mRNA_P-wetherbeei_contig54222.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54222.1.1
Unique NamemRNA_P-wetherbeei_contig54222.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A7L9BL29_9BACT (Cation transporter n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BL29_9BACT)

HSP 1 Score: 136 bits (342), Expect = 1.520e-39
Identity = 59/88 (67.05%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHDHSGMDDSKK 264
            GNCGMCK+RIE  ++  G+K+A W+++TKNL VVYVP K++EQKI ELV++VGHDT+T KA D+VYA+LPFCCLYR+HDHSG+ D KK
Sbjct:   35 GNCGMCKERIEGVLDHNGIKKATWDVATKNLHVVYVPSKVTEQKICELVASVGHDTDTVKAKDEVYAELPFCCLYRDHDHSGIQDGKK 122          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A3B8W0W8_9BACT (Cation-transporting ATPase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3B8W0W8_9BACT)

HSP 1 Score: 129 bits (324), Expect = 6.960e-37
Identity = 56/87 (64.37%), Postives = 75/87 (86.21%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHDHSGMDDSK 261
            GNC MCK+RIE++++ KG+KQA W+  TK LEVVYVP KI+EQ+I E+V++VGHDT+  KA D+VY++LPFCCLYR+HDHSGM D++
Sbjct:   33 GNCTMCKNRIEQALDNKGIKQAVWSPKTKKLEVVYVPSKITEQQIHEIVASVGHDTDKVKAKDEVYSELPFCCLYRDHDHSGMKDNR 119          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A401UAE3_9BACT (Copper chaperone n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401UAE3_9BACT)

HSP 1 Score: 119 bits (299), Expect = 4.710e-33
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHDHSGMDD 255
            GNCGMCK RI+K+++  G+K A W+  TKNL VVY  +K++E +I + ++ VGHDT+  KA D+VYAKLPFCCLYR+HDHSGM+D
Sbjct:   33 GNCGMCKARIQKALDRTGIKTASWDAKTKNLSVVYNSDKLTELEIHKFIAEVGHDTDKAKAKDEVYAKLPFCCLYRDHDHSGMED 117          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A7Y4VKM3_9BACT (ATPase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4VKM3_9BACT)

HSP 1 Score: 114 bits (286), Expect = 3.860e-31
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHDHSG 246
            GNC MCK RIE +++ KG+K+A+W+  TK L VVY  +KI+E+KI E+V+A GHDT+  KA D+ YA LPFCCLYR+HDHSG
Sbjct:   33 GNCSMCKKRIETALDYKGIKKAEWSPKTKELVVVYNSDKITEKKIHEIVAAAGHDTDLVKAKDETYASLPFCCLYRDHDHSG 114          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A7Y5D1V4_9BACT (Heavy-metal-associated domain-containing protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y5D1V4_9BACT)

HSP 1 Score: 113 bits (282), Expect = 1.610e-30
Identity = 48/84 (57.14%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHDHSGMD 252
            GNC MCK+RIE +++ KG+K AKW+  +K L+VVY  +KI+EQ+I E++++VGHDT+  KA D+VY+KLPFCCLYR+H H   D
Sbjct:   32 GNCSMCKNRIETALDQKGIKLAKWDTKSKELQVVYNSDKITEQQIHEIIASVGHDTDKVKAKDEVYSKLPFCCLYRDHGHGPED 115          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A3D5KJW5_9BACT (Cation-transporting ATPase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5KJW5_9BACT)

HSP 1 Score: 104 bits (260), Expect = 4.120e-27
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHDHSGMDDSKKDH 270
            GNC  CK RIE +++ KG+K+A+W+  TK L+VVY   KI+E +I ELV+ VGHDT+  KA D VYA LPFCCLYR+H+ +  D    +H
Sbjct:   33 GNCTQCKKRIETALDHKGIKKAEWSPKTKELQVVYNSNKITELEIHELVANVGHDTDKVKAKDDVYASLPFCCLYRDHEMNEQDHKMMNH 122          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: UPI0019FCA442 (Metal transporter n=1 Tax=Cytophagales bacterium WSM2-2 TaxID=2774202 RepID=UPI0019FCA442)

HSP 1 Score: 103 bits (256), Expect = 1.530e-26
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLYRNHD 237
            GNC MCK RIE +++ KG+K+A+W+  TK L+VVY  +KISE +I  +++ VGHDT+  KA D+ YA LPFCCLYR+H+
Sbjct:   36 GNCSMCKKRIETALDHKGIKKAEWSPKTKELQVVYNSDKISETEIHNIIAKVGHDTDKVKAKDETYAALPFCCLYRDHE 114          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A3D4M308_9BACT (HMA domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D4M308_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 1.880e-24
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLY 225
            GNC MCK+RIE SV+VKGVK A W++ TK + VVY   KI+E+KI  L++A GHDT+   APDKVY KLP CC Y
Sbjct:   34 GNCEMCKERIEASVDVKGVKSAVWDVDTKIIVVVYDKTKITEEKIHGLIAADGHDTDKQTAPDKVYNKLPGCCKY 108          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: UPI001C6A6556 (heavy-metal-associated domain-containing protein n=1 Tax=Chitinophaga rhizophila TaxID=2866212 RepID=UPI001C6A6556)

HSP 1 Score: 97.8 bits (242), Expect = 2.490e-24
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLY 225
            GNCGMCK+R+EK++ V+GVK+A+WN+ +K + V Y P KIS   I++ V+A GHDT+   A D VYAKLP CCLY
Sbjct:   34 GNCGMCKNRVEKALAVEGVKKAEWNVKSKMMTVSYDPAKISSDDIQKKVAAAGHDTDNATASDAVYAKLPGCCLY 108          
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Match: A0A4V2A3J1_9BACT (Cation transporter n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4V2A3J1_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 1.730e-22
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 GNCGMCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGHDTETTKAPDKVYAKLPFCCLY 225
            G CGMCK+RI+K+++++G+ +A W+  TK L + Y P+KIS  +I++ V+AVGHDTE  KA D VY+KLP CC Y
Sbjct:   35 GECGMCKNRIQKALKLEGISEAIWDTETKFLTITYSPDKISNNEIQKKVAAVGHDTEKYKAEDAVYSKLPSCCRY 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54222.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7L9BL29_9BACT1.520e-3967.05Cation transporter n=1 Tax=Flammeovirgaceae bacter... [more]
A0A3B8W0W8_9BACT6.960e-3764.37Cation-transporting ATPase n=1 Tax=Cytophagales ba... [more]
A0A401UAE3_9BACT4.710e-3360.00Copper chaperone n=1 Tax=Chryseotalea sanaruensis ... [more]
A0A7Y4VKM3_9BACT3.860e-3160.98ATPase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2... [more]
A0A7Y5D1V4_9BACT1.610e-3057.14Heavy-metal-associated domain-containing protein n... [more]
A0A3D5KJW5_9BACT4.120e-2753.33Cation-transporting ATPase n=1 Tax=Cytophagales ba... [more]
UPI0019FCA4421.530e-2655.70Metal transporter n=1 Tax=Cytophagales bacterium W... [more]
A0A3D4M308_9BACT1.880e-2461.33HMA domain-containing protein n=1 Tax=Bacteroidete... [more]
UPI001C6A65562.490e-2457.33heavy-metal-associated domain-containing protein n... [more]
A0A4V2A3J1_9BACT1.730e-2253.33Cation transporter n=1 Tax=Chitinophagaceae bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54222contigP-wetherbeei_contig54222:257..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122621.ATZA01000045_gene3545
PFAMsHMA
Model size276
Max annot lvl976|Bacteroidetes
KEGG koko:K08364
KEGG TC1.A.72.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.86e-19
EggNOG OGsCOG2608@1|root,COG2608@2|Bacteria,4NUTQ@976|Bacteroidetes,1ITC9@117747|Sphingobacteriia
DescriptionHeavy-metal-associated domain
Cds size264
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.754663-CDS-P-wetherbeei_contig54222:256..5201683186810.754663-CDS-P-wetherbeei_contig54222:256..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54222 257..520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.7681339-UTR-P-wetherbeei_contig54222:520..5321683186810.7681339-UTR-P-wetherbeei_contig54222:520..532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54222 521..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54222.1.1prot_P-wetherbeei_contig54222.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54222 257..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54222.1.1

>prot_P-wetherbeei_contig54222.1.1 ID=prot_P-wetherbeei_contig54222.1.1|Name=mRNA_P-wetherbeei_contig54222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MCKDRIEKSVEVKGVKQAKWNISTKNLEVVYVPEKISEQKIRELVSAVGH
DTETTKAPDKVYAKLPFCCLYRNHDHSGMDDSKKDHN*
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mRNA from alignment at P-wetherbeei_contig54222:257..532-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54222.1.1 ID=mRNA_P-wetherbeei_contig54222.1.1|Name=mRNA_P-wetherbeei_contig54222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig54222:257..532- (Phaeothamnion wetherbeei SAG_119_79)
GGCAACTGCGGAATGTGTAAAGATCGCATTGAAAAATCAGTTGAAGTAAA AGGTGTTAAGCAGGCAAAGTGGAACATTTCAACAAAAAATCTTGAAGTTG TTTACGTCCCTGAAAAGATCAGTGAACAGAAAATCCGGGAATTAGTTTCT GCTGTTGGCCACGATACAGAAACCACTAAAGCTCCTGATAAAGTTTACGC AAAACTTCCGTTTTGTTGTCTCTACCGCAACCACGATCACAGCGGGATGG ATGATAGCAAGAAAGATCACAACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54222:257..532-

>mRNA_P-wetherbeei_contig54222.1.1 ID=mRNA_P-wetherbeei_contig54222.1.1|Name=mRNA_P-wetherbeei_contig54222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54222:257..532- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTAAAGATCGCATTGAAAAATCAGTTGAAGTAAAAGGTGTTAAGCA
GGCAAAGTGGAACATTTCAACAAAAAATCTTGAAGTTGTTTACGTCCCTG
AAAAGATCAGTGAACAGAAAATCCGGGAATTAGTTTCTGCTGTTGGCCAC
GATACAGAAACCACTAAAGCTCCTGATAAAGTTTACGCAAAACTTCCGTT
TTGTTGTCTCTACCGCAACCACGATCACAGCGGGATGGATGATAGCAAGA
AAGATCACAACTAA
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