mRNA_P-wetherbeei_contig5418.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5418.2.1
Unique NamemRNA_P-wetherbeei_contig5418.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5418.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5418contigP-wetherbeei_contig5418:1792..2880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size679
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.8043818-CDS-P-wetherbeei_contig5418:1791..20931683186809.8043818-CDS-P-wetherbeei_contig5418:1791..2093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5418 1792..2093 +
1683186809.8142478-CDS-P-wetherbeei_contig5418:2272..24111683186809.8142478-CDS-P-wetherbeei_contig5418:2272..2411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5418 2273..2411 +
1683186809.823238-CDS-P-wetherbeei_contig5418:2510..25401683186809.823238-CDS-P-wetherbeei_contig5418:2510..2540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5418 2511..2540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.8317993-UTR-P-wetherbeei_contig5418:2540..26601683186809.8317993-UTR-P-wetherbeei_contig5418:2540..2660Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5418 2541..2660 +
1683186809.8432164-UTR-P-wetherbeei_contig5418:2792..28801683186809.8432164-UTR-P-wetherbeei_contig5418:2792..2880Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5418 2793..2880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5418.2.1prot_P-wetherbeei_contig5418.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5418 1792..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5418.2.1

>prot_P-wetherbeei_contig5418.2.1 ID=prot_P-wetherbeei_contig5418.2.1|Name=mRNA_P-wetherbeei_contig5418.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
REPLLRFAWLQRSSHTLQSSDEAGRQTAGREKEGAGSRLEPSSYGICFAI
PSRSFDSHRRPPLRQALAVASRWRLPRGRGIFQHFRRSLVFRAVKVSLVT
RMGMKASGEEAVFDEMMASTPAADTGGHDETAAAKVSPTSPAGKNLWMSI
WPGQAP*
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mRNA from alignment at P-wetherbeei_contig5418:1792..2880+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5418.2.1 ID=mRNA_P-wetherbeei_contig5418.2.1|Name=mRNA_P-wetherbeei_contig5418.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig5418:1792..2880+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGAGCCTCTCCTTCGCTTCGCTTGGCTTCAGCGGTCTTCACACACATT
GCAATCATCGGATGAAGCCGGGCGGCAGACAGCTGGTAGAGAGAAAGAAG
GCGCAGGTTCAAGACTCGAACCATCTAGCTACGGAATCTGTTTCGCCATT
CCGTCTCGAAGCTTCGACTCTCATCGAAGGCCGCCGTTGCGGCAAGCGTT
GGCGGTTGCCTCGCGTTGGCGCTTGCCTCGCGGGCGCGGCATCTTTCAAC
ATTTTAGACGAAGTCTCGTGTTCCGCGCTGTGAAGGTTTCTCTTGTCACG
AGGTAAGGTAAGAAGTATTGGCTGCTACTATTAGTCCTGATCGCGTCTGG
GCGCTGCTTGCAACCATCACTCTTGACGTCGGTACCTCCTCGCTTTTGAC
GTTGCATGCCGAAGCTGGTCCTGACGCTCTCTCTCCGATATTCGCTTCCA
ACTCTTCAACCTCCCTACTCTTGACGCCCAGAATGGGCATGAAAGCCTCA
GGAGAAGAAGCCGTATTCGACGAGATGATGGCGTCGACTCCGGCGGCTGA
CACTGGGGGGCACGATGAAACAGCGGCCGCCAAAGTATCGCCTACAAGCC
CCGCCGGCAAGAACCTCTGGGTAAGTTAGCAGCAGTTAAGTTGTATGCGT
TCACAACTTAACTATGCCCAACCTTCGCTACAGTTCTCGTTCGCCCTTGC
TCGTTCCCGCTTCCCACAGATGAGCATTTGGCCGGGCCAGGCCCCCTGAC
GCACGTCGGACGGCGTCTTTTGGCGGCGACGGGAGAAAGAGCCGACAAGG
AGATCGCCTGGAGGTTTTGAGCCTCGCGAAACCTCCACCATCGCCATCTC
CTTCCCCTCCGGCCGCAACGTACGGGAAGAAGTAGAAGCTAGTAGCTCGT
TGCTGGTACTGGGATGAAAGCTGAGAGGTGGTCGTAGAAGTACCTGAAAT
CTTGCACCCAAAACATCCCTTTTCCGCTCTTCTTATTTTTTCTGCCCGCA
GGCCTTTGTGGGCATTGTCCAATTAGTGATGCGACTCAAATCCGAGGACG
AACTGGCCGGATTATTGAGTCACGAAATCTCTCACGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5418:1792..2880+

>mRNA_P-wetherbeei_contig5418.2.1 ID=mRNA_P-wetherbeei_contig5418.2.1|Name=mRNA_P-wetherbeei_contig5418.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig5418:1792..2880+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGAGCCTCTCCTTCGCTTCGCTTGGCTTCAGCGGTCTTCACACACATT
GCAATCATCGGATGAAGCCGGGCGGCAGACAGCTGGTAGAGAGAAAGAAG
GCGCAGGTTCAAGACTCGAACCATCTAGCTACGGAATCTGTTTCGCCATT
CCGTCTCGAAGCTTCGACTCTCATCGAAGGCCGCCGTTGCGGCAAGCGTT
GGCGGTTGCCTCGCGTTGGCGCTTGCCTCGCGGGCGCGGCATCTTTCAAC
ATTTTAGACGAAGTCTCGTGTTCCGCGCTGTGAAGGTTTCTCTTGTCACG
AGAATGGGCATGAAAGCCTCAGGAGAAGAAGCCGTATTCGACGAGATGAT
GGCGTCGACTCCGGCGGCTGACACTGGGGGGCACGATGAAACAGCGGCCG
CCAAAGTATCGCCTACAAGCCCCGCCGGCAAGAACCTCTGGATGAGCATT
TGGCCGGGCCAGGCCCCCTGA
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