mRNA_P-wetherbeei_contig5423.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5423.1.1
Unique NamemRNA_P-wetherbeei_contig5423.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5423.1.1 vs. uniprot
Match: D8LR74_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR74_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.790e-35
Identity = 73/140 (52.14%), Postives = 104/140 (74.29%), Query Frame = 1 
Query:  124 DAELKSACAAALFNLALDAHNCGAMIESGALPPILRLAHRGTSMQTKVQCMAILQRMLAAPELPEQVRSSALVETLVSLSRLDHGPTQHRCVIAMHRLSCWEDGRRLLLADGAAAAQLVRLLSQPSEQVRRGCAATLCNL 543
            D  L++ CAAAL+NLA +  NC AMI SGA+PP++ LA  G S +TK QCM+ILQRML    +PE++ + + V TL+ +S+++H  TQ R VIA++R+SC E GR LLL +GA  + L+RL+S+P+E++R+GCA TL NL
Sbjct:  581 DKALQADCAAALYNLARNQENCQAMIVSGAVPPVIVLAKSG-SFETKTQCMSILQRMLLGRTMPEEIMTKSFVRTLLDMSKMEHRDTQQRVVIAVYRISCCERGRELLLEEGAPES-LIRLISKPNEEMRKGCANTLLNL 718
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BLAST of mRNA_P-wetherbeei_contig5423.1.1 vs. uniprot
Match: A0A6H5KQD4_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.460e-33
Identity = 75/150 (50.00%), Postives = 104/150 (69.33%), Query Frame = 1 
Query:  124 DAELKSACAAALFNLALDAHNCGAMIESGALPPILRLAHRGTSMQTKVQCMAILQRMLAAPELPE----------QVRSSALVETLVSLSRLDHGPTQHRCVIAMHRLSCWEDGRRLLLADGAAAAQLVRLLSQPSEQVRRGCAATLCNL 543
            D  L++ CAAAL+NLA +  NC AMI SGA+PPI+ LA  G S +TK QCM+ILQRML    +PE          Q+ + + V TL+ +S+++H  TQ R VIA++R+SC E GR LLL +GA  + L+RL+S+P+E++R+GCA TL NL
Sbjct:  301 DKALQADCAAALYNLARNQENCQAMIVSGAVPPIIVLAKSG-SFETKTQCMSILQRMLLGRAMPEERKHCNHYTHQIMTKSFVRTLLDMSKMEHRDTQQRVVIAVYRISCCERGRELLLEEGAPES-LIRLISKPNEEMRKGCANTLLNL 448
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BLAST of mRNA_P-wetherbeei_contig5423.1.1 vs. uniprot
Match: F0YJH6_AURAN (Vacuolar protein 8 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJH6_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 5.630e-17
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 1 
Query:  106 AAAAREDAELKSACAAALFNLALDAHNCGAMIESGALPPILRLAHRGTSMQTKVQCMAILQRM-----LAAPELPEQVRSSALVETLVSLSRLDHGPTQHRCVIAMHRLSCWEDGRRLLLADGAAAAQLVRLLSQPSEQVRRGCAATLCNL 543
            AA +   +  K+    AL  LA  + NC  M+ +GAL PI+ L+  G ++ T++QC AIL R        A  L EQ  S   ++ L+ LS L+  PTQ R + A+  +S   + RRL+L +G     LV L ++P EQ+RRGCAAT CN+
Sbjct:  634 AALSASGSNTKAYAIGALAQLAYSSANCRRMLAAGALMPIVELSRSG-NLITRIQCGAILSRFSFQAAYRAHMLSEQRLSEQFLDALLDLSTLEDCPTQQRFIHAVVNMSYEPNARRLMLTNGVLRV-LVDLSNKPDEQIRRGCAATFCNI 782
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5423.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR74_ECTSI1.790e-3552.14Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KQD4_9PHAE3.460e-3350.00Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]
F0YJH6_AURAN5.630e-1739.07Vacuolar protein 8 n=1 Tax=Aureococcus anophageffe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5423contigP-wetherbeei_contig5423:465..1248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LR74
PFAMsArm
Model size551
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.93e-36
EggNOG OGs2C7KE@1|root,2QPXB@2759|Eukaryota
DescriptionArmadillo/beta-catenin-like repeats
Cds size549
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.8720136-CDS-P-wetherbeei_contig5423:464..7851683186810.8720136-CDS-P-wetherbeei_contig5423:464..785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5423 465..785 +
1683186810.884202-CDS-P-wetherbeei_contig5423:1020..12481683186810.884202-CDS-P-wetherbeei_contig5423:1020..1248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5423 1021..1248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5423.1.1prot_P-wetherbeei_contig5423.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5423 465..1248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5423.1.1

>prot_P-wetherbeei_contig5423.1.1 ID=prot_P-wetherbeei_contig5423.1.1|Name=mRNA_P-wetherbeei_contig5423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
YSIPGGSGNSIAAAAASACAAAAATAAAALASEVDAAAAREDAELKSACA
AALFNLALDAHNCGAMIESGALPPILRLAHRGTSMQTKVQCMAILQRMLA
APELPEQVRSSALVETLVSLSRLDHGPTQHRCVIAMHRLSCWEDGRRLLL
ADGAAAAQLVRLLSQPSEQVRRGCAATLCNLG*
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mRNA from alignment at P-wetherbeei_contig5423:465..1248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5423.1.1 ID=mRNA_P-wetherbeei_contig5423.1.1|Name=mRNA_P-wetherbeei_contig5423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=784bp|location=Sequence derived from alignment at P-wetherbeei_contig5423:465..1248+ (Phaeothamnion wetherbeei SAG_119_79)
TATTCAATCCCTGGCGGCAGCGGCAACAGCATCGCGGCGGCCGCCGCATC
TGCATGTGCCGCAGCTGCCGCCACCGCTGCGGCGGCCCTGGCGTCGGAGG
TGGACGCCGCAGCCGCCCGCGAGGATGCCGAGCTTAAGAGCGCATGCGCC
GCGGCCCTGTTTAACCTGGCTCTCGATGCGCACAATTGCGGGGCGATGAT
CGAGAGCGGGGCGCTGCCGCCGATCCTGCGTCTCGCCCACCGAGGCACCT
CGATGCAGACCAAGGTGCAGTGCATGGCGATCCTGCAGCGAATGCTGGCG
GCGCCGGAGCTGCCTGAGCAGGTGAGTAAATGAGAGGAGCGAGGCAGGGC
GGGGCGCGACAGGCCTTTGGTTTTCTCTCTTCTACGCCGTCACATTTATC
ATTTCATGCCTCAGTACTGCCTTCCTTTGTTGATTCGATGCTACTCGCTG
TCCTTTACTTTCTGATTTCTACTACGCACGCGTTTCTGTTTCCTAATTCA
TTTATTGCAACGACGAGCGAACCGCCAAACGGCACAAACAACCTTCCAAA
ATACAGGTTCGCAGCTCGGCGCTGGTGGAAACGCTGGTGTCGCTCTCCCG
CCTCGACCACGGCCCGACCCAGCACCGCTGCGTCATCGCCATGCACCGCC
TCTCGTGCTGGGAGGACGGCCGGCGGCTGCTGCTGGCCGACGGCGCAGCG
GCAGCGCAGCTGGTGCGGCTCCTGAGCCAGCCAAGCGAGCAGGTCCGGCG
GGGATGTGCCGCCACGCTCTGCAACCTCGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5423:465..1248+

>mRNA_P-wetherbeei_contig5423.1.1 ID=mRNA_P-wetherbeei_contig5423.1.1|Name=mRNA_P-wetherbeei_contig5423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig5423:465..1248+ (Phaeothamnion wetherbeei SAG_119_79)
TATTCAATCCCTGGCGGCAGCGGCAACAGCATCGCGGCGGCCGCCGCATC
TGCATGTGCCGCAGCTGCCGCCACCGCTGCGGCGGCCCTGGCGTCGGAGG
TGGACGCCGCAGCCGCCCGCGAGGATGCCGAGCTTAAGAGCGCATGCGCC
GCGGCCCTGTTTAACCTGGCTCTCGATGCGCACAATTGCGGGGCGATGAT
CGAGAGCGGGGCGCTGCCGCCGATCCTGCGTCTCGCCCACCGAGGCACCT
CGATGCAGACCAAGGTGCAGTGCATGGCGATCCTGCAGCGAATGCTGGCG
GCGCCGGAGCTGCCTGAGCAGGTTCGCAGCTCGGCGCTGGTGGAAACGCT
GGTGTCGCTCTCCCGCCTCGACCACGGCCCGACCCAGCACCGCTGCGTCA
TCGCCATGCACCGCCTCTCGTGCTGGGAGGACGGCCGGCGGCTGCTGCTG
GCCGACGGCGCAGCGGCAGCGCAGCTGGTGCGGCTCCTGAGCCAGCCAAG
CGAGCAGGTCCGGCGGGGATGTGCCGCCACGCTCTGCAACCTCGGGTAG
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