mRNA_P-wetherbeei_contig54159.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54159.1.1
Unique NamemRNA_P-wetherbeei_contig54159.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2E7PCC7_9CHLR (Alkaline phosphatase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2E7PCC7_9CHLR)

HSP 1 Score: 104 bits (259), Expect = 4.920e-26
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAEG 225
            PAGIA MN+W+FS  T VGS+ WS  LA  GYK G +WE  RE +R  D+PIAG+I++ +GWF++HR++ IR+EG
Sbjct:  136 PAGIARMNIWRFSFYTFVGSYPWSLGLAYGGYKLGENWEDLREVMRPFDFPIAGIIIIVVGWFIYHRIKTIRSEG 210          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2E9LK63_9CHLR (Alkaline phosphatase (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E9LK63_9CHLR)

HSP 1 Score: 97.1 bits (240), Expect = 9.790e-25
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    4 AGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            AGIA MN WKFS  T VGS+ WS  LA  G+K G +WE  RE +R  DYPIAG+IL+ + WF++HR++ IRAE
Sbjct:    1 AGIARMNFWKFSFYTFVGSYPWSLGLAYGGFKLGENWEDLREVMRPFDYPIAGIILVVVFWFIYHRIKTIRAE 73          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2D9SV48_9CHLR (Alkaline phosphatase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2D9SV48_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 2.520e-23
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            PAGIA MN WKFS  T VGS+ WS  LA  G+K G +WE  R+ +R  D+PIAG+I++A+ WF++HR++ IR+E
Sbjct:  137 PAGIARMNFWKFSFYTFVGSYPWSLGLAYGGFKLGENWEDMRQVMRPFDFPIAGIIIVAVAWFIYHRIKVIRSE 210          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2E9N6Y4_9CHLR (Alkaline phosphatase n=18 Tax=root TaxID=1 RepID=A0A2E9N6Y4_9CHLR)

HSP 1 Score: 95.5 bits (236), Expect = 1.380e-22
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            PAGIA MN WKFS  T VGS+ WS  LA  G+K G +WE  R  +R  D+PIAG+I+L + WF++HR++ IR E
Sbjct:  136 PAGIARMNFWKFSFYTFVGSYPWSLGLAYGGFKLGENWEDLRRVMRPFDFPIAGIIILVVAWFIYHRIKTIRNE 209          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2N0KPL3_9CHLR (Uncharacterized protein n=1 Tax=SAR202 cluster bacterium Casp-Chloro-G2 TaxID=1926604 RepID=A0A2N0KPL3_9CHLR)

HSP 1 Score: 93.2 bits (230), Expect = 1.090e-21
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            PAGIA MN WKFS  T VGS+ WS  LA  G+K G +WE  R  +R  D+PIAG+I   + WF++HR++ IRAE
Sbjct:  136 PAGIARMNFWKFSFYTFVGSYPWSLGLAYGGFKLGENWEDMRRVMRPFDFPIAGIIAAVVIWFIYHRIKAIRAE 209          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2E6PMP8_9CHLR (Alkaline phosphatase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E6PMP8_9CHLR)

HSP 1 Score: 92.8 bits (229), Expect = 1.530e-21
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            PAGIA MN WKFS  T VGS+ WS  LA  G+  G +WE  R  +R  D+PIAG+IL+ + WF++HR++ IR E
Sbjct:  136 PAGIARMNFWKFSFYTFVGSYPWSLGLAYGGFXLGENWEDLRHVMRPFDFPIAGIILVVVAWFIYHRIKVIRRE 209          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A381RU67_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381RU67_9ZZZZ)

HSP 1 Score: 91.7 bits (226), Expect = 4.490e-21
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAEGHT 231
            PAGIA MN W+FS+ T +GS+ WS  LA  G+K G +WE  R  +R  D+PI G++L+ + WF++HR++ IR E  T
Sbjct:  136 PAGIARMNFWRFSVCTFIGSYPWSLGLAYGGFKLGENWEELRSVMRPFDFPIIGILLIVVAWFIYHRIKVIRNEDVT 212          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A1G2R4Z4_9BACT (Alkaline phosphatase n=1 Tax=Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_45_25 TaxID=1802450 RepID=A0A1G2R4Z4_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 6.310e-20
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            PAGIA MN+WKFSL T  GS LWS  LA +G K G +W+S RE     D+ IAGLI+    W+VW  ++ +R E
Sbjct:  133 PAGIARMNIWKFSLYTFAGSLLWSFALAYIGVKMGENWDSLREYFHTFDWAIAGLIIAGGVWWVWRHIKLLRGE 206          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A2E9TAB5_9CHLR (Alkaline phosphatase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E9TAB5_9CHLR)

HSP 1 Score: 87.4 bits (215), Expect = 1.430e-19
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAEGHTNT 237
            PAGIA MNVW+F+L T +G+F W+  LA  G+  G +++  R   R  D PI   +L  IGWFVWHR+REIRAE    T
Sbjct:  109 PAGIARMNVWRFALFTFIGAFPWTFGLALGGFLLGANYDDIRSVTRPFDIPIILGVLGLIGWFVWHRVREIRAESRAVT 187          
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Match: A0A800K1X6_9CHLR (DedA family protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800K1X6_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 2.150e-18
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 PAGIAEMNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLILLAIGWFVWHRLREIRAE 222
            PAGIA MNVWKF+L T VG+  W+  LA  G+  G ++E+ R   R  D PI   IL    WFVWHR+REIRAE
Sbjct:  109 PAGIARMNVWKFALFTFVGALPWTFGLALGGFLLGANYEAIRSATRPFDIPIILAILGLAVWFVWHRVREIRAE 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PCC7_9CHLR4.920e-2656.00Alkaline phosphatase n=3 Tax=Chloroflexi TaxID=200... [more]
A0A2E9LK63_9CHLR9.790e-2557.53Alkaline phosphatase (Fragment) n=1 Tax=Dehalococc... [more]
A0A2D9SV48_9CHLR2.520e-2354.05Alkaline phosphatase n=2 Tax=Chloroflexi TaxID=200... [more]
A0A2E9N6Y4_9CHLR1.380e-2254.05Alkaline phosphatase n=18 Tax=root TaxID=1 RepID=A... [more]
A0A2N0KPL3_9CHLR1.090e-2154.05Uncharacterized protein n=1 Tax=SAR202 cluster bac... [more]
A0A2E6PMP8_9CHLR1.530e-2152.70Alkaline phosphatase n=1 Tax=Chloroflexi bacterium... [more]
A0A381RU67_9ZZZZ4.490e-2148.05Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A1G2R4Z4_9BACT6.310e-2051.35Alkaline phosphatase n=1 Tax=Candidatus Wildermuth... [more]
A0A2E9TAB5_9CHLR1.430e-1950.63Alkaline phosphatase n=1 Tax=Chloroflexi bacterium... [more]
A0A800K1X6_9CHLR2.150e-1854.05DedA family protein n=1 Tax=Dehalococcoidia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54159contigP-wetherbeei_contig54159:274..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1451261.AS96_07160
PFAMsSNARE_assoc
Model size258
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.2e-11
EggNOG OGsCOG0586@1|root,COG0586@2|Bacteria,2GN43@201174|Actinobacteria,4FP4U@85023|Microbacteriaceae
DescriptionSNARE associated Golgi protein
Cds size240
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.4355376-CDS-P-wetherbeei_contig54159:273..5131683186809.4355376-CDS-P-wetherbeei_contig54159:273..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54159 274..513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.4482605-UTR-P-wetherbeei_contig54159:513..5311683186809.4482605-UTR-P-wetherbeei_contig54159:513..531Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54159 514..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54159.1.1prot_P-wetherbeei_contig54159.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54159 274..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54159.1.1

>prot_P-wetherbeei_contig54159.1.1 ID=prot_P-wetherbeei_contig54159.1.1|Name=mRNA_P-wetherbeei_contig54159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MNVWKFSLLTVVGSFLWSTPLAAVGYKWGPDWESFRERIRILDYPIAGLI
LLAIGWFVWHRLREIRAEGHTNTPTGGAS*
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mRNA from alignment at P-wetherbeei_contig54159:274..531-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54159.1.1 ID=mRNA_P-wetherbeei_contig54159.1.1|Name=mRNA_P-wetherbeei_contig54159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig54159:274..531- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGGCATCGCCGAGATGAACGTCTGGAAGTTCTCCCTGCTCACCGT CGTCGGCTCGTTCCTCTGGTCCACCCCGCTCGCCGCCGTCGGCTACAAGT GGGGGCCGGACTGGGAGAGCTTCCGCGAGCGCATCCGCATCCTCGACTAC CCCATCGCCGGGCTGATCCTGCTCGCGATCGGGTGGTTCGTATGGCACCG GCTGCGCGAGATCCGCGCGGAGGGGCACACCAATACCCCGACCGGCGGCG CTTCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54159:274..531-

>mRNA_P-wetherbeei_contig54159.1.1 ID=mRNA_P-wetherbeei_contig54159.1.1|Name=mRNA_P-wetherbeei_contig54159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig54159:274..531- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGTCTGGAAGTTCTCCCTGCTCACCGTCGTCGGCTCGTTCCTCTG
GTCCACCCCGCTCGCCGCCGTCGGCTACAAGTGGGGGCCGGACTGGGAGA
GCTTCCGCGAGCGCATCCGCATCCTCGACTACCCCATCGCCGGGCTGATC
CTGCTCGCGATCGGGTGGTTCGTATGGCACCGGCTGCGCGAGATCCGCGC
GGAGGGGCACACCAATACCCCGACCGGCGGCGCTTCGTAG
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