mRNA_P-wetherbeei_contig54170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54170.1.1
Unique NamemRNA_P-wetherbeei_contig54170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: UPI001C3C5AD5 (phosphodiester glycosidase family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C5AD5)

HSP 1 Score: 225 bits (573), Expect = 7.160e-68
Identity = 111/157 (70.70%), Postives = 133/157 (84.71%), Query Frame = 1
Query:    1 QVAPGIGYQRLVEGGGEVVQIIRAAPSPRVSLAPVLAGGSPTQRGSLAGAVAARLDAGAVAGINGDFFNTTTNDPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTGYGALTTP 471
            +VAPG+GYQR+V+G G+VV ++RA   PRVSLAPVL GGSP +RGSL GA++ARL +GAVAGINGDFF+ TTNDPSGV L GG+L+HEPEASRSALV+ PGGGLDAV+L++QGRFQA DP GA  +  RTF G+NRPAKRGSETI+YT   G+ TTP
Sbjct:   37 EVAPGVGYQRIVQGRGQVVHVVRAPLGPRVSLAPVLLGGSPVRRGSLTGAMSARLGSGAVAGINGDFFSYTTNDPSGVFLAGGDLVHEPEASRSALVMLPGGGLDAVVLAMQGRFQAIDPAGATTFVPRTFQGVNRPAKRGSETIVYTPALGSATTP 193          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: UPI001C3E245F (phosphodiester glycosidase family protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E245F)

HSP 1 Score: 186 bits (471), Expect = 7.380e-53
Identity = 96/158 (60.76%), Postives = 120/158 (75.95%), Query Frame = 1
Query:    1 QVAPGIGYQRLVEGGGEVVQIIRAAPSPRVSLAPVLAGGSPTQRGSLAGAVAARLDAGAVAGINGDFFNTTTNDPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDP-TGAVQYPIRTFSGINRPAKRGSETILYTTGYGALTTP 471
            +VAPGIGYQRL   GG+VV ++RAAPSPRV+LAP LAG SP +RG+L  A+ AR++AGAVAG+NGDFF+  T+ PSGV +  GEL+ EPEASRSALVL   G ++AV L+LQGR+Q  DP TGA   P R F+G+NR   R  ET L+T+ YGA+ TP
Sbjct:   42 EVAPGIGYQRLERDGGQVVHVLRAAPSPRVTLAPALAGDSPIRRGALTRAIGARMNAGAVAGVNGDFFSYATSSPSGVFMQAGELVREPEASRSALVLLGDGNIEAVALALQGRYQPLDPATGAAAAPPRAFTGVNRAPARNGETTLFTSAYGAVATP 199          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: A0A537ZV74_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZV74_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 1.340e-7
Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 1
Query:    1 QVAPGIGYQ-RLVEGGGEVVQIIRAAPSPRVSLAPVLAGGSPTQR---GSLAGAVAARLDAGAVAGINGDFFNTTTNDPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTGYGALTTP 471
            Q+ PG+ Y  R+++G  +   +    P    SL P+L+  + T R    S+   VA+++    + G+NGDFFN     PSG+L+ GG + H+P  +RSAL +   G L    +     +  F     + YP+   S +N P    S   L+T  +GA T P
Sbjct:   25 QIMPGVTYDHRVLKGPVQAYVVTAPKPGGLYSLTPLLSNDTITGRETVSSMERRVASQMT---MIGVNGDFFNWVGGWPSGLLMRGGVIEHQPADNRSALGIDTSGTLHVDRVPFNASWSGFS---TIFYPL---SQLNEPPHANSA-ALFTPVWGAATPP 175          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: A0A538DRZ6_9ACTN (Uncharacterized protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DRZ6_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 2.120e-6
Identity = 46/158 (29.11%), Postives = 73/158 (46.20%), Query Frame = 1
Query:    1 QVAPGIGYQ-RLVEGGGEVVQIIRAAPSPRVSLAPVLAGGSPTQRGSLAGAVAARLDAGAVAGINGDFFNTTTNDPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTGYGALTTP 471
            Q+ PG+ Y  R+++G      +    P    SL P+L+  + T R +++             GINGDFFN     PSG+L+ GG + H+P  +RSA+ +   G L    L     +  F     ++YP+     +N P    S + L+T  +G  T P
Sbjct:   25 QIMPGVTYDHRVLKGPVHAYVVTAPKPGGLYSLTPLLSNDTITGRETVSSMERRVSGQMTTIGINGDFFNWIGGWPSGLLMRGGTVEHQPADNRSAVGIDSAGNLHVDKLPFNASWWGFS---TIRYPVAQ---LNEPPHANSAS-LFTPVWGDATPP 175          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: UPI001FE15BB9 (phosphodiester glycosidase family protein n=1 Tax=Herbidospora cretacea TaxID=28444 RepID=UPI001FE15BB9)

HSP 1 Score: 53.9 bits (128), Expect = 1.720e-5
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  169 AGAVAGINGDFFNTTTN-----DPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTGYGALT 465
            AGA+AG+NG FF+  T      DP+G+ ++GG L+ E    R+ +VL    G  A I  L+         G  Q P+   +G+NR AK G E +LYT  +GA T
Sbjct:  159 AGAIAGVNGGFFDIHTGAAYRGDPTGISVVGGRLLSEAVEGRTGVVLK---GRSARITELKSSVTV--AAGGAQAPV---AGVNRVAKDG-ELVLYTEEFGAST 253          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: A0A7W9IEM5_9ACTN (Exopolysaccharide biosynthesis protein n=2 Tax=Streptosporangium becharense TaxID=1816182 RepID=A0A7W9IEM5_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 1.720e-5
Identity = 45/105 (42.86%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  169 AGAVAGINGDFFNTTT-----NDPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRT-FSGINRPAKRGSETILYTTGYGALT 465
            AGA+AG+NG FFN  T      DP GV ++GG L+ E    RSALV+T      A I  L+    A    GA     RT   GINR A    E +LYT  +GA T
Sbjct:  158 AGAIAGVNGGFFNIHTAKALQGDPVGVSVVGGRLLSEGIPGRSALVITDS--RKARITELKTMITAISSDGA-----RTEVKGINRAAA-AEELVLYTEEFGAKT 254          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: A0A1G7RR05_9ACTN (NAGPA domain-containing protein n=1 Tax=Sinosporangium album TaxID=504805 RepID=A0A1G7RR05_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-5
Identity = 42/103 (40.78%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  172 GAVAGINGDFFNTTTN-----DPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTGYGALT 465
            GA+AGING FFN  T+     +P G+ ++GG L+ E  A RSALV+    G  A I  L+         G    P+    G+NR AK   E +LYT  YGA T
Sbjct:  202 GAIAGINGGFFNIHTSPALRGEPVGISVVGGRLLSEAVAGRSALVVQ---GRKAKITELKSGMSVSSDNGN-HSPVH---GVNRAAKF-DELVLYTAEYGAKT 296          
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Match: UPI0012F874AA (phosphodiester glycosidase family protein n=1 Tax=Nonomuraea typhae TaxID=2603600 RepID=UPI0012F874AA)

HSP 1 Score: 52.4 bits (124), Expect = 6.000e-5
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  169 AGAVAGINGDFFN-----TTTNDPSGVLLLGGELIHEPEASRSALVLTPGGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTGYGALT 465
            AGA+A ING FFN         DP G  ++ G+L+ EP A R+A+VL    G  A I  L+    A    G  + P+   +G+NRPA    E +LYT  +GA T
Sbjct:  203 AGALAAINGGFFNIHAPQALRGDPLGASVVAGKLLSEPVAGRAAIVLR---GRKATITELKSTITARSQDGQ-RLPV---NGVNRPAAV-DELVLYTEEWGAKT 298          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001C3C5AD57.160e-6870.70phosphodiester glycosidase family protein n=1 Tax=... [more]
UPI001C3E245F7.380e-5360.76phosphodiester glycosidase family protein n=1 Tax=... [more]
A0A537ZV74_9ACTN1.340e-731.06Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A538DRZ6_9ACTN2.120e-629.11Uncharacterized protein n=2 Tax=Actinomycetia bact... [more]
UPI001FE15BB91.720e-538.46phosphodiester glycosidase family protein n=1 Tax=... [more]
A0A7W9IEM5_9ACTN1.720e-542.86Exopolysaccharide biosynthesis protein n=2 Tax=Str... [more]
A0A1G7RR05_9ACTN1.760e-540.78NAGPA domain-containing protein n=1 Tax=Sinosporan... [more]
UPI0012F874AA6.000e-539.42phosphodiester glycosidase family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54170contigP-wetherbeei_contig54170:43..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28444.JODQ01000001_gene2823
PFAMsNAGPA,SPOR
Model size474
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.56e-06
EggNOG OGsCOG4632@1|root,COG4632@2|Bacteria,2GNTM@201174|Actinobacteria,4EFFX@85012|Streptosporangiales
DescriptionPhosphodiester glycosidase
Cds size474
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.7658024-CDS-P-wetherbeei_contig54170:42..5161683186809.7658024-CDS-P-wetherbeei_contig54170:42..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54170 43..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54170.1.1prot_P-wetherbeei_contig54170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54170 43..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54170.1.1

>prot_P-wetherbeei_contig54170.1.1 ID=prot_P-wetherbeei_contig54170.1.1|Name=mRNA_P-wetherbeei_contig54170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
QVAPGIGYQRLVEGGGEVVQIIRAAPSPRVSLAPVLAGGSPTQRGSLAGA
VAARLDAGAVAGINGDFFNTTTNDPSGVLLLGGELIHEPEASRSALVLTP
GGGLDAVILSLQGRFQAFDPTGAVQYPIRTFSGINRPAKRGSETILYTTG
YGALTTPT
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mRNA from alignment at P-wetherbeei_contig54170:43..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54170.1.1 ID=mRNA_P-wetherbeei_contig54170.1.1|Name=mRNA_P-wetherbeei_contig54170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig54170:43..516+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGCCCCGGGCATCGGATACCAGCGGCTGGTGGAGGGCGGCGGCGA GGTGGTGCAGATCATCCGGGCCGCGCCCTCGCCCCGGGTGTCCCTGGCGC CCGTCCTCGCCGGAGGCTCGCCCACCCAGCGCGGGTCGCTCGCCGGAGCG GTGGCGGCGCGGCTCGACGCCGGCGCCGTCGCAGGCATCAACGGCGACTT CTTCAACACCACCACCAACGACCCGAGCGGCGTGCTGCTGCTGGGCGGCG AGCTGATCCACGAGCCCGAGGCCAGCCGATCCGCCCTCGTGCTGACGCCG GGCGGGGGCCTCGACGCCGTCATCCTGTCCCTCCAGGGCCGCTTCCAGGC GTTCGACCCGACGGGCGCGGTGCAGTATCCGATCCGCACGTTCAGCGGCA TCAACCGTCCCGCCAAGCGCGGCTCCGAGACGATCCTCTACACCACCGGC TACGGGGCTCTCACCACCCCCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54170:43..516+

>mRNA_P-wetherbeei_contig54170.1.1 ID=mRNA_P-wetherbeei_contig54170.1.1|Name=mRNA_P-wetherbeei_contig54170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig54170:43..516+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGCCCCGGGCATCGGATACCAGCGGCTGGTGGAGGGCGGCGGCGA
GGTGGTGCAGATCATCCGGGCCGCGCCCTCGCCCCGGGTGTCCCTGGCGC
CCGTCCTCGCCGGAGGCTCGCCCACCCAGCGCGGGTCGCTCGCCGGAGCG
GTGGCGGCGCGGCTCGACGCCGGCGCCGTCGCAGGCATCAACGGCGACTT
CTTCAACACCACCACCAACGACCCGAGCGGCGTGCTGCTGCTGGGCGGCG
AGCTGATCCACGAGCCCGAGGCCAGCCGATCCGCCCTCGTGCTGACGCCG
GGCGGGGGCCTCGACGCCGTCATCCTGTCCCTCCAGGGCCGCTTCCAGGC
GTTCGACCCGACGGGCGCGGTGCAGTATCCGATCCGCACGTTCAGCGGCA
TCAACCGTCCCGCCAAGCGCGGCTCCGAGACGATCCTCTACACCACCGGC
TACGGGGCTCTCACCACCCCCACG
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