei_contig54295.1.1|Name=mRNA_P-wetherbeei_contig54295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
VKATASTKTYHVPGGRYYDRVVGDILFATEAEALAAGYKASKH*
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mRNA from alignment at P-wetherbeei_contig54295:85..216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54295.1.1 ID=mRNA_P-wetherbeei_contig54295.1.1|Name=mRNA_P-wetherbeei_contig54295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig54295:85..216- (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGGCGACAGCGAGTACGAAGACGTATCACGTCCCCGGCGGTCGTTA
CTACGATCGCGTCGTTGGCGACATTCTCTTCGCCACCGAGGCGGAGGCCC
TCGCTGCCGGATACAAGGCCTCGAAGCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54295:85..216-

>mRNA_P-wetherbeei_contig54295.1.1 ID=mRNA_P-wetherbeei_contig54295.1.1|Name=mRNA_P-wetherbeei_contig54295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig54295:85..216- (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGGCGACAGCGAGTACGAAGACGTATCACGTCCCCGGCGGTCGTTA
CTACGATCGCGTCGTTGGCGACATTCTCTTCGCCACCGAGGCGGAGGCCC
TCGCTGCCGGATACAAGGCCTCGAAGCACTGA
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