mRNA_P-wetherbeei_contig5429.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5429.1.2
Unique NamemRNA_P-wetherbeei_contig5429.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5429.1.2 vs. uniprot
Match: A0A482SF22_9ARCH (KH_dom_type_1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF22_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 1.860e-19
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 3 
Query:  873 KIGWVIGKNGSYVQQLAVKSGATLRVSDSSSYEYGRTWKYVQISGPPRAVDRAKKLLHIRLERLADR-PTDSAAAQQV 1103
            ++GWV+GK GSY+ QL+ KSGA + +S+S+S E+G  WKY+QI+G  R VDRAKKLLH+R+ER+  R P D    ++V
Sbjct:   13 QVGWVVGKRGSYINQLSAKSGAQIDISESTSREFGTVWKYIQITGTGREVDRAKKLLHLRIERMEPRAPPDHHVEEKV 90
[Close]
BLAST of mRNA_P-wetherbeei_contig5429.1.2 vs. uniprot
Match: L1IPZ1_GUITC (KH domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1IPZ1_GUITC)

HSP 1 Score: 94.0 bits (232), Expect = 3.960e-19
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 3 
Query:  834 PELINQSVPLPEEKIGWVIGKNGSYVQQLAVKSGATLRVSDSSSYEYGRTWKYVQISGPPRAVDRAKKLLHIRLE 1058
            P  I QS+P+P E++GW+IGK G+Y+Q L  +SG ++ VSD+   E+GR W YVQ+ G  R+VD+AKKL+++RLE
Sbjct:   38 PAEIYQSIPIPAERVGWIIGKQGAYIQNLEKRSGCSISVSDNPCKEFGREWNYVQLQGSTRSVDKAKKLIYMRLE 112
[Close]
BLAST of mRNA_P-wetherbeei_contig5429.1.2 vs. uniprot
Match: A0A5B8MDD8_9CHLO (KH domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MDD8_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 9.050e-19
Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 3 
Query:  834 PELINQSVPLPEEKIGWVIGKNGSYVQQLAVKSGATLRVSDSSSYEYGRTWKYVQISGPPRAVDRAKKLLHIRLERLADRPTDSAAAQ 1097
            P  I QS+P+P +++GW+IGK G+++QQ+  +SG ++ +SD+   E+GR W YVQ+SG  R+VD+AKKLL +RL+   ++      AQ
Sbjct:   62 PHSIYQSIPIPSDRVGWIIGKRGAFIQQIEKRSGCSIVISDAPMKEFGREWNYVQLSGTARSVDKAKKLLFLRLDSFQEQDARPMPAQ 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5429.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A482SF22_9ARCH1.860e-1953.85KH_dom_type_1 domain-containing protein n=1 Tax=ar... [more]
L1IPZ1_GUITC3.960e-1952.00KH domain-containing protein n=3 Tax=Guillardia th... [more]
A0A5B8MDD8_9CHLO9.050e-1944.32KH domain-containing protein n=1 Tax=Chloropicon p... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5429contigP-wetherbeei_contig5429:483..3262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog340170.XP_007377593.1
Preferred nameHEK2
PFAMsKH_1
Model size2555
Max annot lvl4751|Fungi
KEGG koko:K18738
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0008298,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010648,GO:0010833,GO:0016043,GO:0017091,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0035925,GO:0036464,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043409,GO:0043487,GO:0043488,GO:0043489,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045934,GO:0045936,GO:0046483,GO:0048255,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0060249,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070935,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902369,GO:1902373,GO:1902531,GO:1902532,GO:1903311,GO:1903312,GO:1990904
Exons2
Evalue5.06e-06
EggNOG OGsKOG2190@1|root,KOG2190@2759|Eukaryota,38G1X@33154|Opisthokonta,3NW5E@4751|Fungi,3QKRE@4890|Ascomycota,3RTG4@4891|Saccharomycetes,47B7U@766764|Debaryomycetaceae
DescriptionPfam:KH_3
Cds size477
COG categoryA
BRITEko00000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.523951-UTR-P-wetherbeei_contig5429:482..17361683186811.523951-UTR-P-wetherbeei_contig5429:482..1736Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5429 483..1736 -
1683186811.5497403-UTR-P-wetherbeei_contig5429:2438..32621683186811.5497403-UTR-P-wetherbeei_contig5429:2438..3262Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5429 2439..3262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.5334647-CDS-P-wetherbeei_contig5429:1736..20671683186811.5334647-CDS-P-wetherbeei_contig5429:1736..2067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5429 1737..2067 -
1683186811.5417066-CDS-P-wetherbeei_contig5429:2292..24381683186811.5417066-CDS-P-wetherbeei_contig5429:2292..2438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5429 2293..2438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5429.1.2prot_P-wetherbeei_contig5429.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5429 1737..2438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5429.1.2

>prot_P-wetherbeei_contig5429.1.2 ID=prot_P-wetherbeei_contig5429.1.2|Name=mRNA_P-wetherbeei_contig5429.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MPSPELINQSVPLPEEKIGWVIGKNGSYVQQLAVKSGATLRVSDSSSYEY
GRTWKYVQISGPPRAVDRAKKLLHIRLERLADRPTDSAAAQQVCALCWLL
FPLFAGGLWWRVSRPLRHRIEQQPKLEQLVRRKSETSQSTVLTHRSGVPS
FAACRRLI*
back to top

mRNA from alignment at P-wetherbeei_contig5429:483..3262-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5429.1.2 ID=mRNA_P-wetherbeei_contig5429.1.2|Name=mRNA_P-wetherbeei_contig5429.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2780bp|location=Sequence derived from alignment at P-wetherbeei_contig5429:483..3262- (Phaeothamnion wetherbeei SAG_119_79)
GAAGATTGGGGACGAGGAACAAGGGTGGCCGGACACTTTTTGGTCGCCAC
TTCTCTATCAATAGCTTCCAGGTGAGGCGCAAGCAAAAAACCCTGGGCTC
CCTTTCTTCTCGCGCCTCTCGTTTGTCGCCTGATCATAAAGGATGTGTTT
CTCACACCTGGGTTTCCGACTTCTTTCTTCCTCTCTCTCTCGCTTACTGT
CCATGTCTTTCGCCTGCGCCATCCTCTCTCACTCTCTCCTCCCTTCGCAA
AATATCTCGATCGACCCACATAAAAGACACATTTTAGTACTCGGCAATTT
TCAGACGGGGCGCTGCGCAAGTGCCAAGCGGACGTGTTTAATCCATCTTC
GTAATATCTGCACTCCCGTTCTTCGTTGCTCAGGGCACTTTTTTCAGTCT
GAACGTCTTCATAGGAGCGCGAGATGGAGGTGTGAGAGTAACGGCGCGAA
CTTGACATTAACGCTCGGCAAGTCGCGAAATCTCGTTCGGAGTTCAATCT
TCAACCTTTTTCGTGTGTGACGCTGCGAAACTGCTCGAGTGAAGGTGCGT
TATATCTCCGTGCCGTCCTGTAGACCAATTGAATCCGCCAGAGCGTTCCA
ATCGCCGCTGCTTCGCCGCTGCTTCGCCGCTGCTGTCTCTACTTGACAAC
CGCTGTACAGAGGAGCGAGGCGACAGGAGAGAGCAATTCCAAAAGGTAGA
CAAGGCTAAACACCCGCCTCAAAAGGCCGAGGAGGAGGGAGCAATCCGCT
ACAGTTGCTGTAGCTGAGAAGGGGCTCAACTCTCGTACCAAAAGCTCTTT
TTGGATCTGGGCGGACGCCGAAAGATGCCGTCGCCAGAGCTCATCAACCA
GAGCGTTCCATTGCCGGAGGAGAAGATCGGATGGGTGATTGGCAAGAACG
GATCGTACGTTCAGCAGCTGGCTGTAAAGTCCGGCGCCACCTTGCGGGTC
AGCGACAGCAGCAGCTACGAGTGAGTGGTCTTCGTGTCTTTCCGGTGCTT
TCTCTTGTTCACCTTCATTTCAGCCCAGCGCGGAGGGAATGATGCGCTGG
GCTGAAGCGGTTGTTATGTCCTCCTTTCGCGTGGTAGCTGAAGCGTCTTC
CATTCTTCGGCTTGTAATCTAGCTGTTTATTTGACTCGTGCCGCCACCCT
GCGCCGTCACTGCCGCCACCATGCCGCTATTGTTGCCTTCCCTAGGTACG
GACGCACTTGGAAGTACGTGCAGATTTCGGGCCCGCCACGCGCCGTCGAC
CGGGCGAAGAAGCTGCTACACATTCGCCTTGAAAGACTCGCCGACCGGCC
GACGGACAGCGCCGCTGCGCAGCAGGTGTGCGCGCTGTGCTGGCTCCTTT
TCCCTCTTTTTGCCGGCGGTCTTTGGTGGCGTGTCAGTCGTCCCTTACGA
CATCGTATCGAACAACAGCCAAAGCTTGAGCAGTTGGTACGGCGTAAAAG
TGAGACCTCACAGTCGACCGTCTTGACGCATCGTTCAGGGGTCCCCTCTT
TCGCTGCGTGCCGCCGCCTGATTTGAAAAGCGTTGTATTAATCCCTCTTC
CCTTCACTGCTGCTTCCACCTGTTGTCCGTTTGCTGCTTACGCACAGATC
GATGCGACCGACTACGCCGCTCCAAGCACAAACGGTTACGCCGCCACCAT
AGGCGCGGCCGCCCCGGCGGCGCGAGCGATCCCTGTCCCGGCGCCGATCA
GCGGCAGCATCAACCCGCCGCCATCTGTCGAGCCCCAGGCCCAGGCTGTG
GAGGCGTAACAGCCCCACCGCCGTCGGCGAGAGCGCGCCCGTTTAATTAC
CGCCGATGCGCACGCGGTGCACGCACGGAAAAGGATGGCGACCATGACGA
CGGCAGCGGAGGAGAGGAACGGCAGACAAGTGGCGACATTAAGCGCCCAG
GGATTCGACTTGAGCGGAGCGCGTAGACGCGCGCGGGGTTAGACGGTTGC
ACGTCGACTAGGTGACTTGGTCAGCTTAGGGGGTTTCTGGGTGGGGCGGG
GGCGAAACTGCGAAACACTTGTCTGTCGTCTTGATGGGTACAGCGTCGGC
AGCGATGGCGTAGCTTCGCGACGCCCCGAGCACCAGCAGGCGAGACGGAG
ACAAGCTGCACGCGGGGCGGTAGCGGGCGGCGGCGGCGCCGTCAGCCGGC
GGGGAGGGCGGGCAGCGGGCAGAGCAACAAAGCTGCAATGATTGGATGTC
GCTATTATTGCATTCCGAGGTCCTTCTTCAGCTTCCTCAGTTCGTCCTCG
ACCGCGGCCTGGACCTGGCGGGGCCTGTGGCGGGCGCGCGGACGTTGGGC
CGACCAGCGGCAAGCGACAGTGAACGACGCCGGCGAGAACGACGGCGGTA
CCAATGGGTGGCGGGAACGGGGACGGACGGATAGTGGGTGGGATGTTAAT
CAGTGGGAGCAAGTAGTGGATGCGATGGCTTTGGGGGGGAACAAGGGGCA
CTGTCGGGAGATCGGCAACGCCCGGGGCTCAGTTGCGAAGCAGCGCCAAT
TGGTAGTGCGACGCCACAATACGTGGGCGAGCGGCCCGGTTCAAAGAGGC
CGCGGAGTAAGTAAGGATCGGGGTGGGGACTTAAGGGCATTGAGGCTAGG
AATTGGGGAGATGAACTGAGCAAGCATGATCGATGACGCTCTGCCTCTTC
ATCGGAAATAACACCATTTGCACCAAAGAGACAACGATTTTCTTCTGAAC
GTATTTTGGAATTGATAGCGGGACTTGCCTTGGGTGAGACCGCGACGCGC
CGGCTGCATTTCCTTCTCCATATGTTTCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5429:483..3262-

>mRNA_P-wetherbeei_contig5429.1.2 ID=mRNA_P-wetherbeei_contig5429.1.2|Name=mRNA_P-wetherbeei_contig5429.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig5429:483..3262- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGCCAGAGCTCATCAACCAGAGCGTTCCATTGCCGGAGGAGAA
GATCGGATGGGTGATTGGCAAGAACGGATCGTACGTTCAGCAGCTGGCTG
TAAAGTCCGGCGCCACCTTGCGGGTCAGCGACAGCAGCAGCTACGAGTAC
GGACGCACTTGGAAGTACGTGCAGATTTCGGGCCCGCCACGCGCCGTCGA
CCGGGCGAAGAAGCTGCTACACATTCGCCTTGAAAGACTCGCCGACCGGC
CGACGGACAGCGCCGCTGCGCAGCAGGTGTGCGCGCTGTGCTGGCTCCTT
TTCCCTCTTTTTGCCGGCGGTCTTTGGTGGCGTGTCAGTCGTCCCTTACG
ACATCGTATCGAACAACAGCCAAAGCTTGAGCAGTTGGTACGGCGTAAAA
GTGAGACCTCACAGTCGACCGTCTTGACGCATCGTTCAGGGGTCCCCTCT
TTCGCTGCGTGCCGCCGCCTGATTTGA
back to top