mRNA_P-wetherbeei_contig54129.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54129.1.1
Unique NamemRNA_P-wetherbeei_contig54129.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A1G8NN92_9RHOO (50S ribosomal protein L7/L12 n=2 Tax=Propionivibrio TaxID=83766 RepID=A0A1G8NN92_9RHOO)

HSP 1 Score: 127 bits (319), Expect = 6.420e-36
Identity = 77/99 (77.78%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAA                 AEEQTEFTV LL AGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGI K DA ALKKQLEDAGAKVEVK
Sbjct:   28 EEKFGVSAAAMAVAAPGAGGAAAP--AEEQTEFTVMLLGAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIAKADAEALKKQLEDAGAKVEVK 124
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A7Y8JH49_9RHOO (50S ribosomal protein L7/L12 n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8JH49_9RHOO)

HSP 1 Score: 126 bits (317), Expect = 1.370e-35
Identity = 87/99 (87.88%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAA    XXXXXXXXXXXXXAEE+TEFTV L AAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPK VKEGI K DA ALKKQLEDAGAKVE+K
Sbjct:   28 EEKFGVSAAATAVXXXXXXXXXXXXXAEEKTEFTVVLQAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKPVKEGIPKADAEALKKQLEDAGAKVEIK 126
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A7W8HKT7_9BURK (50S ribosomal protein L7/L12 n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A7W8HKT7_9BURK)

HSP 1 Score: 125 bits (315), Expect = 3.210e-35
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            E+KFGVSAAXXXXXXXXXXXXXXXXX EEQTEF+V LLAAGEKKVEVIKVVRAATGLGLKEAKD+VDGAPKAVKEGI K DA ALKKQLEDAGAKVE+K
Sbjct:   33 EDKFGVSAAXXXXXXXXXXXXXXXXXXEEQTEFSVVLLAAGEKKVEVIKVVRAATGLGLKEAKDVVDGAPKAVKEGIAKADAEALKKQLEDAGAKVELK 131
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A7Z7HQN6_9PROT (50S ribosomal protein L7/L12 n=1 Tax=Sterolibacterium denitrificans TaxID=157592 RepID=A0A7Z7HQN6_9PROT)

HSP 1 Score: 125 bits (313), Expect = 5.740e-35
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXA-EEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAAXXXXXXXXXXXXXXXXX  EEQTEFTV LLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEG+ K DA ALKKQLE+AGAKVE+K
Sbjct:   28 EEKFGVSAAXXXXXXXXXXXXXXXXXXXEEQTEFTVQLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGVSKADADALKKQLEEAGAKVEIK 127
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: F5RD90_METUF (50S ribosomal protein L7/L12 n=5 Tax=Betaproteobacteria TaxID=28216 RepID=F5RD90_METUF)

HSP 1 Score: 124 bits (312), Expect = 7.910e-35
Identity = 87/99 (87.88%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAA   XXXXXXXXXXXXXXAEE+TEFTV L AAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPK VKEGI K DA ALKKQLE+AGAKVE+K
Sbjct:   28 EEKFGVSAAAAVXXXXXXXXXXXXXXAEEKTEFTVVLAAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKPVKEGIAKADAEALKKQLEEAGAKVELK 126
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A2N2USR9_9PROT (50S ribosomal protein L7/L12 n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2N2USR9_9PROT)

HSP 1 Score: 124 bits (311), Expect = 1.090e-34
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAAXXXXXXXXXXXXXXXXX EEQTEFTV LLAAGEKKVEVIKVVRAATGLGLKEAKD+VDGAPKAVKEG+ K DA ALKKQLE+AGAKVEVK
Sbjct:   28 EEKFGVSAAXXXXXXXXXXXXXXXXX-EEQTEFTVMLLAAGEKKVEVIKVVRAATGLGLKEAKDVVDGAPKAVKEGVSKADAEALKKQLEEAGAKVEVK 125
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BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A7X7LW07_9RHOO (50S ribosomal protein L7/L12 n=1 Tax=Thauera phenolivorans TaxID=1792543 RepID=A0A7X7LW07_9RHOO)

HSP 1 Score: 123 bits (309), Expect = 2.260e-34
Identity = 88/99 (88.89%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAA XXXXXXXXXXXXXXXX EE+TEF V LLAAGEKKVEVIKVVRA TGLGLKEAKDLVDGAPKAVKEG  K DA ALKKQLEDAGAKVE+K
Sbjct:   28 EEKFGVSAAAXXXXXXXXXXXXXXXXXEEKTEFDVVLLAAGEKKVEVIKVVRAVTGLGLKEAKDLVDGAPKAVKEGANKADAEALKKQLEDAGAKVEIK 126
[Close]
BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A838LQP8_9RHOO (50S ribosomal protein L7/L12 n=4 Tax=Rhodocyclales TaxID=206389 RepID=A0A838LQP8_9RHOO)

HSP 1 Score: 122 bits (307), Expect = 4.300e-34
Identity = 91/99 (91.92%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAAXXXXXXXXXXXXXXXX  EEQTEFTV LLAAGEKKVEVIKVVRAAT LGLKEAKDLVDGAPKAVKE I K DA ALKKQLEDAGAKVEVK
Sbjct:   28 EEKFGVSAAXXXXXXXXXXXXXXXX--EEQTEFTVMLLAAGEKKVEVIKVVRAATALGLKEAKDLVDGAPKAVKEAISKADAEALKKQLEDAGAKVEVK 124
[Close]
BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A1J5QHY2_9ZZZZ (50S ribosomal protein L7/L12 n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5QHY2_9ZZZZ)

HSP 1 Score: 122 bits (306), Expect = 5.920e-34
Identity = 87/99 (87.88%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAAXXXXXXXXXXXXXX    EE+TEFTV LLAAGEKKVE IKVVRAATGLGLKEAKDLVDGAPKAVKEGI K DA ALKKQLED GAKVE+K
Sbjct:   28 EEKFGVSAAXXXXXXXXXXXXXX---VEEKTEFTVMLLAAGEKKVEAIKVVRAATGLGLKEAKDLVDGAPKAVKEGIPKADAEALKKQLEDVGAKVEIK 123
[Close]
BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Match: A0A6S6XWB7_9PROT (50S ribosomal protein L7/L12 n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A6S6XWB7_9PROT)

HSP 1 Score: 122 bits (305), Expect = 8.160e-34
Identity = 73/99 (73.74%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 EEKFGVSAAXXXXXXXXXXXXXXXXXAEEQTEFTVNLLAAGEKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK 297
            EEKFGVSAA                  EEQTEFTV LL AGEKKVEVIKVVRA TGLGLKEAKDLVDGAPK VKEG+ K DA ALKKQLEDAGAKVEVK
Sbjct:   28 EEKFGVSAASMAVAAPGAVAAA----VEEQTEFTVMLLGAGEKKVEVIKVVRAVTGLGLKEAKDLVDGAPKPVKEGVSKADADALKKQLEDAGAKVEVK 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G8NN92_9RHOO6.420e-3677.7850S ribosomal protein L7/L12 n=2 Tax=Propionivibri... [more]
A0A7Y8JH49_9RHOO1.370e-3587.8850S ribosomal protein L7/L12 n=1 Tax=Rhodocyclacea... [more]
A0A7W8HKT7_9BURK3.210e-3590.9150S ribosomal protein L7/L12 n=3 Tax=Proteobacteri... [more]
A0A7Z7HQN6_9PROT5.740e-3591.0050S ribosomal protein L7/L12 n=1 Tax=Sterolibacter... [more]
F5RD90_METUF7.910e-3587.8850S ribosomal protein L7/L12 n=5 Tax=Betaproteobac... [more]
A0A2N2USR9_9PROT1.090e-3491.9250S ribosomal protein L7/L12 n=4 Tax=Betaproteobac... [more]
A0A7X7LW07_9RHOO2.260e-3488.8950S ribosomal protein L7/L12 n=1 Tax=Thauera pheno... [more]
A0A838LQP8_9RHOO4.300e-3491.9250S ribosomal protein L7/L12 n=4 Tax=Rhodocyclales... [more]
A0A1J5QHY2_9ZZZZ5.920e-3487.8850S ribosomal protein L7/L12 n=1 Tax=mine drainage... [more]
A0A6S6XWB7_9PROT8.160e-3473.7450S ribosomal protein L7/L12 n=5 Tax=Proteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54129contigP-wetherbeei_contig54129:2..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1000565.METUNv1_02255
Preferred namerplL
PFAMsRibosomal_L12,Ribosomal_L12_N
Model size300
Max annot lvl206389|Rhodocyclales
KEGG koko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-35
EggNOG OGsCOG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,2VSG7@28216|Betaproteobacteria,2KWTF@206389|Rhodocyclales
DescriptionForms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
Cds size300
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.9506068-CDS-P-wetherbeei_contig54129:1..3011683186808.9506068-CDS-P-wetherbeei_contig54129:1..301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54129 2..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54129.1.1prot_P-wetherbeei_contig54129.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54129 2..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54129.1.1

>prot_P-wetherbeei_contig54129.1.1 ID=prot_P-wetherbeei_contig54129.1.1|Name=mRNA_P-wetherbeei_contig54129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
EEKFGVSAAAAAVAVAAPAGGAAAPAAEEQTEFTVNLLAAGEKKVEVIKV
VRAATGLGLKEAKDLVDGAPKAVKEGIKKEDAAALKKQLEDAGAKVEVK*
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mRNA from alignment at P-wetherbeei_contig54129:2..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54129.1.1 ID=mRNA_P-wetherbeei_contig54129.1.1|Name=mRNA_P-wetherbeei_contig54129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig54129:2..301+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGAGAAGTTCGGCGTATCCGCAGCAGCGGCGGCCGTGGCAGTGGCCGC
GCCGGCCGGCGGCGCAGCAGCCCCGGCGGCCGAAGAGCAGACCGAATTCA
CCGTCAACCTGCTCGCCGCTGGCGAGAAGAAAGTTGAAGTGATCAAGGTC
GTGCGTGCAGCCACTGGCCTGGGCCTGAAGGAAGCCAAGGACTTGGTCGA
CGGCGCACCGAAGGCCGTCAAGGAAGGCATCAAGAAGGAAGACGCTGCCG
CGCTCAAGAAGCAGCTCGAAGACGCGGGCGCGAAAGTCGAAGTCAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54129:2..301+

>mRNA_P-wetherbeei_contig54129.1.1 ID=mRNA_P-wetherbeei_contig54129.1.1|Name=mRNA_P-wetherbeei_contig54129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig54129:2..301+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGAGAAGTTCGGCGTATCCGCAGCAGCGGCGGCCGTGGCAGTGGCCGC
GCCGGCCGGCGGCGCAGCAGCCCCGGCGGCCGAAGAGCAGACCGAATTCA
CCGTCAACCTGCTCGCCGCTGGCGAGAAGAAAGTTGAAGTGATCAAGGTC
GTGCGTGCAGCCACTGGCCTGGGCCTGAAGGAAGCCAAGGACTTGGTCGA
CGGCGCACCGAAGGCCGTCAAGGAAGGCATCAAGAAGGAAGACGCTGCCG
CGCTCAAGAAGCAGCTCGAAGACGCGGGCGCGAAAGTCGAAGTCAAGTAA
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