mRNA_P-wetherbeei_contig5414.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5414.1.1
Unique NamemRNA_P-wetherbeei_contig5414.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: A0A6H5KC06_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC06_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.350e-21
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    7 YLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSN----------------GATGPAAAYLAQHELLEQIPALRRDIL 264
            YL+KVAG RTVPVE+GGSYT +GWRQ+LMT+  FI R IE   +++      G +D  +                G  G   AYLAQH+L +QIPALRRDI+
Sbjct:   33 YLKKVAGRRTVPVELGGSYTGEGWRQELMTIGDFIGRFIESHSQEESPTDNKGCSDTGDQGEGSFPGGVAKKTSFGEKGKEKAYLAQHQLFDQIPALRRDIM 134
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: D7FKX3_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 5.230e-20
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    7 YLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEK----------------AKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDIL 264
            YL+KVAG RTVPVE+GGSYT +GWRQ+LMT+  FI R IE                  +R +G+  G    + S G  G   AYLAQH+L +QIPALRRDI+
Sbjct:  257 YLKKVAGRRTVPVELGGSYTGEGWRQELMTIGDFIGRFIESHSQEESPTDKKGCSDTGERGEGSFPGGVAKNTSCGEKGKEKAYLAQHQLFDQIPALRRDIM 358
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: A0A7S2TL84_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TL84_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 2.930e-18
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDI 261
            + Y+RK+ GHR+VPVE+G SY  D W Q+++T+++F+++++++    Q  P G+G  D   G       YLAQH L +QIP L RDI
Sbjct:   46 LSYIRKICGHRSVPVELGNSYLDDTWSQKILTVNEFVDKYLKRTPPSQ--PKGAGGEDAKGGGIDREIGYLAQHTLFDQIPGLARDI 130
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: G4YJY8_PHYSP (JmjC domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YJY8_PHYSP)

HSP 1 Score: 85.1 bits (209), Expect = 3.340e-18
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDI 261
            ++YLR+VAG RTVPVE+G SY  D W Q+LMTL++F++RHI        APS   DADG   A+     YLAQH L +QIPAL RDI
Sbjct:   43 LRYLRRVAGRRTVPVEIGSSYLGDDWGQELMTLNEFLDRHII-------APSDK-DADGKPAASRKLG-YLAQHRLFDQIPALGRDI 120
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: UPI000719CE27 (lysine-specific demethylase 8-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CE27)

HSP 1 Score: 84.3 bits (207), Expect = 4.080e-17
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    7 YLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDI 261
            YLR+VAG RTVPVE+G  YT D W Q+LMT+ +F+ RH+E A        G GD D   G       YLAQH+L +QIP LRRDI
Sbjct:  347 YLRRVAGPRTVPVEIGRRYTDDTWTQKLMTVDEFVSRHLEGA--------GGGDDDDGVG-------YLAQHQLFDQIPELRRDI 416
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: UPI0018861961 (lysine-specific demethylase 8 n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018861961)

HSP 1 Score: 82.0 bits (201), Expect = 2.150e-16
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDI 261
            ++YLR VAG RTVPVE+G  YT + W Q LMTL+KFI+R+I   KR    P         +GAT P   YLAQH+L EQIP L+ DI
Sbjct:  212 LEYLRSVAGCRTVPVEVGSRYTDEEWSQTLMTLNKFIDRYI--LKRSDICP---------DGAT-PVCGYLAQHQLFEQIPELKDDI 286
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: A8JC02_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JC02_CHLRE)

HSP 1 Score: 79.3 bits (194), Expect = 2.870e-16
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDI 261
            + YL +VAG RTVPVE+G  Y +DGW QQLMTL+ F++RH+  A     AP+ +           P   YLAQH L +QIPALR DI
Sbjct:   15 LSYLLRVAGGRTVPVEVGQHYLADGWGQQLMTLTDFLQRHVLAAAA---APAAAQQ-------PAPPLGYLAQHPLFDQIPALRADI 91
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: A0A2D4BRA3_PYTIN (JmjC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRA3_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 6.250e-16
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:    1 MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDIL 264
            + Y+R+V GHRTVP+E+G SY  D W QQLMT++ FI+R +E +        G                YLAQH L EQIPAL RDI+
Sbjct:  161 LSYIRRVCGHRTVPIEIGSSYLEDDWGQQLMTVNAFIDRFLEPSSPRSSREIG----------------YLAQHHLFEQIPALARDIM 232
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BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: UPI000A2A5C0B (lysine-specific demethylase 8 isoform X1 n=4 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5C0B)

HSP 1 Score: 80.1 bits (196), Expect = 1.120e-15
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDIL 264
            MQYL+ +AG R VPVE+G  YT D W Q+LMT+S FI+ +IE ++++                     AYLAQH+L EQIP LR+DI+
Sbjct:  218 MQYLKDIAGGRXVPVELGLRYTDDSWTQKLMTISDFIDNYIEPSEQENDIE----------------VAYLAQHQLFEQIPELRKDII 289
[Close]
BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Match: A0A3M6VC41_9STRA (JmjC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VC41_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.190e-15
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    7 YLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGAPSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDIL 264
            YLR+VAG RTVPVE+G SY  D W Q+LMTL++F+ RHI        + +   D   S+ +      YLAQH L +QIPALRRDI+
Sbjct:  203 YLRRVAGLRTVPVEVGSSYMGDDWGQELMTLNEFLNRHIIPLLAKNKSVTSIDDTR-SHPSLSKKVGYLAQHRLFDQIPALRRDII 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5414.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC06_9PHAE5.350e-2148.04JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FKX3_ECTSI5.230e-2050.00JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2TL84_9EUKA2.930e-1842.53Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
G4YJY8_PHYSP3.340e-1855.17JmjC domain-containing protein n=1 Tax=Phytophthor... [more]
UPI000719CE274.080e-1752.94lysine-specific demethylase 8-like n=1 Tax=Priapul... [more]
UPI00188619612.150e-1652.87lysine-specific demethylase 8 n=1 Tax=Syngnathus a... [more]
A8JC02_CHLRE2.870e-1649.43Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A2D4BRA3_PYTIN6.250e-1645.45JmjC domain-containing protein n=1 Tax=Pythium ins... [more]
UPI000A2A5C0B1.120e-1545.45lysine-specific demethylase 8 isoform X1 n=4 Tax=E... [more]
A0A3M6VC41_9STRA1.190e-1550.00JmjC domain-containing protein n=2 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5414contigP-wetherbeei_contig5414:3..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKX3
PFAMsCupin_8
Model size264
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K01001,ko:K10277,ko:K17970
KEGG ReactionR05969
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0003674,GO:0003682,GO:0003700,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006482,GO:0006807,GO:0006996,GO:0007049,GO:0007623,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008214,GO:0008276,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016278,GO:0016279,GO:0016491,GO:0016569,GO:0016570,GO:0016571,GO:0016577,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032451,GO:0032452,GO:0034968,GO:0036211,GO:0042054,GO:0042752,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0045893,GO:0045935,GO:0046975,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051213,GO:0051252,GO:0051254,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons2
Evalue8.57e-21
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota
EC1.14.11.27,2.7.8.15
DescriptiontRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
Cds size264
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.042516-CDS-P-wetherbeei_contig5414:2..1221683186809.042516-CDS-P-wetherbeei_contig5414:2..122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5414 3..122 -
1683186809.0635328-CDS-P-wetherbeei_contig5414:469..6131683186809.0635328-CDS-P-wetherbeei_contig5414:469..613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5414 470..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5414.1.1prot_P-wetherbeei_contig5414.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5414 3..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5414.1.1

>prot_P-wetherbeei_contig5414.1.1 ID=prot_P-wetherbeei_contig5414.1.1|Name=mRNA_P-wetherbeei_contig5414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MQYLRKVAGHRTVPVEMGGSYTSDGWRQQLMTLSKFIERHIEKAKRDQGA
PSGSGDADGSNGATGPAAAYLAQHELLEQIPALRRDIL
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mRNA from alignment at P-wetherbeei_contig5414:3..613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5414.1.1 ID=mRNA_P-wetherbeei_contig5414.1.1|Name=mRNA_P-wetherbeei_contig5414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=611bp|location=Sequence derived from alignment at P-wetherbeei_contig5414:3..613- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTACTTGCGAAAGGTGGCGGGTCACCGCACCGTGCCGGTGGAGAT
GGGGGGCAGCTACACGAGTGACGGGTGGCGCCAGCAGCTCATGACACTCT
CCAAATTCATCGAGCGGCACATCGAGAAGGCAAAAAGGGACCAGGTGAGT
CGGCGGCGGCGGATTCCGGCAAAGCTAGCTTCCTTTTCTGGCCATTTATA
GGGCTAGCGTGCTCTTTTCTTCTCAAGTTGTTGATCTACGTGTGCGGCGG
CGTTGGTTCGCGAATTTTATCTCGGAGCAGTTGCTGCGTCGGCGTCTGCC
TTGCTTACACAATGTTTAGAACCGATACGTTGTGCTCTTCGACGTTCTTT
GACTGACAGAACTCATGCAAGCCAAGCAGATCACTTTGAGATATCTTGTT
GCGCGTTAGAGCTCCTCGCGCTTCGAGTTTGCCATTCCAAGTCGATCCCG
AAACTCACATACATCAACACTATTATTTCCCTTTTTCGTAGGGAGCGCCG
TCGGGAAGCGGCGATGCCGACGGCAGCAATGGCGCCACGGGGCCGGCTGC
GGCGTACCTGGCCCAGCACGAGCTGCTTGAGCAGATCCCGGCGCTTCGAC
GGGACATCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5414:3..613-

>mRNA_P-wetherbeei_contig5414.1.1 ID=mRNA_P-wetherbeei_contig5414.1.1|Name=mRNA_P-wetherbeei_contig5414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig5414:3..613- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTACTTGCGAAAGGTGGCGGGTCACCGCACCGTGCCGGTGGAGAT
GGGGGGCAGCTACACGAGTGACGGGTGGCGCCAGCAGCTCATGACACTCT
CCAAATTCATCGAGCGGCACATCGAGAAGGCAAAAAGGGACCAGGGAGCG
CCGTCGGGAAGCGGCGATGCCGACGGCAGCAATGGCGCCACGGGGCCGGC
TGCGGCGTACCTGGCCCAGCACGAGCTGCTTGAGCAGATCCCGGCGCTTC
GACGGGACATCCTG
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