prot_P-wetherbeei_contig54289.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig54289.1.1
Unique Nameprot_P-wetherbeei_contig54289.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length177
Homology
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A1Z9ULU3_9GAMM (DNA replication and repair protein RecF n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9ULU3_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 2.270e-32
Identity = 79/179 (44.13%), Postives = 112/179 (62.57%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLR--SARKSQVSYWDEILAKSGEAINQSRLAIISSINGNLAASEIPGLTSGDLYFEFSPGWN 177
            GKSF+++RS D++  G+ G S+ A  G+        I V+K  A T+I L+G+ V  AS LA + PV+VI S A  LL E P NRRALLD++LFHV+  YV  +K+YR+ALRQRN+L+R  S RK   + W+E L   GE I++ R  I+  +N  L +  +     G+LYF + PGW+
Sbjct:   49 GKSFVSNRSGDIIRRGAPGASVIAS-GETTTADPLSIRVRKKGAKTEIFLNGKPVKKASELATSAPVIVITSHAATLLTEGPGNRRALLDKTLFHVEPDYVEEFKKYRRALRQRNQLIRGRSLRKIHRA-WNEQLILVGEEIDRKREDIVLRLNAELKSKAVSKFF-GELYFRYMPGWD 224          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A523P3C6_9PROT (DNA replication and repair protein RecF n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P3C6_9PROT)

HSP 1 Score: 107 bits (266), Expect = 1.970e-24
Identity = 68/176 (38.64%), Postives = 101/176 (57.39%), Query Frame = 0
Query:    2 KSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRS-ARKSQVSYWDEILAKSGEAINQSRLAIISSINGNLAASEIPGLTSGDLYFEFSPGW 176
            +SF   R S+++  G   L ++ E+ D A   + V  V+K    T++ ++G+AVT AS++AR +PVL  N+ +  LL   P+NRRALLDR LFHV+  Y+   K Y + L+QRN LLR+     QV YWD  L      +++ R A IS++N  + AS +     G L  E+  GW
Sbjct:   50 RSFRASRVSEVISHGQTALIVSGELKDSAGVNSRV-GVEKTSNTTRLRINGEAVTVASTIARLVPVLTFNTESYSLLNGGPANRRALLDRLLFHVEPEYLRTLKTYYRGLKQRNALLRANTTHKQVVYWDHQLEAVANRLDRWRGACISTLNEYICASAL-NERIGSLELEYRRGW 223          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A3D5DJ85_9GAMM (DNA replication and repair protein RecF n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DJ85_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 3.820e-24
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 0
Query:    2 KSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRS-ARKSQVSYWDEILAKSGEAINQSRLAIISSINGNLAASEIPGLTSGDLYFEFSPGW 176
            +SF T R+SD++  G N L +  ++   A     V + K  K  T++ L+G+ V  +S +AR +PVL  N+ +  +L   P+NRRALLDR LFHV+  Y+ + K+Y +AL+QRN LLR+ A ++QV  WD  LA     ++  R   IS+IN  L  SE+  +  G L  E+  GW
Sbjct:   50 RSFRTTRTSDVISHGQNTLVVNGKLQGGAGQNYRVGIEKTRKT-TRLKLNGEIVRVSSKIARLVPVLTFNTESHLMLNGGPANRRALLDRLLFHVEPRYLEVLKDYYRALKQRNTLLRTKASRTQVRLWDTQLAPMAAELDGWRGECISTINRYLEESEVADIC-GSLRLEYQRGW 223          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A509MRK0_9GAMM (DNA replication and repair protein RecF n=1 Tax=Marinobacter halodurans TaxID=2528979 RepID=A0A509MRK0_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 1.680e-21
Identity = 61/191 (31.94%), Postives = 104/191 (54.45%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKK-HKA---------DTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRSAR--KSQVSYWDEILAKSGEAINQSRLAIISSINGNLAA--SEIPGLTSGDLYFEFSPGWN 177
            G+SF  +R   +V  GS  L++  EV D  +   +   +K+ H+          +T++ +DG+ V   S++AR+LPV VI+    D++   P  RR  LD S+FHV+H +  LW+++++A+ QRN++LR+ R  +S +  WD       E +  +R  +       L +  +++    SGDL FEF PGW+
Sbjct:   49 GRSFRVNRHEAVVRHGSPSLTVFGEVSDNTEHSDAPTPLKETHRIGISRDLGTRETRLKVDGERVRNLSAVARHLPVSVIDPGTFDIVTGGPGKRRQFLDWSVFHVEHGFAALWQQFQRAVSQRNKILRNGRIDESLLRIWDSQYIALAEQVTGARRRVFEQFQPLLESVIADVDVAWSGDLKFEFFPGWD 239          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A2K9LQG4_9GAMM (DNA replication and repair protein RecF n=1 Tax=Ketobacter alkanivorans TaxID=1917421 RepID=A0A2K9LQG4_9GAMM)

HSP 1 Score: 97.4 bits (241), Expect = 7.840e-21
Identity = 60/187 (32.09%), Postives = 102/187 (54.55%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRSARK---SQVSYWDEILAKSGEAINQSRLAIISS-------INGNLAASEIPGLTSGDLYFEFSPGWN 177
            G+SF +  S  L+  GS+ L +  +V   +   + + + K    +T   LDG+ ++  S LA+ LP + I++ + +L+   PS RR++LD  LFHV+HSY+  W +YR ALRQ+N LL+S       QV+YW+ +L + GE ++  R+  + +       I  +   S++      D+ F +  GWN
Sbjct:   49 GRSFRSADSKKLIAQGSDQLVVFGKVCAESLKESRLGISKDSMGNTNARLDGERLSKVSVLAKMLPSIAIDTSSVELIEGGPSLRRSMLDWGLFHVEHSYLDAWSQYRAALRQKNALLKSTASVTAHQVNYWNAVLERYGERLDTERMQYVDALIVYTQRIFKHYFGSDV------DIQFRYRAGWN 229          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A839UWI2_9GAMM (DNA replication and repair protein RecF n=1 Tax=Simiduia aestuariiviva TaxID=1510459 RepID=A0A839UWI2_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 2.990e-20
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRSARKSQ--VSYWDEILAKSGEAINQSRLAIISSINGNLAASEIPGLTSGDLYFEFSPGWN 177
            G+SF +H+   L+  G   +++  +  D A     + V +  +   Q  ++G+ V++AS LA+ +P+  I S    LL   P  RR  LD  +FHV+H ++  W++ RQAL+QRN LLRS R +   ++ WD  L++ GE +++ R  +   +   L     P     DL  E+  GW+
Sbjct:   49 GRSFRSHKLKPLIQQGQTAVTVFGKYTDSAQGQVRIGVERTQRGADQFRVNGKPVSSASELAQVMPLQTIFSETFALLTGGPGERRQFLDWLVFHVEHQFMPAWRQVRQALKQRNSLLRSGRITADLLAPWDVELSRQGELLDKLRCRVFHELKAELLTLLAPIPVYKDLEIEYQRGWS 227          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A831M3M9_9BACT (DNA replication and repair protein RecF n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A831M3M9_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 1.390e-18
Identity = 58/184 (31.52%), Postives = 99/184 (53.80%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVG-DMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRSARKSQVSYWDEILAKSGEAINQSRLAIISSINGNLA------ASEIPGLTSGDLYFEFSPGWN 177
            G+SFL+ ++   +  G++  +I   +  D  +    +   K  +  T+I +DG  +   ++ A  LPV++I   +  L+G  PS RR LLD  LFHV+HS++G+W+ Y++ L+QRN  L     S +  W E LA +GEAI++ R +   ++   L       A E+P +T      ++ PGW+
Sbjct:   52 GRSFLSAQAVHFISHGASKATIFGRIRTDSQEIRLGI--EKDLQGATEIRMDGARLQGQAAAAEQLPVVLITPESHALIGGGPSERRTLLDWGLFHVEHSFLGIWRRYQRLLKQRNAALEQG--SALEPWSEGLAAAGEAISEQRRSYTEALRPRLQETLAALAPELPEVT-----LDYQPGWS 226          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A1I2H9B7_9GAMM (DNA replication and repair protein RecF n=1 Tax=Fontimonas thermophila TaxID=1076937 RepID=A0A1I2H9B7_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 4.990e-18
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 0
Query:   46 TQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRS-ARKSQVSYWDEILAKSGEAINQSRLAIISSINGNLAASEIPGLTSGDLYFEFSPGW 176
            T+I +DG+A T+   L R LPV ++      +L E P  RR+ LD  +FHV+  ++ LW+ YR+ALRQRN+LLR+ A   Q++ W+  LA++GE ++  R A + +I   + A     +  G+ +F+  PGW
Sbjct:   94 TEIRVDGRAATSLD-LLRTLPVQILEPGMHKMLQEGPVYRRSFLDWGVFHVEPQFLPLWRRYRRALRQRNQLLRAGADDRQIAAWEPELAEAGEQLDAQRCAHLDAIRPAVLAGIEVLIGEGEWHFDLYPGW 224          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A2A5CNN1_9GAMM (DNA replication and repair protein RecF n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A2A5CNN1_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 9.900e-18
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIV--VKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELL--RSARKSQVSYWDEILAKSGEAINQSRLAIISSINGNLAAS 158
            GKSF   +   ++    + L+I+A +  +  F   V V   K     T   +  + +   S +A  LPV VI   + +++  +PS RR +LD  +FHV+HS++G W+ +  ALRQRN LL  R++  SQ+ YWD IL  + E I ++RL     +   LA S
Sbjct:   49 GKSFRKTQKKSVIADAQDNLTISALLSCVGQFDADVRVGISKFSNGKTLAKIANEKIGRVSEVASLLPVCVIEPNSTEVIEGSPSVRRQVLDWGVFHVEHSFIGQWRIFSNALRQRNALLKHRTSDTSQLKYWDAILCPAAEEITRARLRYFEDLENELAGS 210          
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Match: A0A0F9YVK7_9ZZZZ (DNA replication and repair protein RecF n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9YVK7_9ZZZZ)

HSP 1 Score: 88.6 bits (218), Expect = 1.450e-17
Identity = 58/180 (32.22%), Postives = 92/180 (51.11%), Query Frame = 0
Query:    1 GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITLDGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSYVGLWKEYRQALRQRNELLRSARK---SQVSYWDEILAKSGEAINQSRLAIISSINGNLAASEIPGLTSGDLYFEFSPGWN 177
            G+SF TH+   LV        + A++G+    G    ++K      ++  DG+      S+A  LP+ V+N+ +  LL  +   RR  LD ++FHV+HSY+  W+ YR+ +  RN LL+S      +Q+  WD  LA  G+AI++SR AII S    L A     L +  +   +  GW+
Sbjct:   50 GRSFRTHKVDPLVKHEQKDFLVFADLGEQGRIG----LLKSRAGKKELKFDGEQQGNWQSVAAALPLQVLNTESFQLLEGSGKIRRRFLDWAVFHVEHSYLDDWRAYRRGIAHRNSLLKSGGAGLHAQLDAWDVELAGLGQAIHESRTAIIESFGALLQAVVGELLPNRKITLGYKAGWD 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54289.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9ULU3_9GAMM2.270e-3244.13DNA replication and repair protein RecF n=2 Tax=Ga... [more]
A0A523P3C6_9PROT1.970e-2438.64DNA replication and repair protein RecF n=1 Tax=Pr... [more]
A0A3D5DJ85_9GAMM3.820e-2439.20DNA replication and repair protein RecF n=1 Tax=Ga... [more]
A0A509MRK0_9GAMM1.680e-2131.94DNA replication and repair protein RecF n=1 Tax=Ma... [more]
A0A2K9LQG4_9GAMM7.840e-2132.09DNA replication and repair protein RecF n=1 Tax=Ke... [more]
A0A839UWI2_9GAMM2.990e-2031.28DNA replication and repair protein RecF n=1 Tax=Si... [more]
A0A831M3M9_9BACT1.390e-1831.52DNA replication and repair protein RecF n=1 Tax=Br... [more]
A0A1I2H9B7_9GAMM4.990e-1837.88DNA replication and repair protein RecF n=1 Tax=Fo... [more]
A0A2A5CNN1_9GAMM9.900e-1833.95DNA replication and repair protein RecF n=1 Tax=Mo... [more]
A0A0F9YVK7_9ZZZZ1.450e-1732.22DNA replication and repair protein RecF n=1 Tax=ma... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042174DNA-binding RecF, domain 2GENE3D1.20.1050.90coord: 75..177
e-value: 3.4E-22
score: 81.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 38..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54289contigP-wetherbeei_contig54289:2..532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54289.1.1mRNA_P-wetherbeei_contig54289.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig54289 2..532 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig54289.1.1 ID=prot_P-wetherbeei_contig54289.1.1|Name=mRNA_P-wetherbeei_contig54289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
GKSFLTHRSSDLVLAGSNGLSITAEVGDMADFGTSVIVVKKHKADTQITL
DGQAVTTASSLARNLPVLVINSRAPDLLGENPSNRRALLDRSLFHVKHSY
VGLWKEYRQALRQRNELLRSARKSQVSYWDEILAKSGEAINQSRLAIISS
INGNLAASEIPGLTSGDLYFEFSPGWN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042174RecF_2
IPR027417P-loop_NTPase