mRNA_P-wetherbeei_contig5416.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5416.3.1
Unique NamemRNA_P-wetherbeei_contig5416.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: A0A1X7SKD3_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SKD3_AMPQE)

HSP 1 Score: 81.6 bits (200), Expect = 1.120e-16
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  263 EEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFL 514
            +E+K FQ  P++    H+   +DPL WW+ +   FP IA++AR  LCVPATSVPSER+FS+AGL +  +R  LT  + + LIFL
Sbjct:   58 DELKLFQIEPQI----HHD--SDPLEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFL 135          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: A0A8M2B8W1_DANRE (zinc finger BED domain-containing protein 4 isoform X3 n=2 Tax=Danio rerio TaxID=7955 RepID=A0A8M2B8W1_DANRE)

HSP 1 Score: 81.3 bits (199), Expect = 1.690e-15
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  263 EEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFLR 517
            EEV  ++++P L ++       +PL WW+ +  +FP++AKLA+C L VPATSVPSER+FS+AG  VT +R  L+  +V+ ++FL+
Sbjct:  172 EEVACYRQVPTLPVE------LNPLAWWKDNESQFPHVAKLAKCYLGVPATSVPSERVFSTAGDIVTAQRSSLSSENVDIMVFLK 250          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-15
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  332 PLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFL 514
            P  WW+ + + FP +AKLAR  LC+PATSVPSER+FS+AGLTVT+ R RLT   V  LIFL
Sbjct:  107 PTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFL 167          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: UPI000B4580AC (zinc finger BED domain-containing protein 1-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B4580AC)

HSP 1 Score: 82.4 bits (202), Expect = 3.650e-15
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  257 AMEEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFLR 517
            A +EV  ++ +  L M        DPL WW+ H L+FP ++ +A+C LC+PATSVPSER+FS+AG  VT +R +L+   V+ LIFL+
Sbjct:  566 ASDEVACYKEMELLPMDQ------DPLNWWKMHELQFPLLSLIAKCRLCIPATSVPSERIFSTAGDIVTAQRSQLSPDVVDKLIFLK 646          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: UPI0010A08E72 (zinc finger BED domain-containing protein 1-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI0010A08E72)

HSP 1 Score: 82.0 bits (201), Expect = 4.490e-15
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  257 AMEEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFL 514
            A EE+K +   P LS+ +      DPL WWR     FP +AKLA+C LC+P TSV +ER+FS+AG  VT +R  LT   V+ L+FL
Sbjct:  399 AEEEMKKYLETPSLSLSE------DPLTWWRSQETVFPLLAKLAKCYLCIPGTSVAAERVFSTAGDIVTAQRSMLTPEHVDQLLFL 478          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: A0A1X7T780_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T780_AMPQE)

HSP 1 Score: 81.6 bits (200), Expect = 6.620e-15
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  263 EEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFL 514
            +E+K FQ  P++    H+   +DPL WW+ +   FP IA++AR  LCVPATSVPSER+FS+AGL +  +R  LT  + + LIFL
Sbjct:  511 DELKLFQIEPQI----HHD--SDPLEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFL 588          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: UPI001E1DF359 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF359)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-14
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  248 ELVAMEEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFLR 517
            EL  ME ++ ++  P +S+ D+      PL WW++  L FP ++KLA+C+LC+PATSVPSER+FS+AG  +T +R  L    V+ LIFL+
Sbjct:  428 ELAQMEVIQ-YKSEPPVSLNDN------PLQWWKQRELRFPFLSKLAKCLLCIPATSVPSERVFSTAGDILTAQRASLKAKHVDKLIFLK 510          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: UPI001E1D160A (zinc finger BED domain-containing protein 4-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D160A)

HSP 1 Score: 79.3 bits (194), Expect = 1.470e-14
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  257 AMEEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFL 514
            A+ E++ +   PR+S  +      DPL WW++    FPN++K+A+ +LCVPATSVPSERLFS AG  ++QR+  L D +V  ++FL
Sbjct:  211 AIIELRRYFEEPRISRIE------DPLSWWKKKAPIFPNLSKVAKRILCVPATSVPSERLFSKAGELISQRQSTLKDKNVNMILFL 290          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: UPI0014901E5B (zinc finger BED domain-containing protein 1-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI0014901E5B)

HSP 1 Score: 76.3 bits (186), Expect = 1.520e-14
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  329 DPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFL 514
            DPL+WWR+H + FP +AKLA+  LCVPATS PSER+FS++G  VT +R  L    V+ L+FL
Sbjct:   79 DPLVWWRQHEVNFPLVAKLAKKYLCVPATSSPSERVFSASGNIVTCKRSCLKPERVDQLVFL 140          
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Match: A0A1A8IFU3_NOTKU (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8IFU3_NOTKU)

HSP 1 Score: 75.1 bits (183), Expect = 1.780e-14
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  254 VAMEEVKAFQRIPRLSMQDHNGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVTQRRGRLTDHSVETLIFLR 517
            VA EE+  ++    + + D+      PL WW+ HH  +P+++KLA C L VP TSVPSER+FS+AG  VT  R  L+   V+ LIFL+
Sbjct:   22 VADEEINLYRLAGCIHIDDN------PLRWWKEHHSLYPHLSKLALCYLVVPGTSVPSERVFSTAGDIVTASRSVLSAEHVDILIFLK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5416.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7SKD3_AMPQE1.120e-1648.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A8M2B8W1_DANRE1.690e-1544.71zinc finger BED domain-containing protein 4 isofor... [more]
UPI0007B8209D2.600e-1562.30zinc finger BED domain-containing protein 1-like n... [more]
UPI000B4580AC3.650e-1545.98zinc finger BED domain-containing protein 1-like n... [more]
UPI0010A08E724.490e-1547.67zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7T780_AMPQE6.620e-1548.81BED-type domain-containing protein n=1 Tax=Amphime... [more]
UPI001E1DF3591.170e-1445.56E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
UPI001E1D160A1.470e-1445.35zinc finger BED domain-containing protein 4-like n... [more]
UPI0014901E5B1.520e-1456.45zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8IFU3_NOTKU1.780e-1444.32Dimer_Tnp_hAT domain-containing protein n=2 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5416contigP-wetherbeei_contig5416:3180..3696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size517
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.08e-17
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size354
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.5398774-CDS-P-wetherbeei_contig5416:3179..35331683186809.5398774-CDS-P-wetherbeei_contig5416:3179..3533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5416 3180..3533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.555276-UTR-P-wetherbeei_contig5416:3533..36961683186809.555276-UTR-P-wetherbeei_contig5416:3533..3696Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5416 3534..3696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5416.3.1prot_P-wetherbeei_contig5416.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5416 3180..3533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5416.3.1

>prot_P-wetherbeei_contig5416.3.1 ID=prot_P-wetherbeei_contig5416.3.1|Name=mRNA_P-wetherbeei_contig5416.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MAAAEEESSSNSMSCCDETDAAAASGRFELVAMEEVKAFQRIPRLSMQDH
NGEWNDPLLWWRRHHLEFPNIAKLARCVLCVPATSVPSERLFSSAGLTVT
QRRGRLTDHSVETLIFLR
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mRNA from alignment at P-wetherbeei_contig5416:3180..3696-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5416.3.1 ID=mRNA_P-wetherbeei_contig5416.3.1|Name=mRNA_P-wetherbeei_contig5416.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=517bp|location=Sequence derived from alignment at P-wetherbeei_contig5416:3180..3696- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAGCAAGACGGTGATCAACAGGCGGCTTTGAAAAGGCAGAGTCGCAG GTGGAGCCGCAGGAGGCACCGAGGAGGGTGGCGTCCTGGCGGCAGCAGCG CCGGTGAGGCGTCGCAAACGTCACTGGTGAGGCGGCGGCATGCGGGTTTT CTAGCGCAGAGCGATGGCGGCGGCAGAGGAGGAGAGCAGCAGCAACAGCA TGTCTTGCTGTGATGAGACGGATGCCGCCGCTGCTTCGGGCCGTTTTGAA CTTGTGGCGATGGAGGAGGTGAAAGCTTTCCAGCGCATTCCACGGCTCAG CATGCAGGACCATAATGGCGAGTGGAACGACCCTCTGCTGTGGTGGCGGC GCCACCACCTGGAGTTCCCGAACATCGCCAAGTTGGCGCGTTGCGTGCTC TGCGTGCCAGCGACGTCAGTGCCGTCAGAACGGCTGTTCAGCTCTGCGGG GCTGACAGTGACGCAACGGCGGGGCCGGCTGACTGACCATTCTGTTGAGA CGCTGATTTTCTTGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5416:3180..3696-

>mRNA_P-wetherbeei_contig5416.3.1 ID=mRNA_P-wetherbeei_contig5416.3.1|Name=mRNA_P-wetherbeei_contig5416.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig5416:3180..3696- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGCAGAGGAGGAGAGCAGCAGCAACAGCATGTCTTGCTGTGA
TGAGACGGATGCCGCCGCTGCTTCGGGCCGTTTTGAACTTGTGGCGATGG
AGGAGGTGAAAGCTTTCCAGCGCATTCCACGGCTCAGCATGCAGGACCAT
AATGGCGAGTGGAACGACCCTCTGCTGTGGTGGCGGCGCCACCACCTGGA
GTTCCCGAACATCGCCAAGTTGGCGCGTTGCGTGCTCTGCGTGCCAGCGA
CGTCAGTGCCGTCAGAACGGCTGTTCAGCTCTGCGGGGCTGACAGTGACG
CAACGGCGGGGCCGGCTGACTGACCATTCTGTTGAGACGCTGATTTTCTT
GAGA
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