mRNA_P-wetherbeei_contig54169.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54169.1.1
Unique NamemRNA_P-wetherbeei_contig54169.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54169.1.1 vs. uniprot
Match: A0A2E0VVR9_9BACT (Uncharacterized protein n=1 Tax=Saprospirales bacterium TaxID=2026790 RepID=A0A2E0VVR9_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 9.160e-8
Identity = 39/129 (30.23%), Postives = 61/129 (47.29%), Query Frame = 1 
Query:    1 NSGGCTETASITLVYSGGPCILVRRASPNVDEPGNDLD-----ESKEFTTHPNPVNQTLTVQLP-VAVKKSTSVVLYDTFGKIAHTSEFKAGEKSKT--ISTAEIANGIYMLEVSAPNGNLIRKVIISH 363
            N+ GC   A I     GG  I++         PGN +      E    +  PNP    +T+ L  +AV   T V+LYD FG++AHT E   G++  T  I   E+  G+Y + +   +  L+ ++II +
Sbjct: 1075 NASGCQSVADIGNSCGGGSIIIL---------PGNGIAFGETAEQPRMSLFPNPATSEVTILLEGLAVTNDTKVLLYDQFGRLAHTLELAEGQEVATLKIDANELPTGVYQVVLKTSSTQLVERLIIKN 1194
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BLAST of mRNA_P-wetherbeei_contig54169.1.1 vs. uniprot
Match: A0A136NKY4_9BACT (Adhesin AidA-related protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A136NKY4_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.290e-7
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:    1 NSGGCTETASITLVYSGGPCILVRRASPNVDEPGNDLDESKEFTTHPNPVNQTLTVQLPVAVKKSTSVVLYDTFGK--IAHTSEF-KAGEKSKTISTAEIANGIYMLEVSAPNGNLIRKVIISH 363
            NS   T  A IT+V   GP  L            N++D + + +T+PNP+N   TVQ  ++ K   S+ L D  G+  I H     +AG +  TI+ + +A+GIY+L+++    N   KV +SH
Sbjct:  867 NSPVTTNNAVITMV---GPTGL------------NEIDNTAQLSTYPNPLNGLSTVQFILSNKAKVSLALMDATGRTIIQHPEAMMQAGLQKTTINASTLADGIYLLQLTVDGKNSFMKVAVSH 975
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BLAST of mRNA_P-wetherbeei_contig54169.1.1 vs. uniprot
Match: A0A434A0Q8_9FLAO (T9SS C-terminal target domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A434A0Q8_9FLAO)

HSP 1 Score: 54.7 bits (130), Expect = 3.530e-6
Identity = 28/97 (28.87%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   79 SPNVDEPGNDLDESKEFTTHPNPVNQTLTVQLPVAVKKSTSVVLYDTFGKIAHTSEFKA----GEKSKTISTAEIANGIYMLEVSAPNGNLIRKVII 357
            SPN+        E+K+F  +PNPV +T+ + +P    +   V LYD  GK+ ++ +  A    G  S +I++ ++++G+Y+L++   NG +    I+
Sbjct:  452 SPNLGTADLIQKEAKDFRVYPNPVKETINIDMPFVDAREYKVALYDLQGKLIYSEDASAILLSGTDSFSINSNKLSSGLYVLKIVDKNGEIFSAKIV 548
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E0VVR9_9BACT9.160e-830.23Uncharacterized protein n=1 Tax=Saprospirales bact... [more]
A0A136NKY4_9BACT2.290e-733.06Adhesin AidA-related protein n=2 Tax=unclassified ... [more]
A0A434A0Q8_9FLAO3.530e-628.87T9SS C-terminal target domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54169contigP-wetherbeei_contig54169:79..444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313421.JHBV01000042_gene3297
PFAMsASH,CHU_C,LTD,fn3
Model size366
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.11e-08
EggNOG OGsCOG2353@1|root,COG2356@1|root,COG2374@1|root,COG2353@2|Bacteria,COG2356@2|Bacteria,COG2374@2|Bacteria
Descriptiondeoxyribonuclease I activity
Cds size366
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.64999-CDS-P-wetherbeei_contig54169:78..4441683186809.64999-CDS-P-wetherbeei_contig54169:78..444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54169 79..444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54169.1.1prot_P-wetherbeei_contig54169.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54169 79..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54169.1.1

>prot_P-wetherbeei_contig54169.1.1 ID=prot_P-wetherbeei_contig54169.1.1|Name=mRNA_P-wetherbeei_contig54169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
NSGGCTETASITLVYSGGPCILVRRASPNVDEPGNDLDESKEFTTHPNPV
NQTLTVQLPVAVKKSTSVVLYDTFGKIAHTSEFKAGEKSKTISTAEIANG
IYMLEVSAPNGNLIRKVIISH*
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mRNA from alignment at P-wetherbeei_contig54169:79..444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54169.1.1 ID=mRNA_P-wetherbeei_contig54169.1.1|Name=mRNA_P-wetherbeei_contig54169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig54169:79..444+ (Phaeothamnion wetherbeei SAG_119_79)
AATTCAGGAGGCTGTACAGAAACAGCAAGTATTACTCTTGTCTACTCTGG
AGGCCCTTGCATATTAGTTCGTAGAGCCAGTCCAAATGTTGATGAACCAG
GAAATGATTTGGATGAATCAAAAGAATTTACAACGCATCCTAACCCGGTT
AATCAAACCTTAACGGTTCAATTACCGGTTGCAGTTAAAAAATCGACTTC
AGTGGTGCTGTATGATACATTTGGAAAGATCGCCCATACATCAGAGTTTA
AAGCAGGAGAGAAAAGCAAAACTATTTCAACAGCTGAAATCGCGAATGGT
ATCTATATGCTGGAGGTGTCTGCTCCCAACGGGAATTTGATCCGGAAAGT
AATCATAAGTCATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54169:79..444+

>mRNA_P-wetherbeei_contig54169.1.1 ID=mRNA_P-wetherbeei_contig54169.1.1|Name=mRNA_P-wetherbeei_contig54169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig54169:79..444+ (Phaeothamnion wetherbeei SAG_119_79)
AATTCAGGAGGCTGTACAGAAACAGCAAGTATTACTCTTGTCTACTCTGG
AGGCCCTTGCATATTAGTTCGTAGAGCCAGTCCAAATGTTGATGAACCAG
GAAATGATTTGGATGAATCAAAAGAATTTACAACGCATCCTAACCCGGTT
AATCAAACCTTAACGGTTCAATTACCGGTTGCAGTTAAAAAATCGACTTC
AGTGGTGCTGTATGATACATTTGGAAAGATCGCCCATACATCAGAGTTTA
AAGCAGGAGAGAAAAGCAAAACTATTTCAACAGCTGAAATCGCGAATGGT
ATCTATATGCTGGAGGTGTCTGCTCCCAACGGGAATTTGATCCGGAAAGT
AATCATAAGTCATTGA
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